Gvermi778.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi778.t1
Unique NameGvermi778.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length484
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:185421..186872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi778Gvermi778Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 185421..186872 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi778.t1.start1Gvermi778.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 185421..185423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi778.t1.CDS1Gvermi778.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 185421..186872 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi778.t1.exon1Gvermi778.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 185421..186872 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi778.t1.stop1Gvermi778.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 186870..186872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi778.t1Gvermi778.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 185421..186872 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi778.t1 ID=Gvermi778.t1|Name=Gvermi778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=484bp
MCPSPAADPSEQPLIAVKDYRPSTHGSSSSDGPDSTDEDCYQFEEQPSKP
CPFAQTPRVSKYGKTYRTRHAAGSWEEKPVITTIETPVQLRCWSINGPDE
TGDHEDNREIVYMDEHITVHMKDMELINLQWELDNLRPGPPARIGKLSPL
QKSHISRAHPLVLPRPKYHASAVGFGVPKSCFDAVADMLTAEGRLVEEPS
SLSDSSSDSADQFDFNCSSDTDSSPHFKFGLHSSTELHSMSKQSSDQLSE
QSSSDERLAAALLSNTLTENDRQHEATVDVTLQSDSSESRLAQSQALLQF
LALRVEKLVHVTASLQERVAVSFNERQQLQEQLLALKASCRSAGHPTSPR
NADANGFANADQQACSKPRSPRKKRKSTTREEDRLRKELMAEKQRTAQVQ
LENDRLLGVIFKLKKEMELEHDLMMRIEKKLAQDQACRRAQRHRSVAKPR
NLSRDPKKKVEQRRRWIFSRSKSSTSKKCEPHM*
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spliced messenger RNA

>Gvermi778.t1 ID=Gvermi778.t1|Name=Gvermi778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at ScGOVlb_2952:185421..186872+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCCCAGCCCAGCCGCAGACCCCTCCGAACAGCCGCTCATCGCCGT
TAAGGACTACCGCCCGTCCACCCACGGCTCCAGCAGCAGCGATGGTCCGG
ACAGCACCGACGAAGATTGCTACCAGTTTGAAGAACAGCCCTCCAAACCG
TGCCCCTTCGCCCAGACCCCGCGCGTTTCCAAGTACGGAAAAACCTACCG
TACGCGCCATGCCGCCGGCTCCTGGGAAGAAAAGCCTGTCATCACCACCA
TCGAAACCCCCGTCCAGCTGCGATGCTGGTCTATCAATGGACCTGATGAG
ACCGGCGATCACGAAGACAACCGCGAGATTGTATACATGGATGAACACAT
CACTGTTCACATGAAAGACATGGAGCTCATCAACCTGCAGTGGGAGCTGG
ACAATCTCCGCCCCGGTCCGCCCGCCCGCATCGGCAAGCTCTCCCCGCTT
CAGAAAAGCCATATCTCTCGCGCCCATCCCCTCGTCCTCCCGCGCCCCAA
ATACCACGCTTCCGCCGTCGGTTTCGGCGTTCCCAAGTCTTGTTTCGACG
CCGTAGCCGACATGTTGACCGCGGAGGGCAGACTGGTAGAAGAACCCTCC
TCCTTGTCTGACTCTTCATCAGACAGCGCCGACCAATTCGACTTCAATTG
CTCGTCAGACACTGATTCCTCTCCACACTTCAAGTTTGGTTTACACTCCA
GCACAGAGCTCCACAGCATGTCGAAGCAGTCGTCAGACCAACTCTCCGAG
CAGAGCAGCTCCGATGAACGCCTCGCCGCAGCGCTACTTTCAAACACGCT
CACTGAGAATGACCGCCAACACGAAGCAACCGTCGATGTCACTCTGCAAT
CAGATTCTTCCGAGAGCCGACTTGCCCAATCACAAGCACTGCTGCAATTC
CTGGCGCTGCGGGTTGAAAAGTTGGTGCATGTCACCGCCTCTCTTCAAGA
AAGAGTGGCCGTCAGCTTCAACGAAAGGCAGCAGCTGCAGGAGCAGCTTC
TGGCCTTGAAGGCTTCGTGTCGCTCCGCGGGGCATCCAACTTCGCCCAGG
AACGCAGATGCCAACGGGTTCGCCAACGCTGACCAGCAAGCCTGCTCAAA
GCCGAGATCGCCGCGAAAGAAGCGGAAGAGCACAACCCGCGAGGAGGACA
GATTGAGGAAGGAGTTGATGGCTGAAAAACAACGAACCGCGCAAGTGCAG
CTGGAGAATGACAGGCTGCTGGGGGTCATTTTCAAGCTCAAGAAGGAGAT
GGAGCTTGAGCACGATCTGATGATGAGAATTGAGAAAAAGCTTGCGCAGG
ACCAAGCTTGTCGAAGAGCGCAACGACACAGATCCGTTGCCAAGCCACGC
AACTTGTCTAGGGATCCCAAGAAGAAGGTGGAGCAGCGACGGAGGTGGAT
TTTCAGTAGAAGCAAAAGCTCGACGTCAAAAAAATGTGAACCGCATATGT
AA
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protein sequence of Gvermi778.t1

>Gvermi778.t1 ID=Gvermi778.t1|Name=Gvermi778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=484bp
MCPSPAADPSEQPLIAVKDYRPSTHGSSSSDGPDSTDEDCYQFEEQPSKP
CPFAQTPRVSKYGKTYRTRHAAGSWEEKPVITTIETPVQLRCWSINGPDE
TGDHEDNREIVYMDEHITVHMKDMELINLQWELDNLRPGPPARIGKLSPL
QKSHISRAHPLVLPRPKYHASAVGFGVPKSCFDAVADMLTAEGRLVEEPS
SLSDSSSDSADQFDFNCSSDTDSSPHFKFGLHSSTELHSMSKQSSDQLSE
QSSSDERLAAALLSNTLTENDRQHEATVDVTLQSDSSESRLAQSQALLQF
LALRVEKLVHVTASLQERVAVSFNERQQLQEQLLALKASCRSAGHPTSPR
NADANGFANADQQACSKPRSPRKKRKSTTREEDRLRKELMAEKQRTAQVQ
LENDRLLGVIFKLKKEMELEHDLMMRIEKKLAQDQACRRAQRHRSVAKPR
NLSRDPKKKVEQRRRWIFSRSKSSTSKKCEPHM*
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mRNA from alignment at ScGOVlb_2952:185421..186872+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi778.t1 ID=Gvermi778.t1|Name=Gvermi778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at ScGOVlb_2952:185421..186872+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCCCCAGCCCAGCCGCAGACCCCTCCGAACAGCCGCTCATCGCCGT
TAAGGACTACCGCCCGTCCACCCACGGCTCCAGCAGCAGCGATGGTCCGG
ACAGCACCGACGAAGATTGCTACCAGTTTGAAGAACAGCCCTCCAAACCG
TGCCCCTTCGCCCAGACCCCGCGCGTTTCCAAGTACGGAAAAACCTACCG
TACGCGCCATGCCGCCGGCTCCTGGGAAGAAAAGCCTGTCATCACCACCA
TCGAAACCCCCGTCCAGCTGCGATGCTGGTCTATCAATGGACCTGATGAG
ACCGGCGATCACGAAGACAACCGCGAGATTGTATACATGGATGAACACAT
CACTGTTCACATGAAAGACATGGAGCTCATCAACCTGCAGTGGGAGCTGG
ACAATCTCCGCCCCGGTCCGCCCGCCCGCATCGGCAAGCTCTCCCCGCTT
CAGAAAAGCCATATCTCTCGCGCCCATCCCCTCGTCCTCCCGCGCCCCAA
ATACCACGCTTCCGCCGTCGGTTTCGGCGTTCCCAAGTCTTGTTTCGACG
CCGTAGCCGACATGTTGACCGCGGAGGGCAGACTGGTAGAAGAACCCTCC
TCCTTGTCTGACTCTTCATCAGACAGCGCCGACCAATTCGACTTCAATTG
CTCGTCAGACACTGATTCCTCTCCACACTTCAAGTTTGGTTTACACTCCA
GCACAGAGCTCCACAGCATGTCGAAGCAGTCGTCAGACCAACTCTCCGAG
CAGAGCAGCTCCGATGAACGCCTCGCCGCAGCGCTACTTTCAAACACGCT
CACTGAGAATGACCGCCAACACGAAGCAACCGTCGATGTCACTCTGCAAT
CAGATTCTTCCGAGAGCCGACTTGCCCAATCACAAGCACTGCTGCAATTC
CTGGCGCTGCGGGTTGAAAAGTTGGTGCATGTCACCGCCTCTCTTCAAGA
AAGAGTGGCCGTCAGCTTCAACGAAAGGCAGCAGCTGCAGGAGCAGCTTC
TGGCCTTGAAGGCTTCGTGTCGCTCCGCGGGGCATCCAACTTCGCCCAGG
AACGCAGATGCCAACGGGTTCGCCAACGCTGACCAGCAAGCCTGCTCAAA
GCCGAGATCGCCGCGAAAGAAGCGGAAGAGCACAACCCGCGAGGAGGACA
GATTGAGGAAGGAGTTGATGGCTGAAAAACAACGAACCGCGCAAGTGCAG
CTGGAGAATGACAGGCTGCTGGGGGTCATTTTCAAGCTCAAGAAGGAGAT
GGAGCTTGAGCACGATCTGATGATGAGAATTGAGAAAAAGCTTGCGCAGG
ACCAAGCTTGTCGAAGAGCGCAACGACACAGATCCGTTGCCAAGCCACGC
AACTTGTCTAGGGATCCCAAGAAGAAGGTGGAGCAGCGACGGAGGTGGAT
TTTCAGTAGAAGCAAAAGCTCGACGTCAAAAAAATGTGAACCGCATATGT
AA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:185421..186872+

>Gvermi778.t1 ID=Gvermi778.t1|Name=Gvermi778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1452bp|location=Sequence derived from alignment at ScGOVlb_2952:185421..186872+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCCCCAGCCCAGCCGCAGACCCCTCCGAACAGCCGCTCATCGCCGT
TAAGGACTACCGCCCGTCCACCCACGGCTCCAGCAGCAGCGATGGTCCGG
ACAGCACCGACGAAGATTGCTACCAGTTTGAAGAACAGCCCTCCAAACCG
TGCCCCTTCGCCCAGACCCCGCGCGTTTCCAAGTACGGAAAAACCTACCG
TACGCGCCATGCCGCCGGCTCCTGGGAAGAAAAGCCTGTCATCACCACCA
TCGAAACCCCCGTCCAGCTGCGATGCTGGTCTATCAATGGACCTGATGAG
ACCGGCGATCACGAAGACAACCGCGAGATTGTATACATGGATGAACACAT
CACTGTTCACATGAAAGACATGGAGCTCATCAACCTGCAGTGGGAGCTGG
ACAATCTCCGCCCCGGTCCGCCCGCCCGCATCGGCAAGCTCTCCCCGCTT
CAGAAAAGCCATATCTCTCGCGCCCATCCCCTCGTCCTCCCGCGCCCCAA
ATACCACGCTTCCGCCGTCGGTTTCGGCGTTCCCAAGTCTTGTTTCGACG
CCGTAGCCGACATGTTGACCGCGGAGGGCAGACTGGTAGAAGAACCCTCC
TCCTTGTCTGACTCTTCATCAGACAGCGCCGACCAATTCGACTTCAATTG
CTCGTCAGACACTGATTCCTCTCCACACTTCAAGTTTGGTTTACACTCCA
GCACAGAGCTCCACAGCATGTCGAAGCAGTCGTCAGACCAACTCTCCGAG
CAGAGCAGCTCCGATGAACGCCTCGCCGCAGCGCTACTTTCAAACACGCT
CACTGAGAATGACCGCCAACACGAAGCAACCGTCGATGTCACTCTGCAAT
CAGATTCTTCCGAGAGCCGACTTGCCCAATCACAAGCACTGCTGCAATTC
CTGGCGCTGCGGGTTGAAAAGTTGGTGCATGTCACCGCCTCTCTTCAAGA
AAGAGTGGCCGTCAGCTTCAACGAAAGGCAGCAGCTGCAGGAGCAGCTTC
TGGCCTTGAAGGCTTCGTGTCGCTCCGCGGGGCATCCAACTTCGCCCAGG
AACGCAGATGCCAACGGGTTCGCCAACGCTGACCAGCAAGCCTGCTCAAA
GCCGAGATCGCCGCGAAAGAAGCGGAAGAGCACAACCCGCGAGGAGGACA
GATTGAGGAAGGAGTTGATGGCTGAAAAACAACGAACCGCGCAAGTGCAG
CTGGAGAATGACAGGCTGCTGGGGGTCATTTTCAAGCTCAAGAAGGAGAT
GGAGCTTGAGCACGATCTGATGATGAGAATTGAGAAAAAGCTTGCGCAGG
ACCAAGCTTGTCGAAGAGCGCAACGACACAGATCCGTTGCCAAGCCACGC
AACTTGTCTAGGGATCCCAAGAAGAAGGTGGAGCAGCGACGGAGGTGGAT
TTTCAGTAGAAGCAAAAGCTCGACGTCAAAAAAATGTGAACCGCATATGT
AA
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