Gvermi813.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi813.t1
Unique NameGvermi813.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length373
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:445647..446831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi813Gvermi813Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 445647..446831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi813.t1Gvermi813.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 445647..446831 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi813.t1.start1Gvermi813.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 445647..445649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi813.t1.CDS1Gvermi813.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 445647..445672 +
Gvermi813.t1.CDS2Gvermi813.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 445739..446831 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi813.t1.exon1Gvermi813.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 445647..445672 +
Gvermi813.t1.exon2Gvermi813.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 445739..446831 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi813.t1.intron1Gvermi813.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 445673..445738 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi813.t1.stop1Gvermi813.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 446829..446831 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi813.t1 ID=Gvermi813.t1|Name=Gvermi813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=373bp
LFAEKSVVFRTLSFVYQNSKPINELAKQMQTAIWNSESAELNDVDPTYSP
CNSGRMRENRNGEDTIVPSCSTSSSLFLNLQLDIRNEEQDVTSYEHGSGT
LVSQICPETSSPSFLVTYILKVVLSPTIGEGSVEAMDDNITKPNEGFERT
THVVNLSEEEKRAERNRKGRERSMRTRRRNAAHLKMLENGCTKLIMENQL
LRDLLSNLQMVPSREEKVTSLLRHLLSRNLPTILHPAGELSQAFLSASMK
PVLTYEKTNSSVEDKDGPRACDKLHEPCSSLRHHSQTSILGKARKNDTYA
PRNWKPQRCLKSLPESSNVSKTSTSIQKGSEIKGESVSQGHFHISVCDTS
EIRQEDKLVDFSLDEIDAVISL*
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spliced messenger RNA

>Gvermi813.t1 ID=Gvermi813.t1|Name=Gvermi813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at ScGOVlb_2952:445647..446831+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTTCGCTGAGAAAAGTGTTGTATTTCGCACCTTATCTTTCGTGTATCA
GAACAGTAAGCCGATAAACGAGCTCGCGAAACAGATGCAAACTGCTATCT
GGAATTCTGAATCGGCTGAACTTAATGATGTCGATCCAACATACTCACCT
TGCAATTCCGGTCGAATGCGTGAAAATCGAAACGGAGAAGACACCATTGT
TCCAAGCTGCTCAACTTCTTCATCTCTATTTTTGAACTTGCAATTAGATA
TAAGAAATGAGGAACAAGATGTTACGAGTTATGAACATGGAAGTGGCACG
CTTGTATCGCAGATTTGTCCTGAAACTAGCAGCCCGTCGTTTTTGGTGAC
TTATATACTCAAGGTAGTTCTCTCTCCAACGATTGGAGAAGGGAGTGTGG
AAGCAATGGATGACAACATAACTAAGCCGAATGAGGGATTTGAGCGCACA
ACACATGTGGTTAATCTGAGTGAAGAAGAGAAAAGAGCTGAAAGAAACCG
TAAAGGTCGTGAACGCAGTATGCGTACACGACGTAGAAACGCCGCACACT
TGAAGATGTTGGAAAACGGATGCACTAAACTCATAATGGAAAACCAGTTG
CTGAGAGACCTTCTTAGTAATCTACAGATGGTGCCGTCGAGAGAAGAGAA
GGTCACTTCCCTGTTGCGGCACCTTCTATCCCGTAATCTTCCGACTATAC
TTCACCCCGCTGGTGAGCTATCACAAGCTTTTCTCTCAGCATCTATGAAA
CCAGTGCTAACATACGAAAAGACGAACTCGAGTGTTGAAGATAAAGACGG
TCCACGCGCTTGTGACAAGCTCCACGAGCCATGTTCGTCGCTTCGCCATC
ATAGCCAGACAAGCATTCTCGGTAAAGCAAGGAAGAACGACACATATGCA
CCCCGGAACTGGAAACCACAGCGATGTTTGAAGAGTTTACCGGAAAGCTC
AAACGTTTCGAAGACTTCCACTTCGATTCAGAAGGGCTCAGAAATAAAGG
GCGAATCCGTTTCTCAAGGTCATTTTCATATTTCAGTCTGTGACACCAGT
GAAATTCGTCAAGAAGACAAGTTGGTTGATTTCAGCCTGGATGAAATTGA
TGCTGTCATATCCCTCTAG
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protein sequence of Gvermi813.t1

>Gvermi813.t1 ID=Gvermi813.t1|Name=Gvermi813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=373bp
LFAEKSVVFRTLSFVYQNSKPINELAKQMQTAIWNSESAELNDVDPTYSP
CNSGRMRENRNGEDTIVPSCSTSSSLFLNLQLDIRNEEQDVTSYEHGSGT
LVSQICPETSSPSFLVTYILKVVLSPTIGEGSVEAMDDNITKPNEGFERT
THVVNLSEEEKRAERNRKGRERSMRTRRRNAAHLKMLENGCTKLIMENQL
LRDLLSNLQMVPSREEKVTSLLRHLLSRNLPTILHPAGELSQAFLSASMK
PVLTYEKTNSSVEDKDGPRACDKLHEPCSSLRHHSQTSILGKARKNDTYA
PRNWKPQRCLKSLPESSNVSKTSTSIQKGSEIKGESVSQGHFHISVCDTS
EIRQEDKLVDFSLDEIDAVISL*
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mRNA from alignment at ScGOVlb_2952:445647..446831+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi813.t1 ID=Gvermi813.t1|Name=Gvermi813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1185bp|location=Sequence derived from alignment at ScGOVlb_2952:445647..446831+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGTTCGCTGAGAAAAGTGTTGTATTGTATGTACAGAGTCGTTTCAAAGT
GGGATCTTGAGCCCAGCCAACTTCTGACCTCAACACACATAGTCGCACCT
TATCTTTCGTGTATCAGAACAGTAAGCCGATAAACGAGCTCGCGAAACAG
ATGCAAACTGCTATCTGGAATTCTGAATCGGCTGAACTTAATGATGTCGA
TCCAACATACTCACCTTGCAATTCCGGTCGAATGCGTGAAAATCGAAACG
GAGAAGACACCATTGTTCCAAGCTGCTCAACTTCTTCATCTCTATTTTTG
AACTTGCAATTAGATATAAGAAATGAGGAACAAGATGTTACGAGTTATGA
ACATGGAAGTGGCACGCTTGTATCGCAGATTTGTCCTGAAACTAGCAGCC
CGTCGTTTTTGGTGACTTATATACTCAAGGTAGTTCTCTCTCCAACGATT
GGAGAAGGGAGTGTGGAAGCAATGGATGACAACATAACTAAGCCGAATGA
GGGATTTGAGCGCACAACACATGTGGTTAATCTGAGTGAAGAAGAGAAAA
GAGCTGAAAGAAACCGTAAAGGTCGTGAACGCAGTATGCGTACACGACGT
AGAAACGCCGCACACTTGAAGATGTTGGAAAACGGATGCACTAAACTCAT
AATGGAAAACCAGTTGCTGAGAGACCTTCTTAGTAATCTACAGATGGTGC
CGTCGAGAGAAGAGAAGGTCACTTCCCTGTTGCGGCACCTTCTATCCCGT
AATCTTCCGACTATACTTCACCCCGCTGGTGAGCTATCACAAGCTTTTCT
CTCAGCATCTATGAAACCAGTGCTAACATACGAAAAGACGAACTCGAGTG
TTGAAGATAAAGACGGTCCACGCGCTTGTGACAAGCTCCACGAGCCATGT
TCGTCGCTTCGCCATCATAGCCAGACAAGCATTCTCGGTAAAGCAAGGAA
GAACGACACATATGCACCCCGGAACTGGAAACCACAGCGATGTTTGAAGA
GTTTACCGGAAAGCTCAAACGTTTCGAAGACTTCCACTTCGATTCAGAAG
GGCTCAGAAATAAAGGGCGAATCCGTTTCTCAAGGTCATTTTCATATTTC
AGTCTGTGACACCAGTGAAATTCGTCAAGAAGACAAGTTGGTTGATTTCA
GCCTGGATGAAATTGATGCTGTCATATCCCTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_2952:445647..446831+

>Gvermi813.t1 ID=Gvermi813.t1|Name=Gvermi813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1119bp|location=Sequence derived from alignment at ScGOVlb_2952:445647..446831+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGTTCGCTGAGAAAAGTGTTGTATTTCGCACCTTATCTTTCGTGTATCA
GAACAGTAAGCCGATAAACGAGCTCGCGAAACAGATGCAAACTGCTATCT
GGAATTCTGAATCGGCTGAACTTAATGATGTCGATCCAACATACTCACCT
TGCAATTCCGGTCGAATGCGTGAAAATCGAAACGGAGAAGACACCATTGT
TCCAAGCTGCTCAACTTCTTCATCTCTATTTTTGAACTTGCAATTAGATA
TAAGAAATGAGGAACAAGATGTTACGAGTTATGAACATGGAAGTGGCACG
CTTGTATCGCAGATTTGTCCTGAAACTAGCAGCCCGTCGTTTTTGGTGAC
TTATATACTCAAGGTAGTTCTCTCTCCAACGATTGGAGAAGGGAGTGTGG
AAGCAATGGATGACAACATAACTAAGCCGAATGAGGGATTTGAGCGCACA
ACACATGTGGTTAATCTGAGTGAAGAAGAGAAAAGAGCTGAAAGAAACCG
TAAAGGTCGTGAACGCAGTATGCGTACACGACGTAGAAACGCCGCACACT
TGAAGATGTTGGAAAACGGATGCACTAAACTCATAATGGAAAACCAGTTG
CTGAGAGACCTTCTTAGTAATCTACAGATGGTGCCGTCGAGAGAAGAGAA
GGTCACTTCCCTGTTGCGGCACCTTCTATCCCGTAATCTTCCGACTATAC
TTCACCCCGCTGGTGAGCTATCACAAGCTTTTCTCTCAGCATCTATGAAA
CCAGTGCTAACATACGAAAAGACGAACTCGAGTGTTGAAGATAAAGACGG
TCCACGCGCTTGTGACAAGCTCCACGAGCCATGTTCGTCGCTTCGCCATC
ATAGCCAGACAAGCATTCTCGGTAAAGCAAGGAAGAACGACACATATGCA
CCCCGGAACTGGAAACCACAGCGATGTTTGAAGAGTTTACCGGAAAGCTC
AAACGTTTCGAAGACTTCCACTTCGATTCAGAAGGGCTCAGAAATAAAGG
GCGAATCCGTTTCTCAAGGTCATTTTCATATTTCAGTCTGTGACACCAGT
GAAATTCGTCAAGAAGACAAGTTGGTTGATTTCAGCCTGGATGAAATTGA
TGCTGTCATATCCCTCTAG
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