Gvermi7053.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7053.t1
Unique NameGvermi7053.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1315980..1316639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1223523.H340_23843
PFAMsCoprogen_oxidas
Max annot lvl201174|Actinobacteria
KEGG rclassRC00884
KEGG koko:K00228
KEGG ReactionR03220
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
Evalue9.02e-05
EggNOG OGsCOG0408@1|root,COG0408@2|Bacteria,2IK0Y@201174|Actinobacteria
EC1.3.3.3
DescriptionCoproporphyrinogen III oxidase
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7053Gvermi7053Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1315980..1316639 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7053.t1.stop1Gvermi7053.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1315980..1315982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7053.t1.CDS1Gvermi7053.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1315980..1316639 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7053.t1.exon1Gvermi7053.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1315980..1316639 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7053.t1.start1Gvermi7053.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1316637..1316639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7053.t1Gvermi7053.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1315980..1316639 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7053.t1 ID=Gvermi7053.t1|Name=Gvermi7053.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=220bp
LRKESVGISLNLAPRDEALPRLRADAHYFQIGAGSVAWWFAGAADLSVGR
AASPRRFAAVVAPFLRTWQRLCARHRLRPRAQRTAFLHACLAADRPCALH
RLDRDNAFNFIADVLDSLLPAYLPLLAPAPADHAFADWDGFQLSHPAHPD
HGRFGSETVDTFCISGGADCESTTLRANPLGSWRFSLAPSPLTTAGKLYR
TLRSDSRSARSSLLYVDFV*
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spliced messenger RNA

>Gvermi7053.t1 ID=Gvermi7053.t1|Name=Gvermi7053.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=660bp|location=Sequence derived from alignment at ScGOVlb_24229:1315980..1316639- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCGCAAGGAGAGCGTCGGCATCTCGCTCAACCTGGCGCCGCGCGACGA
GGCGCTGCCGCGCCTGCGCGCCGACGCGCACTACTTCCAGATCGGCGCCG
GCTCCGTCGCCTGGTGGTTCGCCGGCGCCGCCGACCTCAGCGTCGGCCGC
GCCGCGTCGCCGCGCCGCTTCGCCGCCGTCGTCGCCCCCTTCCTGCGCAC
GTGGCAGCGCCTGTGCGCCAGGCACCGCCTGCGCCCCCGCGCCCAGCGCA
CCGCCTTCCTGCACGCCTGCCTCGCCGCCGACCGCCCGTGCGCGCTGCAC
CGCCTGGACCGCGACAACGCCTTCAACTTTATCGCCGACGTGCTGGACTC
GCTGCTGCCGGCGTACCTGCCGCTGCTGGCGCCCGCCCCCGCCGACCACG
CCTTTGCCGACTGGGACGGCTTCCAACTGTCGCACCCCGCCCACCCCGAC
CACGGCCGCTTTGGAAGCGAGACCGTCGACACCTTTTGCATCTCGGGCGG
CGCCGACTGCGAGAGCACCACGCTTCGCGCCAATCCGCTCGGCTCGTGGC
GCTTTTCGCTGGCGCCCTCCCCGCTCACCACCGCCGGCAAGCTGTACCGC
ACGCTTCGCAGCGACAGCCGCAGTGCGCGTTCGTCTCTCTTGTACGTTGA
TTTTGTCTGA
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protein sequence of Gvermi7053.t1

>Gvermi7053.t1 ID=Gvermi7053.t1|Name=Gvermi7053.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=220bp
LRKESVGISLNLAPRDEALPRLRADAHYFQIGAGSVAWWFAGAADLSVGR
AASPRRFAAVVAPFLRTWQRLCARHRLRPRAQRTAFLHACLAADRPCALH
RLDRDNAFNFIADVLDSLLPAYLPLLAPAPADHAFADWDGFQLSHPAHPD
HGRFGSETVDTFCISGGADCESTTLRANPLGSWRFSLAPSPLTTAGKLYR
TLRSDSRSARSSLLYVDFV*
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mRNA from alignment at ScGOVlb_24229:1315980..1316639-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7053.t1 ID=Gvermi7053.t1|Name=Gvermi7053.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=660bp|location=Sequence derived from alignment at ScGOVlb_24229:1315980..1316639- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGCAAGGAGAGCGTCGGCATCTCGCTCAACCTGGCGCCGCGCGACGA
GGCGCTGCCGCGCCTGCGCGCCGACGCGCACTACTTCCAGATCGGCGCCG
GCTCCGTCGCCTGGTGGTTCGCCGGCGCCGCCGACCTCAGCGTCGGCCGC
GCCGCGTCGCCGCGCCGCTTCGCCGCCGTCGTCGCCCCCTTCCTGCGCAC
GTGGCAGCGCCTGTGCGCCAGGCACCGCCTGCGCCCCCGCGCCCAGCGCA
CCGCCTTCCTGCACGCCTGCCTCGCCGCCGACCGCCCGTGCGCGCTGCAC
CGCCTGGACCGCGACAACGCCTTCAACTTTATCGCCGACGTGCTGGACTC
GCTGCTGCCGGCGTACCTGCCGCTGCTGGCGCCCGCCCCCGCCGACCACG
CCTTTGCCGACTGGGACGGCTTCCAACTGTCGCACCCCGCCCACCCCGAC
CACGGCCGCTTTGGAAGCGAGACCGTCGACACCTTTTGCATCTCGGGCGG
CGCCGACTGCGAGAGCACCACGCTTCGCGCCAATCCGCTCGGCTCGTGGC
GCTTTTCGCTGGCGCCCTCCCCGCTCACCACCGCCGGCAAGCTGTACCGC
ACGCTTCGCAGCGACAGCCGCAGTGCGCGTTCGTCTCTCTTGTACGTTGA
TTTTGTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1315980..1316639-

>Gvermi7053.t1 ID=Gvermi7053.t1|Name=Gvermi7053.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=660bp|location=Sequence derived from alignment at ScGOVlb_24229:1315980..1316639- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGCAAGGAGAGCGTCGGCATCTCGCTCAACCTGGCGCCGCGCGACGA
GGCGCTGCCGCGCCTGCGCGCCGACGCGCACTACTTCCAGATCGGCGCCG
GCTCCGTCGCCTGGTGGTTCGCCGGCGCCGCCGACCTCAGCGTCGGCCGC
GCCGCGTCGCCGCGCCGCTTCGCCGCCGTCGTCGCCCCCTTCCTGCGCAC
GTGGCAGCGCCTGTGCGCCAGGCACCGCCTGCGCCCCCGCGCCCAGCGCA
CCGCCTTCCTGCACGCCTGCCTCGCCGCCGACCGCCCGTGCGCGCTGCAC
CGCCTGGACCGCGACAACGCCTTCAACTTTATCGCCGACGTGCTGGACTC
GCTGCTGCCGGCGTACCTGCCGCTGCTGGCGCCCGCCCCCGCCGACCACG
CCTTTGCCGACTGGGACGGCTTCCAACTGTCGCACCCCGCCCACCCCGAC
CACGGCCGCTTTGGAAGCGAGACCGTCGACACCTTTTGCATCTCGGGCGG
CGCCGACTGCGAGAGCACCACGCTTCGCGCCAATCCGCTCGGCTCGTGGC
GCTTTTCGCTGGCGCCCTCCCCGCTCACCACCGCCGGCAAGCTGTACCGC
ACGCTTCGCAGCGACAGCCGCAGTGCGCGTTCGTCTCTCTTGTACGTTGA
TTTTGTCTGA
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