Gvermi794.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi794.t1
Unique NameGvermi794.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length775
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:296365..298689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi794Gvermi794Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 296365..298689 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi794.t1.stop1Gvermi794.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 296365..296367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi794.t1.CDS1Gvermi794.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 296365..298689 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi794.t1.exon1Gvermi794.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 296365..298689 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi794.t1.start1Gvermi794.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 298687..298689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi794.t1Gvermi794.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 296365..298689 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi794.t1 ID=Gvermi794.t1|Name=Gvermi794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=775bp
LYDALPWVFRVTNISAQETRARALWENHIVLSNDNRILIPETFESRWNVE
VAPLLENQFHRMWNELPRMQCLNGENAFAAFSLQESESLPVTVSFEKVCN
HDTLPGSCTQERQIHDLRQLTINLPSKSSRSSYSINIAMKRPIRPTDASI
DPDVMVGVVKGVVHFHLSDSSKIALVRYCDERRQHFSDSITQGFTPSNNI
KHIISMYELKRMYALISKNRRGVSYFTELWDANELSTVVLDPVEHSWHPQ
IRTNVKRSRLRREDFVSGQHKLRDAAENIANDGETDAISSELGNSEEKEA
LKGTELFRDASNATNSSLEVVNKKNTSDVSELASSINEYKNESTLSESVP
GQIPGQNDEQRETPDEDENYPDLPSDADESDDDDDSTTENQSQDEGGEVQ
LSGNARPDEQHSNTKQEPKLSETGESAPTTRPLSVSLPQYARDRDILSDP
RASGVAQSQPASIPHSQMNAEDAGKMIQEHSSQDQMNPLETSWNQSPTQN
SLSGLRNEEPNRSIPRRANDFPQSSQNDHPSQKSASSVENADGAIEYYQS
SQSSPRGSDRVPPLRDGSLQVGSAEHPMGNVQSAPGFSRVPYSEADRTGE
QHSQTAPVPIRRAEPSHEQIFPGRRYPTRQTGIPRQPQVRIDSRRFSPRM
TDLDAHQENHMSDNLPSSKKLDRPHAQPINGIHNHLPSRKESHLQIHGRS
PAEPVRDGRATADSRATARTQHHGEQIRGISTLQDGILYKDTSSQRSMTK
QPQKTGPYQDTIIPSMPRGMRHMS*
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spliced messenger RNA

>Gvermi794.t1 ID=Gvermi794.t1|Name=Gvermi794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2325bp|location=Sequence derived from alignment at ScGOVlb_2952:296365..298689- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTACGATGCGCTCCCTTGGGTGTTCAGGGTAACAAACATTTCCGCACA
AGAAACCAGAGCAAGGGCTTTGTGGGAGAATCACATCGTGCTTAGCAATG
ATAATCGAATACTTATCCCGGAAACATTTGAAAGCCGTTGGAATGTTGAA
GTGGCACCGCTACTTGAAAACCAGTTTCATCGGATGTGGAATGAGTTGCC
AAGAATGCAATGTCTGAATGGAGAGAATGCTTTTGCCGCTTTTTCATTGC
AGGAATCAGAGAGTTTGCCGGTGACAGTTTCTTTCGAAAAAGTATGCAAT
CATGACACCTTGCCTGGAAGCTGCACTCAAGAAAGACAGATTCATGATCT
TAGACAGCTGACTATCAATCTGCCGTCAAAATCGAGTCGCTCGTCTTATT
CTATTAACATAGCGATGAAGAGACCCATAAGGCCAACTGACGCCAGCATT
GACCCAGACGTTATGGTGGGGGTGGTGAAAGGTGTTGTCCATTTTCATCT
TTCAGATTCCTCAAAAATAGCCCTCGTACGTTACTGTGATGAGAGACGAC
AACATTTCTCGGACAGTATTACGCAAGGATTTACACCTTCAAACAATATC
AAACATATAATATCCATGTACGAACTCAAGCGGATGTACGCCTTGATTTC
GAAAAACAGAAGAGGAGTATCCTACTTCACAGAGCTTTGGGATGCAAATG
AACTCTCCACTGTAGTTCTTGACCCAGTTGAACATTCATGGCATCCGCAG
ATAAGAACAAATGTGAAGCGATCAAGATTGCGCCGGGAAGATTTTGTCAG
TGGGCAGCACAAGCTTAGAGATGCCGCTGAAAACATAGCGAACGATGGAG
AAACAGATGCAATATCTTCTGAACTAGGAAATTCAGAAGAAAAAGAAGCT
TTGAAAGGTACAGAATTGTTTAGAGATGCATCAAACGCTACCAACTCTTC
CCTTGAAGTCGTGAATAAGAAAAACACGAGTGACGTATCTGAGCTTGCAT
CTTCAATCAATGAATATAAAAACGAGTCCACGTTGTCAGAGAGTGTGCCT
GGACAAATTCCAGGCCAAAATGATGAACAGAGAGAGACCCCGGATGAGGA
TGAAAATTATCCTGACCTTCCGTCGGACGCGGATGAATCAGATGATGATG
ATGATAGCACCACAGAAAATCAAAGCCAGGACGAGGGTGGAGAAGTTCAA
CTAAGTGGGAACGCGCGCCCGGACGAGCAACATTCTAACACCAAACAAGA
ACCAAAACTTTCTGAGACTGGGGAGTCGGCCCCGACAACCAGGCCTCTTT
CGGTTTCTCTGCCCCAGTATGCACGAGATCGTGACATTCTATCAGATCCT
CGAGCCTCTGGCGTTGCACAGTCGCAACCGGCAAGCATTCCACACTCTCA
AATGAACGCAGAGGACGCAGGTAAAATGATCCAAGAACATAGCTCTCAGG
ATCAGATGAATCCGCTCGAAACCAGCTGGAACCAATCGCCTACCCAGAAC
TCTCTTTCGGGCCTTAGAAACGAAGAACCCAACCGGAGCATACCGCGACG
AGCTAACGACTTTCCTCAGTCTAGTCAAAATGATCACCCTTCTCAAAAAT
CAGCTTCTTCGGTCGAGAACGCAGACGGGGCAATTGAATACTATCAAAGC
TCGCAAAGTTCGCCACGAGGCAGTGATCGCGTGCCTCCTCTTCGAGATGG
TTCGTTGCAGGTCGGAAGTGCGGAACACCCAATGGGCAACGTTCAGTCTG
CTCCTGGTTTTTCAAGAGTGCCATATTCTGAGGCTGATCGTACAGGCGAG
CAACATTCTCAAACTGCTCCGGTGCCAATAAGAAGAGCTGAACCGTCACA
TGAGCAAATTTTCCCTGGTCGGAGGTATCCAACAAGACAAACAGGCATTC
CGCGACAGCCTCAAGTTCGAATTGATTCGCGAAGGTTCTCACCGCGAATG
ACAGATCTGGACGCACACCAAGAGAATCATATGTCGGATAACTTACCTTC
ATCAAAAAAGCTGGACCGACCGCATGCCCAGCCGATAAACGGTATTCATA
ACCACCTTCCGAGCCGAAAAGAATCCCATCTGCAAATTCATGGTCGGAGC
CCTGCAGAACCTGTGAGAGACGGCAGAGCAACAGCCGATTCAAGAGCAAC
TGCACGTACACAGCATCACGGCGAACAAATACGCGGTATCAGTACGCTTC
AAGATGGTATCCTGTATAAAGATACATCCTCTCAAAGAAGTATGACAAAG
CAACCTCAGAAGACCGGACCATACCAAGATACCATCATTCCGAGTATGCC
CCGTGGCATGAGACATATGAGTTAA
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protein sequence of Gvermi794.t1

>Gvermi794.t1 ID=Gvermi794.t1|Name=Gvermi794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=775bp
LYDALPWVFRVTNISAQETRARALWENHIVLSNDNRILIPETFESRWNVE
VAPLLENQFHRMWNELPRMQCLNGENAFAAFSLQESESLPVTVSFEKVCN
HDTLPGSCTQERQIHDLRQLTINLPSKSSRSSYSINIAMKRPIRPTDASI
DPDVMVGVVKGVVHFHLSDSSKIALVRYCDERRQHFSDSITQGFTPSNNI
KHIISMYELKRMYALISKNRRGVSYFTELWDANELSTVVLDPVEHSWHPQ
IRTNVKRSRLRREDFVSGQHKLRDAAENIANDGETDAISSELGNSEEKEA
LKGTELFRDASNATNSSLEVVNKKNTSDVSELASSINEYKNESTLSESVP
GQIPGQNDEQRETPDEDENYPDLPSDADESDDDDDSTTENQSQDEGGEVQ
LSGNARPDEQHSNTKQEPKLSETGESAPTTRPLSVSLPQYARDRDILSDP
RASGVAQSQPASIPHSQMNAEDAGKMIQEHSSQDQMNPLETSWNQSPTQN
SLSGLRNEEPNRSIPRRANDFPQSSQNDHPSQKSASSVENADGAIEYYQS
SQSSPRGSDRVPPLRDGSLQVGSAEHPMGNVQSAPGFSRVPYSEADRTGE
QHSQTAPVPIRRAEPSHEQIFPGRRYPTRQTGIPRQPQVRIDSRRFSPRM
TDLDAHQENHMSDNLPSSKKLDRPHAQPINGIHNHLPSRKESHLQIHGRS
PAEPVRDGRATADSRATARTQHHGEQIRGISTLQDGILYKDTSSQRSMTK
QPQKTGPYQDTIIPSMPRGMRHMS*
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mRNA from alignment at ScGOVlb_2952:296365..298689-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi794.t1 ID=Gvermi794.t1|Name=Gvermi794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2325bp|location=Sequence derived from alignment at ScGOVlb_2952:296365..298689- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTACGATGCGCTCCCTTGGGTGTTCAGGGTAACAAACATTTCCGCACA
AGAAACCAGAGCAAGGGCTTTGTGGGAGAATCACATCGTGCTTAGCAATG
ATAATCGAATACTTATCCCGGAAACATTTGAAAGCCGTTGGAATGTTGAA
GTGGCACCGCTACTTGAAAACCAGTTTCATCGGATGTGGAATGAGTTGCC
AAGAATGCAATGTCTGAATGGAGAGAATGCTTTTGCCGCTTTTTCATTGC
AGGAATCAGAGAGTTTGCCGGTGACAGTTTCTTTCGAAAAAGTATGCAAT
CATGACACCTTGCCTGGAAGCTGCACTCAAGAAAGACAGATTCATGATCT
TAGACAGCTGACTATCAATCTGCCGTCAAAATCGAGTCGCTCGTCTTATT
CTATTAACATAGCGATGAAGAGACCCATAAGGCCAACTGACGCCAGCATT
GACCCAGACGTTATGGTGGGGGTGGTGAAAGGTGTTGTCCATTTTCATCT
TTCAGATTCCTCAAAAATAGCCCTCGTACGTTACTGTGATGAGAGACGAC
AACATTTCTCGGACAGTATTACGCAAGGATTTACACCTTCAAACAATATC
AAACATATAATATCCATGTACGAACTCAAGCGGATGTACGCCTTGATTTC
GAAAAACAGAAGAGGAGTATCCTACTTCACAGAGCTTTGGGATGCAAATG
AACTCTCCACTGTAGTTCTTGACCCAGTTGAACATTCATGGCATCCGCAG
ATAAGAACAAATGTGAAGCGATCAAGATTGCGCCGGGAAGATTTTGTCAG
TGGGCAGCACAAGCTTAGAGATGCCGCTGAAAACATAGCGAACGATGGAG
AAACAGATGCAATATCTTCTGAACTAGGAAATTCAGAAGAAAAAGAAGCT
TTGAAAGGTACAGAATTGTTTAGAGATGCATCAAACGCTACCAACTCTTC
CCTTGAAGTCGTGAATAAGAAAAACACGAGTGACGTATCTGAGCTTGCAT
CTTCAATCAATGAATATAAAAACGAGTCCACGTTGTCAGAGAGTGTGCCT
GGACAAATTCCAGGCCAAAATGATGAACAGAGAGAGACCCCGGATGAGGA
TGAAAATTATCCTGACCTTCCGTCGGACGCGGATGAATCAGATGATGATG
ATGATAGCACCACAGAAAATCAAAGCCAGGACGAGGGTGGAGAAGTTCAA
CTAAGTGGGAACGCGCGCCCGGACGAGCAACATTCTAACACCAAACAAGA
ACCAAAACTTTCTGAGACTGGGGAGTCGGCCCCGACAACCAGGCCTCTTT
CGGTTTCTCTGCCCCAGTATGCACGAGATCGTGACATTCTATCAGATCCT
CGAGCCTCTGGCGTTGCACAGTCGCAACCGGCAAGCATTCCACACTCTCA
AATGAACGCAGAGGACGCAGGTAAAATGATCCAAGAACATAGCTCTCAGG
ATCAGATGAATCCGCTCGAAACCAGCTGGAACCAATCGCCTACCCAGAAC
TCTCTTTCGGGCCTTAGAAACGAAGAACCCAACCGGAGCATACCGCGACG
AGCTAACGACTTTCCTCAGTCTAGTCAAAATGATCACCCTTCTCAAAAAT
CAGCTTCTTCGGTCGAGAACGCAGACGGGGCAATTGAATACTATCAAAGC
TCGCAAAGTTCGCCACGAGGCAGTGATCGCGTGCCTCCTCTTCGAGATGG
TTCGTTGCAGGTCGGAAGTGCGGAACACCCAATGGGCAACGTTCAGTCTG
CTCCTGGTTTTTCAAGAGTGCCATATTCTGAGGCTGATCGTACAGGCGAG
CAACATTCTCAAACTGCTCCGGTGCCAATAAGAAGAGCTGAACCGTCACA
TGAGCAAATTTTCCCTGGTCGGAGGTATCCAACAAGACAAACAGGCATTC
CGCGACAGCCTCAAGTTCGAATTGATTCGCGAAGGTTCTCACCGCGAATG
ACAGATCTGGACGCACACCAAGAGAATCATATGTCGGATAACTTACCTTC
ATCAAAAAAGCTGGACCGACCGCATGCCCAGCCGATAAACGGTATTCATA
ACCACCTTCCGAGCCGAAAAGAATCCCATCTGCAAATTCATGGTCGGAGC
CCTGCAGAACCTGTGAGAGACGGCAGAGCAACAGCCGATTCAAGAGCAAC
TGCACGTACACAGCATCACGGCGAACAAATACGCGGTATCAGTACGCTTC
AAGATGGTATCCTGTATAAAGATACATCCTCTCAAAGAAGTATGACAAAG
CAACCTCAGAAGACCGGACCATACCAAGATACCATCATTCCGAGTATGCC
CCGTGGCATGAGACATATGAGTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:296365..298689-

>Gvermi794.t1 ID=Gvermi794.t1|Name=Gvermi794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2325bp|location=Sequence derived from alignment at ScGOVlb_2952:296365..298689- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTACGATGCGCTCCCTTGGGTGTTCAGGGTAACAAACATTTCCGCACA
AGAAACCAGAGCAAGGGCTTTGTGGGAGAATCACATCGTGCTTAGCAATG
ATAATCGAATACTTATCCCGGAAACATTTGAAAGCCGTTGGAATGTTGAA
GTGGCACCGCTACTTGAAAACCAGTTTCATCGGATGTGGAATGAGTTGCC
AAGAATGCAATGTCTGAATGGAGAGAATGCTTTTGCCGCTTTTTCATTGC
AGGAATCAGAGAGTTTGCCGGTGACAGTTTCTTTCGAAAAAGTATGCAAT
CATGACACCTTGCCTGGAAGCTGCACTCAAGAAAGACAGATTCATGATCT
TAGACAGCTGACTATCAATCTGCCGTCAAAATCGAGTCGCTCGTCTTATT
CTATTAACATAGCGATGAAGAGACCCATAAGGCCAACTGACGCCAGCATT
GACCCAGACGTTATGGTGGGGGTGGTGAAAGGTGTTGTCCATTTTCATCT
TTCAGATTCCTCAAAAATAGCCCTCGTACGTTACTGTGATGAGAGACGAC
AACATTTCTCGGACAGTATTACGCAAGGATTTACACCTTCAAACAATATC
AAACATATAATATCCATGTACGAACTCAAGCGGATGTACGCCTTGATTTC
GAAAAACAGAAGAGGAGTATCCTACTTCACAGAGCTTTGGGATGCAAATG
AACTCTCCACTGTAGTTCTTGACCCAGTTGAACATTCATGGCATCCGCAG
ATAAGAACAAATGTGAAGCGATCAAGATTGCGCCGGGAAGATTTTGTCAG
TGGGCAGCACAAGCTTAGAGATGCCGCTGAAAACATAGCGAACGATGGAG
AAACAGATGCAATATCTTCTGAACTAGGAAATTCAGAAGAAAAAGAAGCT
TTGAAAGGTACAGAATTGTTTAGAGATGCATCAAACGCTACCAACTCTTC
CCTTGAAGTCGTGAATAAGAAAAACACGAGTGACGTATCTGAGCTTGCAT
CTTCAATCAATGAATATAAAAACGAGTCCACGTTGTCAGAGAGTGTGCCT
GGACAAATTCCAGGCCAAAATGATGAACAGAGAGAGACCCCGGATGAGGA
TGAAAATTATCCTGACCTTCCGTCGGACGCGGATGAATCAGATGATGATG
ATGATAGCACCACAGAAAATCAAAGCCAGGACGAGGGTGGAGAAGTTCAA
CTAAGTGGGAACGCGCGCCCGGACGAGCAACATTCTAACACCAAACAAGA
ACCAAAACTTTCTGAGACTGGGGAGTCGGCCCCGACAACCAGGCCTCTTT
CGGTTTCTCTGCCCCAGTATGCACGAGATCGTGACATTCTATCAGATCCT
CGAGCCTCTGGCGTTGCACAGTCGCAACCGGCAAGCATTCCACACTCTCA
AATGAACGCAGAGGACGCAGGTAAAATGATCCAAGAACATAGCTCTCAGG
ATCAGATGAATCCGCTCGAAACCAGCTGGAACCAATCGCCTACCCAGAAC
TCTCTTTCGGGCCTTAGAAACGAAGAACCCAACCGGAGCATACCGCGACG
AGCTAACGACTTTCCTCAGTCTAGTCAAAATGATCACCCTTCTCAAAAAT
CAGCTTCTTCGGTCGAGAACGCAGACGGGGCAATTGAATACTATCAAAGC
TCGCAAAGTTCGCCACGAGGCAGTGATCGCGTGCCTCCTCTTCGAGATGG
TTCGTTGCAGGTCGGAAGTGCGGAACACCCAATGGGCAACGTTCAGTCTG
CTCCTGGTTTTTCAAGAGTGCCATATTCTGAGGCTGATCGTACAGGCGAG
CAACATTCTCAAACTGCTCCGGTGCCAATAAGAAGAGCTGAACCGTCACA
TGAGCAAATTTTCCCTGGTCGGAGGTATCCAACAAGACAAACAGGCATTC
CGCGACAGCCTCAAGTTCGAATTGATTCGCGAAGGTTCTCACCGCGAATG
ACAGATCTGGACGCACACCAAGAGAATCATATGTCGGATAACTTACCTTC
ATCAAAAAAGCTGGACCGACCGCATGCCCAGCCGATAAACGGTATTCATA
ACCACCTTCCGAGCCGAAAAGAATCCCATCTGCAAATTCATGGTCGGAGC
CCTGCAGAACCTGTGAGAGACGGCAGAGCAACAGCCGATTCAAGAGCAAC
TGCACGTACACAGCATCACGGCGAACAAATACGCGGTATCAGTACGCTTC
AAGATGGTATCCTGTATAAAGATACATCCTCTCAAAGAAGTATGACAAAG
CAACCTCAGAAGACCGGACCATACCAAGATACCATCATTCCGAGTATGCC
CCGTGGCATGAGACATATGAGTTAA
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