Gvermi7087.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7087.t1
Unique NameGvermi7087.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1565615..1566457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003291836.1
PFAMsY_phosphatase2
Max annot lvl554915|Amoebozoa
KEGG koko:K18043
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Evalue6.44e-69
EggNOG OGsCOG2365@1|root,KOG1572@2759|Eukaryota,3XB3K@554915|Amoebozoa
EC3.1.3.48
DescriptionTyrosine phosphatase family
COG categoryV
BRITEko00000,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7087Gvermi7087Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1565615..1566457 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7087.t1.start1Gvermi7087.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1565615..1565617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7087.t1.CDS1Gvermi7087.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1565615..1566457 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7087.t1.exon1Gvermi7087.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1565615..1566457 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7087.t1.stop1Gvermi7087.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1566455..1566457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7087.t1Gvermi7087.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1565615..1566457 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7087.t1 ID=Gvermi7087.t1|Name=Gvermi7087.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=281bp
MSALQRLIDDESSQSVQRSSTTQPHGIAENGTRSIDQRAHQSCAHHLRDS
ISKDSAQKFSLPSTAISSQSTARPEDAPHDEEQNGVEHLLGSANISNSIA
PQTTTSEYRFVSVGGSLIPPINFGIVEEDLYRSGMPNELNFPFLERLQLR
TIIYLASDEVSEKLHDFIDDQDIQLLHLFQDDDIPTPWKPISEETVLSAM
ELLLSTSTYPVYIMCSQGRHRTGTVVGCLRKLQRWSLSSIFEEYNRHADG
KGRLVNEQFIELFDTDLINLPSVNRPKWLR*
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spliced messenger RNA

>Gvermi7087.t1 ID=Gvermi7087.t1|Name=Gvermi7087.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=843bp|location=Sequence derived from alignment at ScGOVlb_24229:1565615..1566457+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCACTGCAGCGCCTCATTGACGACGAATCATCTCAATCTGTTCA
GAGATCAAGCACTACACAGCCCCATGGAATTGCTGAAAACGGAACGCGAA
GCATTGATCAACGTGCTCATCAATCGTGTGCACACCACTTGCGTGATAGT
ATTTCCAAGGATAGTGCCCAAAAATTCTCATTGCCCTCCACGGCCATTTC
ATCTCAGTCAACTGCGCGACCCGAAGATGCGCCACATGATGAAGAACAAA
ACGGTGTTGAACATTTGTTGGGTTCTGCCAATATAAGTAATTCTATAGCA
CCTCAAACTACTACCTCCGAATACCGCTTTGTCTCTGTCGGTGGTTCACT
CATCCCTCCCATAAATTTTGGTATCGTGGAAGAAGATCTGTATCGATCTG
GAATGCCTAATGAGTTAAACTTTCCGTTCCTGGAACGTTTACAGTTGCGC
ACTATCATTTACTTGGCTTCAGATGAAGTGTCTGAGAAGTTGCATGACTT
CATTGATGACCAGGATATCCAGCTTCTGCACTTGTTTCAAGATGACGACA
TACCTACTCCATGGAAGCCTATCAGCGAGGAAACGGTTTTGTCTGCCATG
GAATTATTGTTGAGCACTTCAACGTACCCCGTTTACATCATGTGCTCACA
AGGACGACACAGGACTGGAACAGTTGTTGGATGTCTGCGGAAGCTACAGC
GATGGAGTCTGTCCAGCATATTCGAAGAGTACAATCGACACGCCGACGGA
AAAGGCCGTCTTGTAAACGAACAGTTTATCGAACTTTTCGACACGGATTT
GATAAACTTGCCGTCTGTTAACCGACCTAAGTGGTTACGGTAA
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protein sequence of Gvermi7087.t1

>Gvermi7087.t1 ID=Gvermi7087.t1|Name=Gvermi7087.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=281bp
MSALQRLIDDESSQSVQRSSTTQPHGIAENGTRSIDQRAHQSCAHHLRDS
ISKDSAQKFSLPSTAISSQSTARPEDAPHDEEQNGVEHLLGSANISNSIA
PQTTTSEYRFVSVGGSLIPPINFGIVEEDLYRSGMPNELNFPFLERLQLR
TIIYLASDEVSEKLHDFIDDQDIQLLHLFQDDDIPTPWKPISEETVLSAM
ELLLSTSTYPVYIMCSQGRHRTGTVVGCLRKLQRWSLSSIFEEYNRHADG
KGRLVNEQFIELFDTDLINLPSVNRPKWLR*
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mRNA from alignment at ScGOVlb_24229:1565615..1566457+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7087.t1 ID=Gvermi7087.t1|Name=Gvermi7087.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=843bp|location=Sequence derived from alignment at ScGOVlb_24229:1565615..1566457+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAGCACTGCAGCGCCTCATTGACGACGAATCATCTCAATCTGTTCA
GAGATCAAGCACTACACAGCCCCATGGAATTGCTGAAAACGGAACGCGAA
GCATTGATCAACGTGCTCATCAATCGTGTGCACACCACTTGCGTGATAGT
ATTTCCAAGGATAGTGCCCAAAAATTCTCATTGCCCTCCACGGCCATTTC
ATCTCAGTCAACTGCGCGACCCGAAGATGCGCCACATGATGAAGAACAAA
ACGGTGTTGAACATTTGTTGGGTTCTGCCAATATAAGTAATTCTATAGCA
CCTCAAACTACTACCTCCGAATACCGCTTTGTCTCTGTCGGTGGTTCACT
CATCCCTCCCATAAATTTTGGTATCGTGGAAGAAGATCTGTATCGATCTG
GAATGCCTAATGAGTTAAACTTTCCGTTCCTGGAACGTTTACAGTTGCGC
ACTATCATTTACTTGGCTTCAGATGAAGTGTCTGAGAAGTTGCATGACTT
CATTGATGACCAGGATATCCAGCTTCTGCACTTGTTTCAAGATGACGACA
TACCTACTCCATGGAAGCCTATCAGCGAGGAAACGGTTTTGTCTGCCATG
GAATTATTGTTGAGCACTTCAACGTACCCCGTTTACATCATGTGCTCACA
AGGACGACACAGGACTGGAACAGTTGTTGGATGTCTGCGGAAGCTACAGC
GATGGAGTCTGTCCAGCATATTCGAAGAGTACAATCGACACGCCGACGGA
AAAGGCCGTCTTGTAAACGAACAGTTTATCGAACTTTTCGACACGGATTT
GATAAACTTGCCGTCTGTTAACCGACCTAAGTGGTTACGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1565615..1566457+

>Gvermi7087.t1 ID=Gvermi7087.t1|Name=Gvermi7087.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=843bp|location=Sequence derived from alignment at ScGOVlb_24229:1565615..1566457+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAGCACTGCAGCGCCTCATTGACGACGAATCATCTCAATCTGTTCA
GAGATCAAGCACTACACAGCCCCATGGAATTGCTGAAAACGGAACGCGAA
GCATTGATCAACGTGCTCATCAATCGTGTGCACACCACTTGCGTGATAGT
ATTTCCAAGGATAGTGCCCAAAAATTCTCATTGCCCTCCACGGCCATTTC
ATCTCAGTCAACTGCGCGACCCGAAGATGCGCCACATGATGAAGAACAAA
ACGGTGTTGAACATTTGTTGGGTTCTGCCAATATAAGTAATTCTATAGCA
CCTCAAACTACTACCTCCGAATACCGCTTTGTCTCTGTCGGTGGTTCACT
CATCCCTCCCATAAATTTTGGTATCGTGGAAGAAGATCTGTATCGATCTG
GAATGCCTAATGAGTTAAACTTTCCGTTCCTGGAACGTTTACAGTTGCGC
ACTATCATTTACTTGGCTTCAGATGAAGTGTCTGAGAAGTTGCATGACTT
CATTGATGACCAGGATATCCAGCTTCTGCACTTGTTTCAAGATGACGACA
TACCTACTCCATGGAAGCCTATCAGCGAGGAAACGGTTTTGTCTGCCATG
GAATTATTGTTGAGCACTTCAACGTACCCCGTTTACATCATGTGCTCACA
AGGACGACACAGGACTGGAACAGTTGTTGGATGTCTGCGGAAGCTACAGC
GATGGAGTCTGTCCAGCATATTCGAAGAGTACAATCGACACGCCGACGGA
AAAGGCCGTCTTGTAAACGAACAGTTTATCGAACTTTTCGACACGGATTT
GATAAACTTGCCGTCTGTTAACCGACCTAAGTGGTTACGGTAA
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