Gvermi121.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi121.t1
Unique NameGvermi121.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length92
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2920contigScGOVlb_2920:754..1028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr38165
PFAMsLum_binding
Max annot lvl2836|Bacillariophyta
KEGG rclassRC00958,RC00960
KEGG koko:K00793
KEGG ReactionR00066
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG ModuleM00125
Evalue0.00058
EggNOG OGsCOG0307@1|root,KOG3310@2759|Eukaryota,2XBAA@2836|Bacillariophyta
EC2.5.1.9
DescriptionLumazine binding domain
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi121Gvermi121Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2920 754..1028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi121.t1.CDS1Gvermi121.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2920 754..1028 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi121.t1.exon1Gvermi121.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2920 754..1028 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi121.t1.stop1Gvermi121.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2920 1026..1028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi121.t1Gvermi121.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2920 754..1028 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi121.t1 ID=Gvermi121.t1|Name=Gvermi121.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=92bp
XMNSLNSKVIFKIEHINSGHFVESHVDGTGEIVERWTGEAWTEVAPIAVV
LAAVDIVGSEVLFVDDDFGPLAARMVVAAVAAVGPVRAVDH*
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spliced messenger RNA

>Gvermi121.t1 ID=Gvermi121.t1|Name=Gvermi121.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=275bp|location=Sequence derived from alignment at ScGOVlb_2920:754..1028+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
AAATGAATAGTCTAAATTCCAAGGTTATATTCAAGATTGAACACATCAAT
TCAGGTCACTTTGTTGAAAGCCACGTGGACGGTACCGGGGAGATTGTGGA
ACGATGGACTGGCGAGGCATGGACAGAGGTTGCGCCCATTGCTGTTGTTC
TTGCTGCTGTTGATATTGTTGGAAGTGAGGTGCTGTTTGTTGATGATGAT
TTTGGTCCACTGGCTGCTCGTATGGTTGTTGCTGCTGTTGCTGCTGTTGG
TCCAGTGAGGGCTGTTGACCATTAA
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protein sequence of Gvermi121.t1

>Gvermi121.t1 ID=Gvermi121.t1|Name=Gvermi121.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=92bp
XMNSLNSKVIFKIEHINSGHFVESHVDGTGEIVERWTGEAWTEVAPIAVV
LAAVDIVGSEVLFVDDDFGPLAARMVVAAVAAVGPVRAVDH*
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mRNA from alignment at ScGOVlb_2920:754..1028+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi121.t1 ID=Gvermi121.t1|Name=Gvermi121.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=275bp|location=Sequence derived from alignment at ScGOVlb_2920:754..1028+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
AAATGAATAGTCTAAATTCCAAGGTTATATTCAAGATTGAACACATCAAT
TCAGGTCACTTTGTTGAAAGCCACGTGGACGGTACCGGGGAGATTGTGGA
ACGATGGACTGGCGAGGCATGGACAGAGGTTGCGCCCATTGCTGTTGTTC
TTGCTGCTGTTGATATTGTTGGAAGTGAGGTGCTGTTTGTTGATGATGAT
TTTGGTCCACTGGCTGCTCGTATGGTTGTTGCTGCTGTTGCTGCTGTTGG
TCCAGTGAGGGCTGTTGACCATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2920:754..1028+

>Gvermi121.t1 ID=Gvermi121.t1|Name=Gvermi121.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=275bp|location=Sequence derived from alignment at ScGOVlb_2920:754..1028+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
AAATGAATAGTCTAAATTCCAAGGTTATATTCAAGATTGAACACATCAAT
TCAGGTCACTTTGTTGAAAGCCACGTGGACGGTACCGGGGAGATTGTGGA
ACGATGGACTGGCGAGGCATGGACAGAGGTTGCGCCCATTGCTGTTGTTC
TTGCTGCTGTTGATATTGTTGGAAGTGAGGTGCTGTTTGTTGATGATGAT
TTTGGTCCACTGGCTGCTCGTATGGTTGTTGCTGCTGTTGCTGCTGTTGG
TCCAGTGAGGGCTGTTGACCATTAA
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