Gvermi6931.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6931.t1
Unique NameGvermi6931.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:606247..606882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog164328.Phyra81164
PFAMsHD_3
Max annot lvl4776|Peronosporales
KEGG koko:K07023
Evalue5.2e-53
EggNOG OGsCOG1896@1|root,KOG3197@2759|Eukaryota,3QBPM@4776|Peronosporales
DescriptionHD domain
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6931Gvermi6931Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 606247..606882 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6931.t1.stop1Gvermi6931.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 606247..606249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6931.t1.CDS1Gvermi6931.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 606247..606882 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6931.t1.exon1Gvermi6931.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 606247..606882 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6931.t1.start1Gvermi6931.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 606880..606882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6931.t1Gvermi6931.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 606247..606882 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6931.t1 ID=Gvermi6931.t1|Name=Gvermi6931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=212bp
MSVSPHSPSPAHTQPMSSADGTTSTLDFLRLIGRLKTTKRTGWVRSNVHL
PESIADHMYRMALIAFTIPHPNRDRLIRMALVHDLAECIVGDITPQDNVS
KQQKHQMEDDAMRHIRDHVLRRSPPALEMYQLWREYEDGASHDAMLVKDI
DKFEMVLQADEYERAQNVHLQQFFDSTRHLFRTDVVAALDKQLRHDRRNH
AAPHRQPPPDQ*
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spliced messenger RNA

>Gvermi6931.t1 ID=Gvermi6931.t1|Name=Gvermi6931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=636bp|location=Sequence derived from alignment at ScGOVlb_24229:606247..606882- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTCAGCCCGCACTCCCCGTCCCCAGCCCACACACAGCCGATGAG
CTCCGCGGACGGCACCACCAGCACGCTCGACTTCCTGCGCCTCATCGGCC
GCCTCAAGACCACCAAGCGCACCGGCTGGGTGCGCTCCAACGTGCACCTC
CCAGAGTCCATCGCCGACCACATGTACCGCATGGCCCTCATCGCCTTCAC
CATCCCCCACCCCAACCGCGACCGCCTCATCCGCATGGCGCTCGTGCACG
ATCTGGCCGAGTGCATCGTCGGCGACATCACCCCGCAAGACAACGTCTCC
AAGCAGCAAAAGCACCAGATGGAAGACGACGCCATGCGTCACATCCGCGA
CCACGTGCTGCGCCGCTCCCCGCCCGCCCTCGAGATGTACCAGCTGTGGA
GGGAGTACGAGGACGGCGCCTCGCACGACGCCATGCTCGTCAAGGACATT
GACAAGTTCGAGATGGTGCTGCAGGCCGACGAATACGAGCGCGCCCAGAA
CGTCCACCTGCAGCAGTTTTTCGATTCTACGCGCCACCTCTTCCGCACCG
ACGTCGTCGCCGCGCTGGACAAGCAGCTGCGCCACGATCGACGCAACCAC
GCCGCCCCGCACCGCCAACCGCCGCCCGACCAGTAA
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protein sequence of Gvermi6931.t1

>Gvermi6931.t1 ID=Gvermi6931.t1|Name=Gvermi6931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=212bp
MSVSPHSPSPAHTQPMSSADGTTSTLDFLRLIGRLKTTKRTGWVRSNVHL
PESIADHMYRMALIAFTIPHPNRDRLIRMALVHDLAECIVGDITPQDNVS
KQQKHQMEDDAMRHIRDHVLRRSPPALEMYQLWREYEDGASHDAMLVKDI
DKFEMVLQADEYERAQNVHLQQFFDSTRHLFRTDVVAALDKQLRHDRRNH
AAPHRQPPPDQ*
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mRNA from alignment at ScGOVlb_24229:606247..606882-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6931.t1 ID=Gvermi6931.t1|Name=Gvermi6931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=636bp|location=Sequence derived from alignment at ScGOVlb_24229:606247..606882- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGTCAGCCCGCACTCCCCGTCCCCAGCCCACACACAGCCGATGAG
CTCCGCGGACGGCACCACCAGCACGCTCGACTTCCTGCGCCTCATCGGCC
GCCTCAAGACCACCAAGCGCACCGGCTGGGTGCGCTCCAACGTGCACCTC
CCAGAGTCCATCGCCGACCACATGTACCGCATGGCCCTCATCGCCTTCAC
CATCCCCCACCCCAACCGCGACCGCCTCATCCGCATGGCGCTCGTGCACG
ATCTGGCCGAGTGCATCGTCGGCGACATCACCCCGCAAGACAACGTCTCC
AAGCAGCAAAAGCACCAGATGGAAGACGACGCCATGCGTCACATCCGCGA
CCACGTGCTGCGCCGCTCCCCGCCCGCCCTCGAGATGTACCAGCTGTGGA
GGGAGTACGAGGACGGCGCCTCGCACGACGCCATGCTCGTCAAGGACATT
GACAAGTTCGAGATGGTGCTGCAGGCCGACGAATACGAGCGCGCCCAGAA
CGTCCACCTGCAGCAGTTTTTCGATTCTACGCGCCACCTCTTCCGCACCG
ACGTCGTCGCCGCGCTGGACAAGCAGCTGCGCCACGATCGACGCAACCAC
GCCGCCCCGCACCGCCAACCGCCGCCCGACCAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:606247..606882-

>Gvermi6931.t1 ID=Gvermi6931.t1|Name=Gvermi6931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=636bp|location=Sequence derived from alignment at ScGOVlb_24229:606247..606882- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGTCAGCCCGCACTCCCCGTCCCCAGCCCACACACAGCCGATGAG
CTCCGCGGACGGCACCACCAGCACGCTCGACTTCCTGCGCCTCATCGGCC
GCCTCAAGACCACCAAGCGCACCGGCTGGGTGCGCTCCAACGTGCACCTC
CCAGAGTCCATCGCCGACCACATGTACCGCATGGCCCTCATCGCCTTCAC
CATCCCCCACCCCAACCGCGACCGCCTCATCCGCATGGCGCTCGTGCACG
ATCTGGCCGAGTGCATCGTCGGCGACATCACCCCGCAAGACAACGTCTCC
AAGCAGCAAAAGCACCAGATGGAAGACGACGCCATGCGTCACATCCGCGA
CCACGTGCTGCGCCGCTCCCCGCCCGCCCTCGAGATGTACCAGCTGTGGA
GGGAGTACGAGGACGGCGCCTCGCACGACGCCATGCTCGTCAAGGACATT
GACAAGTTCGAGATGGTGCTGCAGGCCGACGAATACGAGCGCGCCCAGAA
CGTCCACCTGCAGCAGTTTTTCGATTCTACGCGCCACCTCTTCCGCACCG
ACGTCGTCGCCGCGCTGGACAAGCAGCTGCGCCACGATCGACGCAACCAC
GCCGCCCCGCACCGCCAACCGCCGCCCGACCAGTAA
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