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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 4081.Solyc02g021470.2.1 |
| PFAMs | Cullin,Cullin_Nedd8 |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K10609 |
| KEGG Pathway | ko03420,ko04120,map03420,map04120 |
| KEGG Module | M00385,M00386 |
| GOs | GO:0000003,GO:0000151,GO:0000209,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009648,GO:0009719,GO:0009725,GO:0009743,GO:0009755,GO:0009756,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0009987,GO:0010033,GO:0010099,GO:0010100,GO:0010154,GO:0010182,GO:0010228,GO:0016567,GO:0019538,GO:0019899,GO:0022414,GO:0023052,GO:0031461,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048316,GO:0048366,GO:0048367,GO:0048519,GO:0048572,GO:0048573,GO:0048575,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048825,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0051716,GO:0061458,GO:0065007,GO:0070647,GO:0070887,GO:0071310,GO:0071322,GO:0071495,GO:0071704,GO:0080008,GO:0090304,GO:0090567,GO:0099402,GO:1901360,GO:1901564,GO:1901700,GO:1901701,GO:1902494,GO:1990234,GO:2000026,GO:2000030 |
| Evalue | 5.34e-243 |
| EggNOG OGs | COG5647@1|root,KOG2167@2759|Eukaryota,37ICM@33090|Viridiplantae,3GA8A@35493|Streptophyta,44ERT@71274|asterids |
| Description | Belongs to the cullin family |
| COG category | D |
| BRITE | ko00000,ko00001,ko00002,ko03400,ko04121,ko04147 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi6918.t1 ID=Gvermi6918.t1|Name=Gvermi6918.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=731bp MRIRSYDRKPAVPPELFRHAWSVHLQPAVDAVHQSRPVTASLQELYGHVH DVVLHRHAPVLYAALRDACDRHIASSIAKLAAVRAGERAFLDAVLAEWDA FCAHMLRIREIFRYLDRTYIVHAAHPEARSFWDMGLLLFRNHFSTAPNLQ NHTVHCLLSLINSERDGDAVDVSLIRNLLQMFTAIGTYDKAFEKPFLAAT DTYYRNEAHNLIASRDVPAYLKHAEHRIYDESQRSLRTLDPRTRNPLIST VEMRLVSDHVHTLLENGFSSMCDDHRKDDLKRCYVVLSRASDHMPPDSDS PNELMKSRLIDYVKKVGRAIVMDKSKDPEMVQSLLNLKSRLDDLVNYSFD GTEAFNIAINFAFESFVNARENKPAELIAKFVDGILRTGNKGFSEEQLES TLDKALTLFRFIDGKDVFEAFYNKDLAKRLLYDKSASLDLEKSMISKLKQ ECGPQFTSKLEAMFRDVDASKDLMQSFRTHKISKTKLPSGFDLNVFVLEA ARWPLSTQPSKVKLPQLLMDCQEVFKFFYLTKHNGRKLAWQHLDGSCTVK AHFPEGTKILQLSLYQTIVMVLFNDTDEMSYPDIAEATGIDEQPLKRTLL SLACGKVRVLQKRPKGPRIASTDSFVFNKKFSHRLTKLKINAIQMKETVE ENAATTEKVFQERNYQIDAAVVRIMKTRRTLQHTALLSEIYSQLRFPHKP GDVKKRIESLIEREYLERDENNPQTYHYLA* back to topspliced messenger RNA >Gvermi6918.t1 ID=Gvermi6918.t1|Name=Gvermi6918.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2193bp|location=Sequence derived from alignment at ScGOVlb_24229:462426..464618+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCGCATCCGCAGCTACGACCGCAAGCCCGCCGTGCCGCCCGAGCTCTT CCGCCACGCTTGGTCCGTGCATCTGCAGCCCGCCGTCGACGCCGTCCACC AGAGCCGCCCCGTCACCGCCTCCCTGCAGGAGCTGTACGGCCACGTGCAT GACGTCGTCCTGCATCGCCATGCGCCTGTGCTCTACGCCGCCTTGCGCGA CGCCTGTGACCGCCACATCGCCTCCAGCATTGCCAAGCTGGCTGCCGTGC GCGCGGGCGAGCGCGCCTTTCTCGACGCCGTTTTGGCCGAGTGGGATGCC TTCTGCGCTCACATGCTGCGCATTCGAGAGATCTTTCGCTACCTGGACAG AACCTATATTGTTCACGCCGCTCACCCCGAGGCGCGTTCTTTCTGGGACA TGGGTCTCCTCTTATTTCGCAATCATTTCTCAACCGCACCCAATCTGCAG AATCACACCGTCCACTGCCTTCTCTCGCTCATTAACAGTGAGCGCGACGG CGATGCCGTCGACGTCTCTCTCATTCGAAATCTTCTACAGATGTTCACCG CCATAGGCACATATGACAAGGCCTTTGAGAAACCCTTTTTGGCCGCCACA GACACGTACTATCGCAACGAGGCGCACAATCTCATTGCCTCACGAGACGT ACCGGCATATCTCAAACACGCCGAACATCGTATCTACGACGAATCTCAAC GCTCTCTACGAACTCTTGATCCGCGAACTCGCAATCCACTCATCTCAACC GTCGAAATGCGTCTGGTCTCTGACCATGTTCACACTCTACTCGAGAACGG CTTCAGTTCAATGTGCGACGACCACCGCAAAGATGACCTAAAGCGTTGCT ACGTCGTCCTTTCACGCGCCAGCGACCATATGCCTCCAGACTCTGACTCC CCGAACGAGCTCATGAAATCCCGACTCATTGACTACGTAAAGAAAGTTGG TCGCGCCATCGTCATGGACAAATCAAAGGACCCAGAGATGGTTCAGTCCC TGCTCAATTTGAAGTCCAGGCTTGATGACCTCGTCAATTACTCATTTGAT GGCACGGAGGCGTTCAACATTGCCATCAATTTTGCCTTCGAATCCTTTGT AAACGCCCGGGAGAACAAGCCTGCAGAACTCATAGCCAAGTTTGTCGATG GCATTCTGCGGACAGGTAACAAAGGCTTTTCCGAGGAGCAACTAGAGTCT ACGTTGGACAAGGCCCTTACGCTTTTCCGCTTTATTGATGGAAAAGACGT GTTTGAGGCCTTCTACAACAAGGATCTTGCTAAGCGTTTGCTTTACGACA AATCTGCAAGCTTGGATCTTGAAAAGAGTATGATTTCTAAACTAAAACAA GAATGTGGGCCTCAGTTCACATCCAAGCTGGAAGCCATGTTCCGAGATGT CGATGCTAGCAAGGACCTCATGCAGAGCTTTAGAACACACAAGATATCCA AAACTAAGCTACCCTCCGGCTTTGATCTCAACGTCTTCGTCTTGGAAGCT GCCAGATGGCCTCTTAGCACACAGCCCTCAAAAGTCAAGCTGCCTCAATT GCTAATGGATTGCCAAGAGGTCTTCAAGTTTTTTTACCTCACTAAACACA ATGGTCGTAAACTTGCTTGGCAACATTTAGATGGATCATGCACTGTGAAG GCTCATTTTCCAGAGGGGACCAAAATCTTGCAACTCTCATTGTATCAGAC TATTGTTATGGTTCTTTTCAATGACACTGACGAGATGTCATATCCTGACA TCGCTGAGGCAACAGGTATTGACGAGCAACCCCTGAAACGAACTCTACTA TCGTTGGCATGCGGAAAAGTTAGAGTTTTGCAAAAGAGGCCTAAAGGTCC TCGGATTGCATCTACTGATTCTTTTGTGTTTAACAAGAAGTTTTCTCATC GCCTAACAAAGCTCAAAATCAATGCGATCCAAATGAAAGAAACTGTCGAA GAGAATGCCGCTACGACTGAAAAGGTGTTCCAGGAAAGAAATTATCAGAT CGACGCCGCTGTCGTGCGGATTATGAAGACAAGGCGAACATTGCAACATA CTGCATTGCTGTCTGAAATATACAGTCAGTTGCGGTTCCCGCATAAGCCT GGAGATGTCAAGAAACGAATAGAGTCACTTATTGAACGCGAATATTTGGA AAGGGATGAAAACAACCCGCAGACTTATCATTATTTGGCATAA back to topprotein sequence of Gvermi6918.t1 >Gvermi6918.t1 ID=Gvermi6918.t1|Name=Gvermi6918.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=731bp
MRIRSYDRKPAVPPELFRHAWSVHLQPAVDAVHQSRPVTASLQELYGHVH DVVLHRHAPVLYAALRDACDRHIASSIAKLAAVRAGERAFLDAVLAEWDA FCAHMLRIREIFRYLDRTYIVHAAHPEARSFWDMGLLLFRNHFSTAPNLQ NHTVHCLLSLINSERDGDAVDVSLIRNLLQMFTAIGTYDKAFEKPFLAAT DTYYRNEAHNLIASRDVPAYLKHAEHRIYDESQRSLRTLDPRTRNPLIST VEMRLVSDHVHTLLENGFSSMCDDHRKDDLKRCYVVLSRASDHMPPDSDS PNELMKSRLIDYVKKVGRAIVMDKSKDPEMVQSLLNLKSRLDDLVNYSFD GTEAFNIAINFAFESFVNARENKPAELIAKFVDGILRTGNKGFSEEQLES TLDKALTLFRFIDGKDVFEAFYNKDLAKRLLYDKSASLDLEKSMISKLKQ ECGPQFTSKLEAMFRDVDASKDLMQSFRTHKISKTKLPSGFDLNVFVLEA ARWPLSTQPSKVKLPQLLMDCQEVFKFFYLTKHNGRKLAWQHLDGSCTVK AHFPEGTKILQLSLYQTIVMVLFNDTDEMSYPDIAEATGIDEQPLKRTLL SLACGKVRVLQKRPKGPRIASTDSFVFNKKFSHRLTKLKINAIQMKETVE ENAATTEKVFQERNYQIDAAVVRIMKTRRTLQHTALLSEIYSQLRFPHKP GDVKKRIESLIEREYLERDENNPQTYHYLA* back to topmRNA from alignment at ScGOVlb_24229:462426..464618+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi6918.t1 ID=Gvermi6918.t1|Name=Gvermi6918.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2193bp|location=Sequence derived from alignment at ScGOVlb_24229:462426..464618+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCGCATCCGCAGCTACGACCGCAAGCCCGCCGTGCCGCCCGAGCTCTT
CCGCCACGCTTGGTCCGTGCATCTGCAGCCCGCCGTCGACGCCGTCCACC
AGAGCCGCCCCGTCACCGCCTCCCTGCAGGAGCTGTACGGCCACGTGCAT
GACGTCGTCCTGCATCGCCATGCGCCTGTGCTCTACGCCGCCTTGCGCGA
CGCCTGTGACCGCCACATCGCCTCCAGCATTGCCAAGCTGGCTGCCGTGC
GCGCGGGCGAGCGCGCCTTTCTCGACGCCGTTTTGGCCGAGTGGGATGCC
TTCTGCGCTCACATGCTGCGCATTCGAGAGATCTTTCGCTACCTGGACAG
AACCTATATTGTTCACGCCGCTCACCCCGAGGCGCGTTCTTTCTGGGACA
TGGGTCTCCTCTTATTTCGCAATCATTTCTCAACCGCACCCAATCTGCAG
AATCACACCGTCCACTGCCTTCTCTCGCTCATTAACAGTGAGCGCGACGG
CGATGCCGTCGACGTCTCTCTCATTCGAAATCTTCTACAGATGTTCACCG
CCATAGGCACATATGACAAGGCCTTTGAGAAACCCTTTTTGGCCGCCACA
GACACGTACTATCGCAACGAGGCGCACAATCTCATTGCCTCACGAGACGT
ACCGGCATATCTCAAACACGCCGAACATCGTATCTACGACGAATCTCAAC
GCTCTCTACGAACTCTTGATCCGCGAACTCGCAATCCACTCATCTCAACC
GTCGAAATGCGTCTGGTCTCTGACCATGTTCACACTCTACTCGAGAACGG
CTTCAGTTCAATGTGCGACGACCACCGCAAAGATGACCTAAAGCGTTGCT
ACGTCGTCCTTTCACGCGCCAGCGACCATATGCCTCCAGACTCTGACTCC
CCGAACGAGCTCATGAAATCCCGACTCATTGACTACGTAAAGAAAGTTGG
TCGCGCCATCGTCATGGACAAATCAAAGGACCCAGAGATGGTTCAGTCCC
TGCTCAATTTGAAGTCCAGGCTTGATGACCTCGTCAATTACTCATTTGAT
GGCACGGAGGCGTTCAACATTGCCATCAATTTTGCCTTCGAATCCTTTGT
AAACGCCCGGGAGAACAAGCCTGCAGAACTCATAGCCAAGTTTGTCGATG
GCATTCTGCGGACAGGTAACAAAGGCTTTTCCGAGGAGCAACTAGAGTCT
ACGTTGGACAAGGCCCTTACGCTTTTCCGCTTTATTGATGGAAAAGACGT
GTTTGAGGCCTTCTACAACAAGGATCTTGCTAAGCGTTTGCTTTACGACA
AATCTGCAAGCTTGGATCTTGAAAAGAGTATGATTTCTAAACTAAAACAA
GAATGTGGGCCTCAGTTCACATCCAAGCTGGAAGCCATGTTCCGAGATGT
CGATGCTAGCAAGGACCTCATGCAGAGCTTTAGAACACACAAGATATCCA
AAACTAAGCTACCCTCCGGCTTTGATCTCAACGTCTTCGTCTTGGAAGCT
GCCAGATGGCCTCTTAGCACACAGCCCTCAAAAGTCAAGCTGCCTCAATT
GCTAATGGATTGCCAAGAGGTCTTCAAGTTTTTTTACCTCACTAAACACA
ATGGTCGTAAACTTGCTTGGCAACATTTAGATGGATCATGCACTGTGAAG
GCTCATTTTCCAGAGGGGACCAAAATCTTGCAACTCTCATTGTATCAGAC
TATTGTTATGGTTCTTTTCAATGACACTGACGAGATGTCATATCCTGACA
TCGCTGAGGCAACAGGTATTGACGAGCAACCCCTGAAACGAACTCTACTA
TCGTTGGCATGCGGAAAAGTTAGAGTTTTGCAAAAGAGGCCTAAAGGTCC
TCGGATTGCATCTACTGATTCTTTTGTGTTTAACAAGAAGTTTTCTCATC
GCCTAACAAAGCTCAAAATCAATGCGATCCAAATGAAAGAAACTGTCGAA
GAGAATGCCGCTACGACTGAAAAGGTGTTCCAGGAAAGAAATTATCAGAT
CGACGCCGCTGTCGTGCGGATTATGAAGACAAGGCGAACATTGCAACATA
CTGCATTGCTGTCTGAAATATACAGTCAGTTGCGGTTCCCGCATAAGCCT
GGAGATGTCAAGAAACGAATAGAGTCACTTATTGAACGCGAATATTTGGA
AAGGGATGAAAACAACCCGCAGACTTATCATTATTTGGCATAA back to topCoding sequence (CDS) from alignment at ScGOVlb_24229:462426..464618+ >Gvermi6918.t1 ID=Gvermi6918.t1|Name=Gvermi6918.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2193bp|location=Sequence derived from alignment at ScGOVlb_24229:462426..464618+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCGCATCCGCAGCTACGACCGCAAGCCCGCCGTGCCGCCCGAGCTCTT CCGCCACGCTTGGTCCGTGCATCTGCAGCCCGCCGTCGACGCCGTCCACC AGAGCCGCCCCGTCACCGCCTCCCTGCAGGAGCTGTACGGCCACGTGCAT GACGTCGTCCTGCATCGCCATGCGCCTGTGCTCTACGCCGCCTTGCGCGA CGCCTGTGACCGCCACATCGCCTCCAGCATTGCCAAGCTGGCTGCCGTGC GCGCGGGCGAGCGCGCCTTTCTCGACGCCGTTTTGGCCGAGTGGGATGCC TTCTGCGCTCACATGCTGCGCATTCGAGAGATCTTTCGCTACCTGGACAG AACCTATATTGTTCACGCCGCTCACCCCGAGGCGCGTTCTTTCTGGGACA TGGGTCTCCTCTTATTTCGCAATCATTTCTCAACCGCACCCAATCTGCAG AATCACACCGTCCACTGCCTTCTCTCGCTCATTAACAGTGAGCGCGACGG CGATGCCGTCGACGTCTCTCTCATTCGAAATCTTCTACAGATGTTCACCG CCATAGGCACATATGACAAGGCCTTTGAGAAACCCTTTTTGGCCGCCACA GACACGTACTATCGCAACGAGGCGCACAATCTCATTGCCTCACGAGACGT ACCGGCATATCTCAAACACGCCGAACATCGTATCTACGACGAATCTCAAC GCTCTCTACGAACTCTTGATCCGCGAACTCGCAATCCACTCATCTCAACC GTCGAAATGCGTCTGGTCTCTGACCATGTTCACACTCTACTCGAGAACGG CTTCAGTTCAATGTGCGACGACCACCGCAAAGATGACCTAAAGCGTTGCT ACGTCGTCCTTTCACGCGCCAGCGACCATATGCCTCCAGACTCTGACTCC CCGAACGAGCTCATGAAATCCCGACTCATTGACTACGTAAAGAAAGTTGG TCGCGCCATCGTCATGGACAAATCAAAGGACCCAGAGATGGTTCAGTCCC TGCTCAATTTGAAGTCCAGGCTTGATGACCTCGTCAATTACTCATTTGAT GGCACGGAGGCGTTCAACATTGCCATCAATTTTGCCTTCGAATCCTTTGT AAACGCCCGGGAGAACAAGCCTGCAGAACTCATAGCCAAGTTTGTCGATG GCATTCTGCGGACAGGTAACAAAGGCTTTTCCGAGGAGCAACTAGAGTCT ACGTTGGACAAGGCCCTTACGCTTTTCCGCTTTATTGATGGAAAAGACGT GTTTGAGGCCTTCTACAACAAGGATCTTGCTAAGCGTTTGCTTTACGACA AATCTGCAAGCTTGGATCTTGAAAAGAGTATGATTTCTAAACTAAAACAA GAATGTGGGCCTCAGTTCACATCCAAGCTGGAAGCCATGTTCCGAGATGT CGATGCTAGCAAGGACCTCATGCAGAGCTTTAGAACACACAAGATATCCA AAACTAAGCTACCCTCCGGCTTTGATCTCAACGTCTTCGTCTTGGAAGCT GCCAGATGGCCTCTTAGCACACAGCCCTCAAAAGTCAAGCTGCCTCAATT GCTAATGGATTGCCAAGAGGTCTTCAAGTTTTTTTACCTCACTAAACACA ATGGTCGTAAACTTGCTTGGCAACATTTAGATGGATCATGCACTGTGAAG GCTCATTTTCCAGAGGGGACCAAAATCTTGCAACTCTCATTGTATCAGAC TATTGTTATGGTTCTTTTCAATGACACTGACGAGATGTCATATCCTGACA TCGCTGAGGCAACAGGTATTGACGAGCAACCCCTGAAACGAACTCTACTA TCGTTGGCATGCGGAAAAGTTAGAGTTTTGCAAAAGAGGCCTAAAGGTCC TCGGATTGCATCTACTGATTCTTTTGTGTTTAACAAGAAGTTTTCTCATC GCCTAACAAAGCTCAAAATCAATGCGATCCAAATGAAAGAAACTGTCGAA GAGAATGCCGCTACGACTGAAAAGGTGTTCCAGGAAAGAAATTATCAGAT CGACGCCGCTGTCGTGCGGATTATGAAGACAAGGCGAACATTGCAACATA CTGCATTGCTGTCTGAAATATACAGTCAGTTGCGGTTCCCGCATAAGCCT GGAGATGTCAAGAAACGAATAGAGTCACTTATTGAACGCGAATATTTGGA AAGGGATGAAAACAACCCGCAGACTTATCATTATTTGGCATAA back to top
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