Gvermi4454.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4454.t1
Unique NameGvermi4454.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length160
Homology
BLAST of Gvermi4454.t1 vs. uniprot
Match: A0A2V3J1U0_9FLOR (Phosphoglucan, water dikinase, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1U0_9FLOR)

HSP 1 Score: 90.1 bits (222), Expect = 2.010e-18
Identity = 54/156 (34.62%), Postives = 77/156 (49.36%), Query Frame = 0
Query:    4 EVANEAGFSKDVVQYAKPLYVLRRKERHARCDETDSPYTSPPYSPPPEPALD--GWVVQFGLNTNGMSQEVQNVLVRGCAKVVGSCQALGKWNVGHALRLEPVGGVLTADVLVKKDDHVEYKYVVEGKDGMVHWECGWNRSLPRVDDISIWLEEHW 157
            ++A+  GFS       +P++VL R +R     +  S   SP  S      L      V+F L  + +   V + L RG  +VVG  + LG W   +AL L   G V  A++L+    H EYKYV  G DG+V WE G NR LP+  D  + +E+ W
Sbjct:  201 DIASSTGFSSHQPDSKQPVFVLHRNQRGVHTADVLSTLVSPATSVSSASTLSDSACFVRFTLEKSSLPASVLHRLPRGSLRVVGEKRQLGVWQPSNALALIDAGDVFVAELLLSSA-HAEYKYVFVGDDGVVEWEAGDNRCLPKPSDRFLSVEDAW 355          
BLAST of Gvermi4454.t1 vs. uniprot
Match: A0A7R9Y315_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y315_9VIRI)

HSP 1 Score: 60.5 bits (145), Expect = 7.230e-9
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 0
Query:   80 CAKVVGSCQALGKWNVGHALRLE-PVGGVLTADVLVKKDDHVEYKYV-VEGKDGMVH-WECGWNRSL------PRVDDISIW 152
            C  VVGSC+ALG+W+VG A RL    G V  ADV++   + +EYKYV ++   G +H W+ G N  L      PR+    +W
Sbjct:    7 CFAVVGSCEALGEWDVGRAPRLMWSDGDVWEADVIIPAGETIEYKYVKIDDASGKIHDWQPGDNLELCPGVGLPRLQVCDVW 88          
BLAST of Gvermi4454.t1 vs. uniprot
Match: A0A653Q6D3_9MICO (Alpha-amylase n=1 Tax=Microbacterium sp. 8M TaxID=2653153 RepID=A0A653Q6D3_9MICO)

HSP 1 Score: 62.4 bits (150), Expect = 2.230e-8
Identity = 40/113 (35.40%), Postives = 56/113 (49.56%), Query Frame = 0
Query:   47 SPPPEPALDGWVVQFGLNTNGMSQEVQNVLVRGCAKVVGSCQALGKWNVGHALRLEPVG-GVLTADVLVKKDDHVEYKYVVEGKDGMVHWECGWNRSLPRVDDISIWLEEHWR 158
            +PPP P +    V F  N N  +    NV V      VGS  ALG WN G A++++P    V +A V +      +YKY+V+  +G V WE G NRS       S+ L + W+
Sbjct:  629 TPPPAPTV---AVTF--NENETTTWGSNVYV------VGSIPALGSWNTGAAIKMDPASYPVWSATVSIPASTAFQYKYIVKDANGAVTWESGANRSYTTGSSGSVTLNDTWK 730          
BLAST of Gvermi4454.t1 vs. uniprot
Match: A0A069JPV9_9ACTN (Alpha-amylase n=15 Tax=Streptomyces TaxID=1883 RepID=A0A069JPV9_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 2.140e-6
Identity = 41/117 (35.04%), Postives = 55/117 (47.01%), Query Frame = 0
Query:   47 SPPPEPALDGWVVQFGLN-TNGMSQEVQNVLVRGCAKVVGSCQALGKWNVGHALRLEPVG-GVLTADVLVKKDDHVEYKYVVEGKDGMVHWECGWNRS--LPRVDDISIWLEEHWRG 159
            +P PEP        FG+N T  M Q +          V G+  ALG WN G AL+L+P    V   DV +      EYKYV +   G V WE G NR+  +P    +++   + WRG
Sbjct:  470 TPDPEPGNGSSGASFGVNATTVMGQNIY---------VTGNQAALGNWNPGSALKLDPATYPVWKLDVALPAGTAFEYKYVRKDAAGNVTWESGANRTATVPASGKVTL-TADVWRG 576          
BLAST of Gvermi4454.t1 vs. uniprot
Match: A0A1C5CM95_9ACTN (Alpha-amylase n=3 Tax=Streptomyces TaxID=1883 RepID=A0A1C5CM95_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 3.940e-6
Identity = 38/111 (34.23%), Postives = 50/111 (45.05%), Query Frame = 0
Query:   50 PEPALDGWVVQFGLNTNGMSQEVQNVLVRGCAKVVGSCQALGKWNVGHALRLEPVG-GVLTADVLVKKDDHVEYKYVVEGKDGMVHWECGWNRSLPRVDDISIWLEEHWRG 159
            P P   G    FG+N    +Q  QN+ V       G+  ALG WN G AL+L+P    V   DV +      EYKY+ +   G V WE G NR+        + L + WR 
Sbjct:  469 PGPGASG--ASFGVNAT--TQLGQNIYV------TGNQAALGNWNTGSALKLDPAAYPVWKLDVALPAGTSFEYKYLRKDAAGAVTWESGANRTATVPASGKVTLNDTWRN 569          
BLAST of Gvermi4454.t1 vs. uniprot
Match: A0A345HLB5_9ACTN (Alpha-amylase n=1 Tax=Streptomyces paludis TaxID=2282738 RepID=A0A345HLB5_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 3.940e-6
Identity = 37/100 (37.00%), Postives = 46/100 (46.00%), Query Frame = 0
Query:   62 GLNTNGMSQEVQNVLVRGC-AKVVGSCQALGKWNVGHALRLEPVG-GVLTADVLVKKDDHVEYKYVVEGKDGMVHWECGWNRSLPRVDDISIWLEEHWRG 159
            G  T+G S  V    V G    V G   ALG WN G AL+L+P    V   DV +      +YKYV +   G V WE G NR+        + L + WRG
Sbjct:  470 GTGTSGASFGVTATTVPGQNIYVTGDHAALGGWNTGGALKLDPAAYPVWKLDVALPAGTSFQYKYVRKDAAGNVTWESGANRTATVPATGKVTLSDTWRG 569          
The following BLAST results are available for this feature:
BLAST of Gvermi4454.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3J1U0_9FLOR2.010e-1834.62Phosphoglucan, water dikinase, chloroplastic n=1 T... [more]
A0A7R9Y315_9VIRI7.230e-941.46Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A653Q6D3_9MICO2.230e-835.40Alpha-amylase n=1 Tax=Microbacterium sp. 8M TaxID=... [more]
A0A069JPV9_9ACTN2.140e-635.04Alpha-amylase n=15 Tax=Streptomyces TaxID=1883 Rep... [more]
A0A1C5CM95_9ACTN3.940e-634.23Alpha-amylase n=3 Tax=Streptomyces TaxID=1883 RepI... [more]
A0A345HLB5_9ACTN3.940e-637.00Alpha-amylase n=1 Tax=Streptomyces paludis TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002044Carbohydrate binding module family 20SMARTSM01065CBM_20_2coord: 56..148
e-value: 0.0017
score: 27.4
IPR002044Carbohydrate binding module family 20PFAMPF00686CBM_20coord: 82..144
e-value: 2.3E-11
score: 43.4
IPR002044Carbohydrate binding module family 20PROSITEPS51166CBM20coord: 51..159
score: 13.541622
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10Immunoglobulinscoord: 58..158
e-value: 6.8E-15
score: 56.7
IPR013784Carbohydrate-binding-like foldSUPERFAMILY49452Starch-binding domain-likecoord: 77..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:2025488..2025967 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4454.t1Gvermi4454.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 2025488..2025967 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4454.t1 ID=Gvermi4454.t1|Name=Gvermi4454.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=160bp
MVSEVANEAGFSKDVVQYAKPLYVLRRKERHARCDETDSPYTSPPYSPPP
EPALDGWVVQFGLNTNGMSQEVQNVLVRGCAKVVGSCQALGKWNVGHALR
LEPVGGVLTADVLVKKDDHVEYKYVVEGKDGMVHWECGWNRSLPRVDDIS
IWLEEHWRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002044CBM_fam20
IPR013783Ig-like_fold
IPR013784Carb-bd-like_fold