Gvermi7093.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7093.t1
Unique NameGvermi7093.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1631350..1631992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T003310
PFAMsDUF1640
Max annot lvl121069|Pythiales
Evalue0.000149
EggNOG OGs29YXM@1|root,2RXUY@2759|Eukaryota,1MGQK@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7093Gvermi7093Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1631350..1631992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7093.t1Gvermi7093.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1631350..1631992 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7093.t1.start1Gvermi7093.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1631350..1631352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7093.t1.CDS1Gvermi7093.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1631350..1631484 +
Gvermi7093.t1.CDS2Gvermi7093.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1631552..1631992 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7093.t1.exon1Gvermi7093.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1631350..1631484 +
Gvermi7093.t1.exon2Gvermi7093.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1631552..1631992 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7093.t1.intron1Gvermi7093.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 1631485..1631551 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7093.t1.stop1Gvermi7093.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1631990..1631992 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7093.t1 ID=Gvermi7093.t1|Name=Gvermi7093.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=192bp
LHSGLDALPDAHVPPTSVRVPLSHADHAQQPVFADTPLIFDTHRMIAFLR
QAGFSQTQSEGITDAMVRVSQHANKHHQTQMVTKNEFVSLRSELSILEKA
DFALLKTDINAIEKRMETSVAEIYTAVERVENRVIKWVIAVAGAIGLAII
RLTTTSPAAGSKGVVPPPASNVSDTDLPRVVRRDGLRVLIT*
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spliced messenger RNA

>Gvermi7093.t1 ID=Gvermi7093.t1|Name=Gvermi7093.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=576bp|location=Sequence derived from alignment at ScGOVlb_24229:1631350..1631992+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCACTCCGGCCTCGACGCGCTGCCCGATGCGCACGTACCGCCCACCTC
CGTGCGCGTGCCCCTCTCTCACGCCGACCACGCCCAGCAACCCGTCTTCG
CCGACACCCCGCTCATCTTCGACACGCACCGAATGATAGCCTTCTTGAGG
CAGGCAGGCTTCTCACAGACGCAGAGCGAGGGAATCACTGACGCCATGGT
GCGCGTCTCGCAGCACGCAAACAAGCACCACCAGACCCAAATGGTCACCA
AGAACGAGTTTGTCAGCCTTCGCTCCGAACTCAGCATCTTGGAAAAGGCC
GACTTTGCCCTGCTCAAGACCGACATCAACGCCATCGAAAAGCGCATGGA
AACCTCCGTTGCCGAAATTTACACTGCCGTGGAAAGAGTGGAGAACAGAG
TCATAAAGTGGGTCATTGCCGTCGCGGGCGCCATCGGCCTTGCCATCATC
CGCCTCACCACCACATCCCCGGCTGCCGGCTCCAAGGGCGTCGTGCCCCC
GCCCGCCTCCAACGTGAGCGACACTGACCTTCCGCGCGTCGTGCGTCGCG
ACGGACTGCGCGTTTTGATTACTTGA
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protein sequence of Gvermi7093.t1

>Gvermi7093.t1 ID=Gvermi7093.t1|Name=Gvermi7093.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=192bp
LHSGLDALPDAHVPPTSVRVPLSHADHAQQPVFADTPLIFDTHRMIAFLR
QAGFSQTQSEGITDAMVRVSQHANKHHQTQMVTKNEFVSLRSELSILEKA
DFALLKTDINAIEKRMETSVAEIYTAVERVENRVIKWVIAVAGAIGLAII
RLTTTSPAAGSKGVVPPPASNVSDTDLPRVVRRDGLRVLIT*
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mRNA from alignment at ScGOVlb_24229:1631350..1631992+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7093.t1 ID=Gvermi7093.t1|Name=Gvermi7093.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=643bp|location=Sequence derived from alignment at ScGOVlb_24229:1631350..1631992+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCACTCCGGCCTCGACGCGCTGCCCGATGCGCACGTACCGCCCACCTC
CGTGCGCGTGCCCCTCTCTCACGCCGACCACGCCCAGCAACCCGTCTTCG
CCGACACCCCGCTCATCTTCGACACGCACCGAATGGTACGCTCTCGCTTC
CCGCTTGCGTTGCTGACCGCGCGCTGACCCGCCTGTGTTGCCCACTCGTC
AGATAGCCTTCTTGAGGCAGGCAGGCTTCTCACAGACGCAGAGCGAGGGA
ATCACTGACGCCATGGTGCGCGTCTCGCAGCACGCAAACAAGCACCACCA
GACCCAAATGGTCACCAAGAACGAGTTTGTCAGCCTTCGCTCCGAACTCA
GCATCTTGGAAAAGGCCGACTTTGCCCTGCTCAAGACCGACATCAACGCC
ATCGAAAAGCGCATGGAAACCTCCGTTGCCGAAATTTACACTGCCGTGGA
AAGAGTGGAGAACAGAGTCATAAAGTGGGTCATTGCCGTCGCGGGCGCCA
TCGGCCTTGCCATCATCCGCCTCACCACCACATCCCCGGCTGCCGGCTCC
AAGGGCGTCGTGCCCCCGCCCGCCTCCAACGTGAGCGACACTGACCTTCC
GCGCGTCGTGCGTCGCGACGGACTGCGCGTTTTGATTACTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1631350..1631992+

>Gvermi7093.t1 ID=Gvermi7093.t1|Name=Gvermi7093.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=576bp|location=Sequence derived from alignment at ScGOVlb_24229:1631350..1631992+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCACTCCGGCCTCGACGCGCTGCCCGATGCGCACGTACCGCCCACCTC
CGTGCGCGTGCCCCTCTCTCACGCCGACCACGCCCAGCAACCCGTCTTCG
CCGACACCCCGCTCATCTTCGACACGCACCGAATGATAGCCTTCTTGAGG
CAGGCAGGCTTCTCACAGACGCAGAGCGAGGGAATCACTGACGCCATGGT
GCGCGTCTCGCAGCACGCAAACAAGCACCACCAGACCCAAATGGTCACCA
AGAACGAGTTTGTCAGCCTTCGCTCCGAACTCAGCATCTTGGAAAAGGCC
GACTTTGCCCTGCTCAAGACCGACATCAACGCCATCGAAAAGCGCATGGA
AACCTCCGTTGCCGAAATTTACACTGCCGTGGAAAGAGTGGAGAACAGAG
TCATAAAGTGGGTCATTGCCGTCGCGGGCGCCATCGGCCTTGCCATCATC
CGCCTCACCACCACATCCCCGGCTGCCGGCTCCAAGGGCGTCGTGCCCCC
GCCCGCCTCCAACGTGAGCGACACTGACCTTCCGCGCGTCGTGCGTCGCG
ACGGACTGCGCGTTTTGATTACTTGA
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