Gvermi863.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi863.t1
Unique Name	Gvermi863.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	585

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2952	contig	ScGOVlb_2952:691015..692769 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	529818.AMSG_05362T0
PFAMs	DNA_mis_repair,HATPase_c,HATPase_c_3
Max annot lvl	2759\|Eukaryota
GOs	GO:0000003,GO:0000280,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140013,GO:1901360,GO:1901363,GO:1903046
Evalue	7.54e-08
EggNOG OGs	COG0323@1\|root,KOG1978@2759\|Eukaryota
Description	mismatched DNA binding
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi863	Gvermi863	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2952 691015..692769 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi863.t1.start1	Gvermi863.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2952 691015..691017 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi863.t1.CDS1	Gvermi863.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2952 691015..692769 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi863.t1.exon1	Gvermi863.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2952 691015..692769 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi863.t1.stop1	Gvermi863.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2952 692767..692769 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi863.t1	Gvermi863.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2952 691015..692769 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2952:691015..692769+
coding sequence from alignment at ScGOVlb_2952:691015..692769+

mRNA sequence

>Gvermi863.t1 ID=Gvermi863.t1|Name=Gvermi863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=585bp
MWYIQDESRKEGPKYWLGGTQTDGRTIGRKMVDIRLKASSVSRVHAKISV
HKASFYAPPGSHEQTTAVSVVDFSAYGTFLKYPPNHIASRQEPAGHHRRL
NKDDPTEVYEGALLAFGAPSAWWQVCWQHLRVFPSRLTPAARARSEEIGA
LTSLEVADQMSAKVTHLLTSSCVSTSQNFLLMLARNGHVVEPAWLEALLM
IVQNACTAISVAESQGIAYTATCLPPEDNYLPPFSDEDVADYAPDVLRNV
MKRTQKDKRKNMFKGIVFAFEGQDRSTWWAQIVESLGGDTVLTSVLSERP
ELKGRRILFVANNEVETIDGAQNISVPFTMEKGIIESILRADLTPIESAL
DIVRDEIFREKHKRVLNRNNPQKPIASLGGAYVADVATPGPLDAESDVES
DASGPTEAFRASSHTNCNKFPKTVGTEQMTDGSTKPASEKVSKREDVKKK
VQPFNVDVESQQKRIRSIRQRKESGDTNNEHNEAKAPQTENDITMEDGID
FDAEKDNDREFFPVPSAPPGPTLSEAPSRKGDVRPFRRRKLPSGTVVPLK
RVKVLDETNIYNTGGRRLLISREDDDNAHSEANE*

spliced messenger RNA

>Gvermi863.t1 ID=Gvermi863.t1|Name=Gvermi863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at ScGOVlb_2952:691015..692769+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTACATTCAAGACGAATCCCGGAAGGAAGGACCGAAGTACTGGCT
TGGAGGCACGCAAACCGACGGACGCACAATTGGTCGGAAAATGGTTGACA
TCCGCTTGAAGGCTTCATCGGTATCTCGTGTTCACGCCAAGATAAGCGTA
CACAAAGCCTCATTCTATGCCCCACCAGGCTCGCACGAACAAACTACTGC
GGTATCCGTCGTCGATTTCTCTGCCTACGGCACGTTCCTGAAATATCCCC
CTAATCACATTGCTAGCAGGCAAGAGCCTGCTGGTCATCACCGTCGCCTC
AACAAGGATGATCCAACGGAAGTCTATGAAGGCGCATTATTGGCGTTCGG
CGCGCCGAGCGCATGGTGGCAAGTATGCTGGCAACACCTACGTGTGTTTC
CCTCACGGCTCACCCCTGCTGCACGCGCTCGTTCGGAGGAGATAGGCGCT
TTGACATCACTAGAAGTAGCAGACCAGATGTCGGCGAAAGTCACTCATCT
CCTCACAAGTTCCTGTGTGTCAACGAGTCAAAATTTCCTTCTTATGCTTG
CGAGAAATGGGCATGTGGTTGAACCTGCTTGGTTAGAAGCGCTTCTCATG
ATAGTACAAAATGCGTGCACCGCCATATCTGTTGCTGAATCACAAGGTAT
CGCATATACGGCAACCTGCCTACCCCCTGAAGACAACTACCTTCCGCCGT
TCTCTGATGAGGATGTAGCTGATTATGCTCCTGATGTGCTTCGAAATGTA
ATGAAGCGTACACAAAAGGATAAACGTAAGAACATGTTTAAGGGTATAGT
TTTTGCATTTGAAGGACAAGATCGAAGCACTTGGTGGGCACAAATCGTTG
AATCATTGGGCGGGGATACCGTGTTGACAAGCGTTTTGAGTGAAAGACCA
GAACTGAAGGGAAGGCGCATTCTCTTTGTTGCTAACAATGAGGTCGAAAC
AATCGATGGCGCGCAGAACATAAGCGTTCCATTCACGATGGAAAAGGGCA
TTATAGAGTCTATTCTTCGAGCCGATTTGACGCCCATCGAGTCTGCTCTT
GATATTGTGCGTGATGAAATATTTCGAGAGAAGCATAAACGAGTACTCAA
CCGAAATAATCCACAGAAACCGATCGCTTCACTTGGTGGGGCTTACGTTG
CAGATGTCGCTACTCCAGGGCCTCTTGATGCGGAAAGCGATGTAGAAAGC
GATGCGAGTGGTCCTACAGAAGCTTTTCGGGCGTCTTCTCACACCAATTG
CAACAAATTCCCGAAAACAGTAGGTACGGAGCAAATGACAGATGGAAGCA
CGAAACCCGCGTCGGAAAAGGTTTCGAAGCGCGAAGATGTTAAGAAGAAA
GTGCAACCTTTTAATGTGGATGTGGAATCGCAACAGAAGAGAATTCGTTC
AATTCGTCAGCGAAAGGAATCCGGTGACACTAACAATGAGCATAATGAGG
CAAAAGCCCCTCAAACTGAGAACGATATAACTATGGAAGACGGTATTGAC
TTTGACGCTGAAAAAGATAACGACAGGGAATTTTTTCCAGTCCCTTCAGC
GCCACCAGGGCCGACATTAAGTGAAGCTCCATCTCGTAAGGGTGATGTGC
GTCCATTTCGTAGGCGAAAGTTGCCGTCTGGAACTGTTGTTCCGCTCAAG
AGAGTCAAAGTTTTAGATGAGACGAATATATACAATACCGGGGGAAGGCG
ACTATTGATCTCCCGGGAAGACGATGATAACGCTCATTCTGAAGCTAATG
AATAG

protein sequence of Gvermi863.t1

>Gvermi863.t1 ID=Gvermi863.t1|Name=Gvermi863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=585bp
MWYIQDESRKEGPKYWLGGTQTDGRTIGRKMVDIRLKASSVSRVHAKISV
HKASFYAPPGSHEQTTAVSVVDFSAYGTFLKYPPNHIASRQEPAGHHRRL
NKDDPTEVYEGALLAFGAPSAWWQVCWQHLRVFPSRLTPAARARSEEIGA
LTSLEVADQMSAKVTHLLTSSCVSTSQNFLLMLARNGHVVEPAWLEALLM
IVQNACTAISVAESQGIAYTATCLPPEDNYLPPFSDEDVADYAPDVLRNV
MKRTQKDKRKNMFKGIVFAFEGQDRSTWWAQIVESLGGDTVLTSVLSERP
ELKGRRILFVANNEVETIDGAQNISVPFTMEKGIIESILRADLTPIESAL
DIVRDEIFREKHKRVLNRNNPQKPIASLGGAYVADVATPGPLDAESDVES
DASGPTEAFRASSHTNCNKFPKTVGTEQMTDGSTKPASEKVSKREDVKKK
VQPFNVDVESQQKRIRSIRQRKESGDTNNEHNEAKAPQTENDITMEDGID
FDAEKDNDREFFPVPSAPPGPTLSEAPSRKGDVRPFRRRKLPSGTVVPLK
RVKVLDETNIYNTGGRRLLISREDDDNAHSEANE*

mRNA from alignment at ScGOVlb_2952:691015..692769+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi863.t1 ID=Gvermi863.t1|Name=Gvermi863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at ScGOVlb_2952:691015..692769+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGTACATTCAAGACGAATCCCGGAAGGAAGGACCGAAGTACTGGCT
TGGAGGCACGCAAACCGACGGACGCACAATTGGTCGGAAAATGGTTGACA
TCCGCTTGAAGGCTTCATCGGTATCTCGTGTTCACGCCAAGATAAGCGTA
CACAAAGCCTCATTCTATGCCCCACCAGGCTCGCACGAACAAACTACTGC
GGTATCCGTCGTCGATTTCTCTGCCTACGGCACGTTCCTGAAATATCCCC
CTAATCACATTGCTAGCAGGCAAGAGCCTGCTGGTCATCACCGTCGCCTC
AACAAGGATGATCCAACGGAAGTCTATGAAGGCGCATTATTGGCGTTCGG
CGCGCCGAGCGCATGGTGGCAAGTATGCTGGCAACACCTACGTGTGTTTC
CCTCACGGCTCACCCCTGCTGCACGCGCTCGTTCGGAGGAGATAGGCGCT
TTGACATCACTAGAAGTAGCAGACCAGATGTCGGCGAAAGTCACTCATCT
CCTCACAAGTTCCTGTGTGTCAACGAGTCAAAATTTCCTTCTTATGCTTG
CGAGAAATGGGCATGTGGTTGAACCTGCTTGGTTAGAAGCGCTTCTCATG
ATAGTACAAAATGCGTGCACCGCCATATCTGTTGCTGAATCACAAGGTAT
CGCATATACGGCAACCTGCCTACCCCCTGAAGACAACTACCTTCCGCCGT
TCTCTGATGAGGATGTAGCTGATTATGCTCCTGATGTGCTTCGAAATGTA
ATGAAGCGTACACAAAAGGATAAACGTAAGAACATGTTTAAGGGTATAGT
TTTTGCATTTGAAGGACAAGATCGAAGCACTTGGTGGGCACAAATCGTTG
AATCATTGGGCGGGGATACCGTGTTGACAAGCGTTTTGAGTGAAAGACCA
GAACTGAAGGGAAGGCGCATTCTCTTTGTTGCTAACAATGAGGTCGAAAC
AATCGATGGCGCGCAGAACATAAGCGTTCCATTCACGATGGAAAAGGGCA
TTATAGAGTCTATTCTTCGAGCCGATTTGACGCCCATCGAGTCTGCTCTT
GATATTGTGCGTGATGAAATATTTCGAGAGAAGCATAAACGAGTACTCAA
CCGAAATAATCCACAGAAACCGATCGCTTCACTTGGTGGGGCTTACGTTG
CAGATGTCGCTACTCCAGGGCCTCTTGATGCGGAAAGCGATGTAGAAAGC
GATGCGAGTGGTCCTACAGAAGCTTTTCGGGCGTCTTCTCACACCAATTG
CAACAAATTCCCGAAAACAGTAGGTACGGAGCAAATGACAGATGGAAGCA
CGAAACCCGCGTCGGAAAAGGTTTCGAAGCGCGAAGATGTTAAGAAGAAA
GTGCAACCTTTTAATGTGGATGTGGAATCGCAACAGAAGAGAATTCGTTC
AATTCGTCAGCGAAAGGAATCCGGTGACACTAACAATGAGCATAATGAGG
CAAAAGCCCCTCAAACTGAGAACGATATAACTATGGAAGACGGTATTGAC
TTTGACGCTGAAAAAGATAACGACAGGGAATTTTTTCCAGTCCCTTCAGC
GCCACCAGGGCCGACATTAAGTGAAGCTCCATCTCGTAAGGGTGATGTGC
GTCCATTTCGTAGGCGAAAGTTGCCGTCTGGAACTGTTGTTCCGCTCAAG
AGAGTCAAAGTTTTAGATGAGACGAATATATACAATACCGGGGGAAGGCG
ACTATTGATCTCCCGGGAAGACGATGATAACGCTCATTCTGAAGCTAATG
AATAG

Coding sequence (CDS) from alignment at ScGOVlb_2952:691015..692769+

>Gvermi863.t1 ID=Gvermi863.t1|Name=Gvermi863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1755bp|location=Sequence derived from alignment at ScGOVlb_2952:691015..692769+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGTACATTCAAGACGAATCCCGGAAGGAAGGACCGAAGTACTGGCT
TGGAGGCACGCAAACCGACGGACGCACAATTGGTCGGAAAATGGTTGACA
TCCGCTTGAAGGCTTCATCGGTATCTCGTGTTCACGCCAAGATAAGCGTA
CACAAAGCCTCATTCTATGCCCCACCAGGCTCGCACGAACAAACTACTGC
GGTATCCGTCGTCGATTTCTCTGCCTACGGCACGTTCCTGAAATATCCCC
CTAATCACATTGCTAGCAGGCAAGAGCCTGCTGGTCATCACCGTCGCCTC
AACAAGGATGATCCAACGGAAGTCTATGAAGGCGCATTATTGGCGTTCGG
CGCGCCGAGCGCATGGTGGCAAGTATGCTGGCAACACCTACGTGTGTTTC
CCTCACGGCTCACCCCTGCTGCACGCGCTCGTTCGGAGGAGATAGGCGCT
TTGACATCACTAGAAGTAGCAGACCAGATGTCGGCGAAAGTCACTCATCT
CCTCACAAGTTCCTGTGTGTCAACGAGTCAAAATTTCCTTCTTATGCTTG
CGAGAAATGGGCATGTGGTTGAACCTGCTTGGTTAGAAGCGCTTCTCATG
ATAGTACAAAATGCGTGCACCGCCATATCTGTTGCTGAATCACAAGGTAT
CGCATATACGGCAACCTGCCTACCCCCTGAAGACAACTACCTTCCGCCGT
TCTCTGATGAGGATGTAGCTGATTATGCTCCTGATGTGCTTCGAAATGTA
ATGAAGCGTACACAAAAGGATAAACGTAAGAACATGTTTAAGGGTATAGT
TTTTGCATTTGAAGGACAAGATCGAAGCACTTGGTGGGCACAAATCGTTG
AATCATTGGGCGGGGATACCGTGTTGACAAGCGTTTTGAGTGAAAGACCA
GAACTGAAGGGAAGGCGCATTCTCTTTGTTGCTAACAATGAGGTCGAAAC
AATCGATGGCGCGCAGAACATAAGCGTTCCATTCACGATGGAAAAGGGCA
TTATAGAGTCTATTCTTCGAGCCGATTTGACGCCCATCGAGTCTGCTCTT
GATATTGTGCGTGATGAAATATTTCGAGAGAAGCATAAACGAGTACTCAA
CCGAAATAATCCACAGAAACCGATCGCTTCACTTGGTGGGGCTTACGTTG
CAGATGTCGCTACTCCAGGGCCTCTTGATGCGGAAAGCGATGTAGAAAGC
GATGCGAGTGGTCCTACAGAAGCTTTTCGGGCGTCTTCTCACACCAATTG
CAACAAATTCCCGAAAACAGTAGGTACGGAGCAAATGACAGATGGAAGCA
CGAAACCCGCGTCGGAAAAGGTTTCGAAGCGCGAAGATGTTAAGAAGAAA
GTGCAACCTTTTAATGTGGATGTGGAATCGCAACAGAAGAGAATTCGTTC
AATTCGTCAGCGAAAGGAATCCGGTGACACTAACAATGAGCATAATGAGG
CAAAAGCCCCTCAAACTGAGAACGATATAACTATGGAAGACGGTATTGAC
TTTGACGCTGAAAAAGATAACGACAGGGAATTTTTTCCAGTCCCTTCAGC
GCCACCAGGGCCGACATTAAGTGAAGCTCCATCTCGTAAGGGTGATGTGC
GTCCATTTCGTAGGCGAAAGTTGCCGTCTGGAACTGTTGTTCCGCTCAAG
AGAGTCAAAGTTTTAGATGAGACGAATATATACAATACCGGGGGAAGGCG
ACTATTGATCTCCCGGGAAGACGATGATAACGCTCATTCTGAAGCTAATG
AATAG