Gvermi771.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi771.t1
Unique Name	Gvermi771.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	701

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2952	contig	ScGOVlb_2952:31965..34067 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi771	Gvermi771	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2952 31965..34067 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi771.t1.start1	Gvermi771.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2952 31965..31967 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi771.t1.CDS1	Gvermi771.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2952 31965..34067 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi771.t1.exon1	Gvermi771.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2952 31965..34067 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi771.t1.stop1	Gvermi771.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2952 34065..34067 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi771.t1	Gvermi771.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2952 31965..34067 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2952:31965..34067+
coding sequence from alignment at ScGOVlb_2952:31965..34067+

mRNA sequence

>Gvermi771.t1 ID=Gvermi771.t1|Name=Gvermi771.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=701bp
MAAATRTASWPPSNASSSHISVHNLVLTASADDANLPHEQPLDDPVITRA
SQFISRALAAHVPPSPDSSHTHRPSPHVPSLQHDDNDDDYDDDDYDDDDY
DTNDEDEHLRAVHLRKQHPDPQLPQSSTPNTQKPLLLNHQPHSKLNSTAS
QLSSDPLSQQRQLCQLGNTAPHYSEYTLEHHTTESNGHQHDQPTEPLETM
PTHHLARTLPTRKAASKNTGPMRSTSSQPPSREPQTSHASFVFSEAWYEQ
MCIESVPLRLCVPSDVMHPSFFRITCARHNSLFPPEPAANTVTTHTAEAN
LLYQVLAFLYENLNQLFDMFGDFLDLEGVEPSDPAMVRLRSNWKHLRGIT
EMLECRYDLLCGYRQRDFRQTALMEAHMTPALGHSALSQAVNDDMRGVPL
ETAQLNAETRDKLLYNEFSWKPSEPQRQSNDKEAGQSNGEEAGQSNGAIK
TKSLSPRKRKNRSVSWADRQAPSVEFVFVLRRYDLISASVIRGAWHVFGD
YLWRLVIYPRKEKGLEGYLWVYLQCGGTCDVGDDDDVDEKDHEEGASQEE
EEEEEEEEEEEEEEGETDANVDDDEEDEHEEEGGGGVLWCRPAQFVMRVV
HSTSPLARAAVRSGREMFDSIETVEESQWYDESDEASLYPDIKRQEYHVF
RSTADDWGFEIARFSSLQPGLYADNDMNVVFTVRIMLLSFEQPLPPRESA
*

spliced messenger RNA

>Gvermi771.t1 ID=Gvermi771.t1|Name=Gvermi771.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2103bp|location=Sequence derived from alignment at ScGOVlb_2952:31965..34067+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCGCAACGCGAACGGCTTCGTGGCCGCCATCCAACGCTTCTTC
GTCCCACATCTCCGTTCACAACCTTGTGCTGACTGCATCCGCTGATGATG
CCAACTTGCCGCATGAGCAGCCCCTTGACGACCCAGTAATCACTCGCGCC
TCGCAGTTTATATCCCGCGCGCTCGCTGCTCACGTCCCGCCCTCCCCCGA
CTCATCCCACACCCACCGCCCATCCCCTCACGTTCCTTCACTCCAACacg
acgacaacgacgacgactacgacgacgacgattacgacgacgacgactac
gacACCAACGACGAGGACGAGCATCTCCGTGCCGTTCACCTCCGCAAGCA
ACATCCCGACCCTCAGCTCCCGCAATCCTCCACTCCCAACACACAGAAAC
CCCTACTGCTCAATCACCAACCTCATTCTAAACTAAACTCAACCGCTTCA
CAGCTTTCATCTGATCCGTTATCTCAACAACGTCAACTTTGCCAACTTGG
AAACACCGCTCCACATTACAGCGAATATACTCTCGAACACCATACAACTG
AAAGCAACGGTCACCAACACGATCAACCCACCGAACCACTTGAAACAATG
CCTACCCATCACTTGGCCCGTACCCTTCCGACCCGCAAAGCCGCTTCTAA
GAATACAGGTCCCATGCGATCCACCTCCTCACAGCCGCCCTCGCGAGAAC
CACAGACATCTCACGCCTCTTTCGTCTTCTCTGAAGCATGGTATGAGCAA
ATGTGCATCGAGTCTGTGCCGCTCCGTCTCTGCGTCCCATCAGATGTCAT
GCATCCATCTTTCTTTCGTATCACGTGCGCCCGTCACAATTCTCTGTTTC
CACCCGAGCCCGCTGCGAATACTGTTACCACTCACACCGCAGAGGCCAAC
CTGTTGTACCAGGTGCTGGCCTTTCTGTACGAAAACCTCAACCAGCTTTT
TGATATGTTTGGCGACTTTCTAGACCTTGAAGGAGTGGAGCCCTCTGATC
CGGCCATGGTTCGGCTGCGCTCCAACTGGAAACACTTGCGTGGTATAACC
GAGATGCTCGAGTGTCGTTACGATCTACTTTGCGGGTACAGACAGCGTGA
TTTTCGACAAACTGCTCTCATGGAGGCGCACATGACTCCGGCATTGGGGC
ACAGCGCGCTCTCGCAGGCCGTGAATGACGACATGCGCGGTGTACCCCTC
GAGACGGCTCAGCTGAACGCTGAAACTCGCGACAAATTACTTTACAATGA
ATTCAGTTGGAAGCCCAGTGAACCGCAAAGGCAATCAAATGATAAAGAGG
CGGGTCAATCAAATGGTGAAGAGGCGGGTCAATCAAATGGCGCAATCAAA
ACCAAATCATTATCTCCGAGAAAGAGAAAAAATCGATCAGTCTCTTGGGC
TGATCGCCAGGCGCCGAGCGTTGAATTTGTTTTTGTGCTGAGGAGATACG
ATTTGATAAGCGCGTCCGTAATTCGCGGTGCATGGCACGTGTTTGGAGAC
TATTTGTGGAGACTCGTCATATACCCGCGAAAAGAAAAGGGGTTAGAAGG
TTATCTGTGGGTCTATCTACAATGTGGAGGAACGTGTGACGTTGGAGATG
ACGATGATGTGGATGAGAAAGACCATGAAGAGGGAGCGTCTCaagaggag
gaagaggaggaagaggaggaagaggaggaagaggaggaGGAAGGTGAGAC
GGACGCTAACGTGGACGACGACGAAGAAGATGAACACGAGGAAGAGGGTG
GGGGCGGGGTACTGTGGTGCAGGCCAGCTCAATTTGTGATGCGGGTCGTG
CACTCGACGTCCCCGCTCGCTCGAGCGGCTGTGCGCTCGGGTCGTGAGAT
GTTTGATAGCATTGAGACCGTGGAAGAATCACAATGGTACGACGAGTCCG
ATGAAGCATCATTATATCCGGACATCAAACGCCAGGAGTACCACGTGTTT
CGGAGCACTGCAGATGATTGGGGCTTCGAGATCGCTAGGTTCTCTTCGCT
GCAACCTGGATTATACGCAGACAACGACATGAATGTCGTGTTCACGGTTC
GAATAATGCTACTATCGTTCGAGCAACCTTTACCACCTCGCGAGAGTGCA
TGA

protein sequence of Gvermi771.t1

>Gvermi771.t1 ID=Gvermi771.t1|Name=Gvermi771.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=701bp
MAAATRTASWPPSNASSSHISVHNLVLTASADDANLPHEQPLDDPVITRA
SQFISRALAAHVPPSPDSSHTHRPSPHVPSLQHDDNDDDYDDDDYDDDDY
DTNDEDEHLRAVHLRKQHPDPQLPQSSTPNTQKPLLLNHQPHSKLNSTAS
QLSSDPLSQQRQLCQLGNTAPHYSEYTLEHHTTESNGHQHDQPTEPLETM
PTHHLARTLPTRKAASKNTGPMRSTSSQPPSREPQTSHASFVFSEAWYEQ
MCIESVPLRLCVPSDVMHPSFFRITCARHNSLFPPEPAANTVTTHTAEAN
LLYQVLAFLYENLNQLFDMFGDFLDLEGVEPSDPAMVRLRSNWKHLRGIT
EMLECRYDLLCGYRQRDFRQTALMEAHMTPALGHSALSQAVNDDMRGVPL
ETAQLNAETRDKLLYNEFSWKPSEPQRQSNDKEAGQSNGEEAGQSNGAIK
TKSLSPRKRKNRSVSWADRQAPSVEFVFVLRRYDLISASVIRGAWHVFGD
YLWRLVIYPRKEKGLEGYLWVYLQCGGTCDVGDDDDVDEKDHEEGASQEE
EEEEEEEEEEEEEEGETDANVDDDEEDEHEEEGGGGVLWCRPAQFVMRVV
HSTSPLARAAVRSGREMFDSIETVEESQWYDESDEASLYPDIKRQEYHVF
RSTADDWGFEIARFSSLQPGLYADNDMNVVFTVRIMLLSFEQPLPPRESA
*

mRNA from alignment at ScGOVlb_2952:31965..34067+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi771.t1 ID=Gvermi771.t1|Name=Gvermi771.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2103bp|location=Sequence derived from alignment at ScGOVlb_2952:31965..34067+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCCGCAACGCGAACGGCTTCGTGGCCGCCATCCAACGCTTCTTC
GTCCCACATCTCCGTTCACAACCTTGTGCTGACTGCATCCGCTGATGATG
CCAACTTGCCGCATGAGCAGCCCCTTGACGACCCAGTAATCACTCGCGCC
TCGCAGTTTATATCCCGCGCGCTCGCTGCTCACGTCCCGCCCTCCCCCGA
CTCATCCCACACCCACCGCCCATCCCCTCACGTTCCTTCACTCCAACacg
acgacaacgacgacgactacgacgacgacgattacgacgacgacgactac
gacACCAACGACGAGGACGAGCATCTCCGTGCCGTTCACCTCCGCAAGCA
ACATCCCGACCCTCAGCTCCCGCAATCCTCCACTCCCAACACACAGAAAC
CCCTACTGCTCAATCACCAACCTCATTCTAAACTAAACTCAACCGCTTCA
CAGCTTTCATCTGATCCGTTATCTCAACAACGTCAACTTTGCCAACTTGG
AAACACCGCTCCACATTACAGCGAATATACTCTCGAACACCATACAACTG
AAAGCAACGGTCACCAACACGATCAACCCACCGAACCACTTGAAACAATG
CCTACCCATCACTTGGCCCGTACCCTTCCGACCCGCAAAGCCGCTTCTAA
GAATACAGGTCCCATGCGATCCACCTCCTCACAGCCGCCCTCGCGAGAAC
CACAGACATCTCACGCCTCTTTCGTCTTCTCTGAAGCATGGTATGAGCAA
ATGTGCATCGAGTCTGTGCCGCTCCGTCTCTGCGTCCCATCAGATGTCAT
GCATCCATCTTTCTTTCGTATCACGTGCGCCCGTCACAATTCTCTGTTTC
CACCCGAGCCCGCTGCGAATACTGTTACCACTCACACCGCAGAGGCCAAC
CTGTTGTACCAGGTGCTGGCCTTTCTGTACGAAAACCTCAACCAGCTTTT
TGATATGTTTGGCGACTTTCTAGACCTTGAAGGAGTGGAGCCCTCTGATC
CGGCCATGGTTCGGCTGCGCTCCAACTGGAAACACTTGCGTGGTATAACC
GAGATGCTCGAGTGTCGTTACGATCTACTTTGCGGGTACAGACAGCGTGA
TTTTCGACAAACTGCTCTCATGGAGGCGCACATGACTCCGGCATTGGGGC
ACAGCGCGCTCTCGCAGGCCGTGAATGACGACATGCGCGGTGTACCCCTC
GAGACGGCTCAGCTGAACGCTGAAACTCGCGACAAATTACTTTACAATGA
ATTCAGTTGGAAGCCCAGTGAACCGCAAAGGCAATCAAATGATAAAGAGG
CGGGTCAATCAAATGGTGAAGAGGCGGGTCAATCAAATGGCGCAATCAAA
ACCAAATCATTATCTCCGAGAAAGAGAAAAAATCGATCAGTCTCTTGGGC
TGATCGCCAGGCGCCGAGCGTTGAATTTGTTTTTGTGCTGAGGAGATACG
ATTTGATAAGCGCGTCCGTAATTCGCGGTGCATGGCACGTGTTTGGAGAC
TATTTGTGGAGACTCGTCATATACCCGCGAAAAGAAAAGGGGTTAGAAGG
TTATCTGTGGGTCTATCTACAATGTGGAGGAACGTGTGACGTTGGAGATG
ACGATGATGTGGATGAGAAAGACCATGAAGAGGGAGCGTCTCaagaggag
gaagaggaggaagaggaggaagaggaggaagaggaggaGGAAGGTGAGAC
GGACGCTAACGTGGACGACGACGAAGAAGATGAACACGAGGAAGAGGGTG
GGGGCGGGGTACTGTGGTGCAGGCCAGCTCAATTTGTGATGCGGGTCGTG
CACTCGACGTCCCCGCTCGCTCGAGCGGCTGTGCGCTCGGGTCGTGAGAT
GTTTGATAGCATTGAGACCGTGGAAGAATCACAATGGTACGACGAGTCCG
ATGAAGCATCATTATATCCGGACATCAAACGCCAGGAGTACCACGTGTTT
CGGAGCACTGCAGATGATTGGGGCTTCGAGATCGCTAGGTTCTCTTCGCT
GCAACCTGGATTATACGCAGACAACGACATGAATGTCGTGTTCACGGTTC
GAATAATGCTACTATCGTTCGAGCAACCTTTACCACCTCGCGAGAGTGCA
TGA

Coding sequence (CDS) from alignment at ScGOVlb_2952:31965..34067+

>Gvermi771.t1 ID=Gvermi771.t1|Name=Gvermi771.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2103bp|location=Sequence derived from alignment at ScGOVlb_2952:31965..34067+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCCGCAACGCGAACGGCTTCGTGGCCGCCATCCAACGCTTCTTC
GTCCCACATCTCCGTTCACAACCTTGTGCTGACTGCATCCGCTGATGATG
CCAACTTGCCGCATGAGCAGCCCCTTGACGACCCAGTAATCACTCGCGCC
TCGCAGTTTATATCCCGCGCGCTCGCTGCTCACGTCCCGCCCTCCCCCGA
CTCATCCCACACCCACCGCCCATCCCCTCACGTTCCTTCACTCCAACacg
acgacaacgacgacgactacgacgacgacgattacgacgacgacgactac
gacACCAACGACGAGGACGAGCATCTCCGTGCCGTTCACCTCCGCAAGCA
ACATCCCGACCCTCAGCTCCCGCAATCCTCCACTCCCAACACACAGAAAC
CCCTACTGCTCAATCACCAACCTCATTCTAAACTAAACTCAACCGCTTCA
CAGCTTTCATCTGATCCGTTATCTCAACAACGTCAACTTTGCCAACTTGG
AAACACCGCTCCACATTACAGCGAATATACTCTCGAACACCATACAACTG
AAAGCAACGGTCACCAACACGATCAACCCACCGAACCACTTGAAACAATG
CCTACCCATCACTTGGCCCGTACCCTTCCGACCCGCAAAGCCGCTTCTAA
GAATACAGGTCCCATGCGATCCACCTCCTCACAGCCGCCCTCGCGAGAAC
CACAGACATCTCACGCCTCTTTCGTCTTCTCTGAAGCATGGTATGAGCAA
ATGTGCATCGAGTCTGTGCCGCTCCGTCTCTGCGTCCCATCAGATGTCAT
GCATCCATCTTTCTTTCGTATCACGTGCGCCCGTCACAATTCTCTGTTTC
CACCCGAGCCCGCTGCGAATACTGTTACCACTCACACCGCAGAGGCCAAC
CTGTTGTACCAGGTGCTGGCCTTTCTGTACGAAAACCTCAACCAGCTTTT
TGATATGTTTGGCGACTTTCTAGACCTTGAAGGAGTGGAGCCCTCTGATC
CGGCCATGGTTCGGCTGCGCTCCAACTGGAAACACTTGCGTGGTATAACC
GAGATGCTCGAGTGTCGTTACGATCTACTTTGCGGGTACAGACAGCGTGA
TTTTCGACAAACTGCTCTCATGGAGGCGCACATGACTCCGGCATTGGGGC
ACAGCGCGCTCTCGCAGGCCGTGAATGACGACATGCGCGGTGTACCCCTC
GAGACGGCTCAGCTGAACGCTGAAACTCGCGACAAATTACTTTACAATGA
ATTCAGTTGGAAGCCCAGTGAACCGCAAAGGCAATCAAATGATAAAGAGG
CGGGTCAATCAAATGGTGAAGAGGCGGGTCAATCAAATGGCGCAATCAAA
ACCAAATCATTATCTCCGAGAAAGAGAAAAAATCGATCAGTCTCTTGGGC
TGATCGCCAGGCGCCGAGCGTTGAATTTGTTTTTGTGCTGAGGAGATACG
ATTTGATAAGCGCGTCCGTAATTCGCGGTGCATGGCACGTGTTTGGAGAC
TATTTGTGGAGACTCGTCATATACCCGCGAAAAGAAAAGGGGTTAGAAGG
TTATCTGTGGGTCTATCTACAATGTGGAGGAACGTGTGACGTTGGAGATG
ACGATGATGTGGATGAGAAAGACCATGAAGAGGGAGCGTCTCaagaggag
gaagaggaggaagaggaggaagaggaggaagaggaggaGGAAGGTGAGAC
GGACGCTAACGTGGACGACGACGAAGAAGATGAACACGAGGAAGAGGGTG
GGGGCGGGGTACTGTGGTGCAGGCCAGCTCAATTTGTGATGCGGGTCGTG
CACTCGACGTCCCCGCTCGCTCGAGCGGCTGTGCGCTCGGGTCGTGAGAT
GTTTGATAGCATTGAGACCGTGGAAGAATCACAATGGTACGACGAGTCCG
ATGAAGCATCATTATATCCGGACATCAAACGCCAGGAGTACCACGTGTTT
CGGAGCACTGCAGATGATTGGGGCTTCGAGATCGCTAGGTTCTCTTCGCT
GCAACCTGGATTATACGCAGACAACGACATGAATGTCGTGTTCACGGTTC
GAATAATGCTACTATCGTTCGAGCAACCTTTACCACCTCGCGAGAGTGCA
TGA