Gvermi777.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi777.t1
Unique NameGvermi777.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length317
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:183943..184893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi777Gvermi777Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 183943..184893 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi777.t1.stop1Gvermi777.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 183943..183945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi777.t1.CDS1Gvermi777.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 183943..184893 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi777.t1.exon1Gvermi777.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 183943..184893 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi777.t1.start1Gvermi777.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 184891..184893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi777.t1Gvermi777.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 183943..184893 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi777.t1 ID=Gvermi777.t1|Name=Gvermi777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=317bp
MARRRARRASSAGFASSLGCLRALGIALLLVALPVSLRARQPLFTAPRPE
ANSAASSAADTAATQRRAQPANVSSLAALPAAPVSTLSPVADWTPMRLPR
HQQLLTSVLRCNCTRVAEALYKIVKLFGVRTLCDVPAASHASWMLPVVNR
LTFETPSFRYIAIDDDHALLRNVARRYQHVVDAEFVPGLQPRSLQACELL
FYWPACGAAWHAAQTQSTLRVLQHAPAVLRMAKDARCALMLFPQTPDAPR
NRTLAFRAGRWTVMEKARSPAARPPFMLNDFVKGAIPIGNLTHRDALYMT
LYSLSAIPRAALSMRP*
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spliced messenger RNA

>Gvermi777.t1 ID=Gvermi777.t1|Name=Gvermi777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=951bp|location=Sequence derived from alignment at ScGOVlb_2952:183943..184893- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGCCGTCGTGCGCGCCGCGCGTCTTCCGCGGGATTTGCGTCGTC
GCTGGGGTGCCTGCGCGCGCTAGGCATCGCCCTACTGCTGGTTGCTCTGC
CCGTGTCGCTGCGAGCACGCCAGCCGCTGTTCACCGCACCCAGGCCAGAG
GCCAATTCAGCCGCCAGTTCAGCCGCCGATACGGCCGCCACACAGCGCCG
CGCTCAACCCGCCAACGTCTCGTCGCTGGCGGCGTTGCCAGCGGCGCCTG
TCTCCACGCTGTCGCCCGTGGCCGACTGGACGCCCATGCGATTGCCCCGC
CACCAGCAACTGCTGACCAGCGTGTTGCGCTGCAACTGCACACGCGTAGC
AGAGGCGCTCTACAAGATTGTCAAGCTGTTCGGCGTGCGCACGCTGTGCG
ATGTGCCCGCCGCATCGCACGCCTCGTGGATGCTGCCGGTGGTCAATCGC
CTCACGTTCGAGACGCCGTCGTTTCGGTACATCGCCATCGACGACGACCA
CGCGCTGCTCCGCAATGTGGCGCGACGCTACCAGCACGTGGTGGACGCCG
AGTTCGTGCCCGGGCTGCAACCGCGCTCGCTGCAGGCGTGCGAACTGCTC
TTCTACTGGCCGGCGTGCGGCGCCGCCTGGCACGCGGCGCAGACGCAGTC
CACGCTGCGCGTATTGCAGCACGCGCCGGCGGTGCTGCGCATGGCCAAGG
ACGCGCGCTGCGCGCTGATGCTGTTCCCGCAAACGCCCGATGCTCCGCGC
AACCGCACGCTGGCCTTCCGCGCGGGGCGCTGGACCGTCATGGAGAAGGC
GCGCTCGCCGGCGGCACGCCCGCCTTTCATGCTCAACGACTTTGTCAAGG
GCGCCATCCCCATCGGCAACCTCACGCATCGCGACGCTCTGTACATGACT
CTCTACTCGCTCTCCGCCATCCCGCGCGCCGCGCTCTCCATGCGCCCGTG
A
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protein sequence of Gvermi777.t1

>Gvermi777.t1 ID=Gvermi777.t1|Name=Gvermi777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=317bp
MARRRARRASSAGFASSLGCLRALGIALLLVALPVSLRARQPLFTAPRPE
ANSAASSAADTAATQRRAQPANVSSLAALPAAPVSTLSPVADWTPMRLPR
HQQLLTSVLRCNCTRVAEALYKIVKLFGVRTLCDVPAASHASWMLPVVNR
LTFETPSFRYIAIDDDHALLRNVARRYQHVVDAEFVPGLQPRSLQACELL
FYWPACGAAWHAAQTQSTLRVLQHAPAVLRMAKDARCALMLFPQTPDAPR
NRTLAFRAGRWTVMEKARSPAARPPFMLNDFVKGAIPIGNLTHRDALYMT
LYSLSAIPRAALSMRP*
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mRNA from alignment at ScGOVlb_2952:183943..184893-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi777.t1 ID=Gvermi777.t1|Name=Gvermi777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=951bp|location=Sequence derived from alignment at ScGOVlb_2952:183943..184893- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCGCCGTCGTGCGCGCCGCGCGTCTTCCGCGGGATTTGCGTCGTC
GCTGGGGTGCCTGCGCGCGCTAGGCATCGCCCTACTGCTGGTTGCTCTGC
CCGTGTCGCTGCGAGCACGCCAGCCGCTGTTCACCGCACCCAGGCCAGAG
GCCAATTCAGCCGCCAGTTCAGCCGCCGATACGGCCGCCACACAGCGCCG
CGCTCAACCCGCCAACGTCTCGTCGCTGGCGGCGTTGCCAGCGGCGCCTG
TCTCCACGCTGTCGCCCGTGGCCGACTGGACGCCCATGCGATTGCCCCGC
CACCAGCAACTGCTGACCAGCGTGTTGCGCTGCAACTGCACACGCGTAGC
AGAGGCGCTCTACAAGATTGTCAAGCTGTTCGGCGTGCGCACGCTGTGCG
ATGTGCCCGCCGCATCGCACGCCTCGTGGATGCTGCCGGTGGTCAATCGC
CTCACGTTCGAGACGCCGTCGTTTCGGTACATCGCCATCGACGACGACCA
CGCGCTGCTCCGCAATGTGGCGCGACGCTACCAGCACGTGGTGGACGCCG
AGTTCGTGCCCGGGCTGCAACCGCGCTCGCTGCAGGCGTGCGAACTGCTC
TTCTACTGGCCGGCGTGCGGCGCCGCCTGGCACGCGGCGCAGACGCAGTC
CACGCTGCGCGTATTGCAGCACGCGCCGGCGGTGCTGCGCATGGCCAAGG
ACGCGCGCTGCGCGCTGATGCTGTTCCCGCAAACGCCCGATGCTCCGCGC
AACCGCACGCTGGCCTTCCGCGCGGGGCGCTGGACCGTCATGGAGAAGGC
GCGCTCGCCGGCGGCACGCCCGCCTTTCATGCTCAACGACTTTGTCAAGG
GCGCCATCCCCATCGGCAACCTCACGCATCGCGACGCTCTGTACATGACT
CTCTACTCGCTCTCCGCCATCCCGCGCGCCGCGCTCTCCATGCGCCCGTG
A
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Coding sequence (CDS) from alignment at ScGOVlb_2952:183943..184893-

>Gvermi777.t1 ID=Gvermi777.t1|Name=Gvermi777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=951bp|location=Sequence derived from alignment at ScGOVlb_2952:183943..184893- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCGCCGTCGTGCGCGCCGCGCGTCTTCCGCGGGATTTGCGTCGTC
GCTGGGGTGCCTGCGCGCGCTAGGCATCGCCCTACTGCTGGTTGCTCTGC
CCGTGTCGCTGCGAGCACGCCAGCCGCTGTTCACCGCACCCAGGCCAGAG
GCCAATTCAGCCGCCAGTTCAGCCGCCGATACGGCCGCCACACAGCGCCG
CGCTCAACCCGCCAACGTCTCGTCGCTGGCGGCGTTGCCAGCGGCGCCTG
TCTCCACGCTGTCGCCCGTGGCCGACTGGACGCCCATGCGATTGCCCCGC
CACCAGCAACTGCTGACCAGCGTGTTGCGCTGCAACTGCACACGCGTAGC
AGAGGCGCTCTACAAGATTGTCAAGCTGTTCGGCGTGCGCACGCTGTGCG
ATGTGCCCGCCGCATCGCACGCCTCGTGGATGCTGCCGGTGGTCAATCGC
CTCACGTTCGAGACGCCGTCGTTTCGGTACATCGCCATCGACGACGACCA
CGCGCTGCTCCGCAATGTGGCGCGACGCTACCAGCACGTGGTGGACGCCG
AGTTCGTGCCCGGGCTGCAACCGCGCTCGCTGCAGGCGTGCGAACTGCTC
TTCTACTGGCCGGCGTGCGGCGCCGCCTGGCACGCGGCGCAGACGCAGTC
CACGCTGCGCGTATTGCAGCACGCGCCGGCGGTGCTGCGCATGGCCAAGG
ACGCGCGCTGCGCGCTGATGCTGTTCCCGCAAACGCCCGATGCTCCGCGC
AACCGCACGCTGGCCTTCCGCGCGGGGCGCTGGACCGTCATGGAGAAGGC
GCGCTCGCCGGCGGCACGCCCGCCTTTCATGCTCAACGACTTTGTCAAGG
GCGCCATCCCCATCGGCAACCTCACGCATCGCGACGCTCTGTACATGACT
CTCTACTCGCTCTCCGCCATCCCGCGCGCCGCGCTCTCCATGCGCCCGTG
A
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