Gvermi7059.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7059.t1
Unique Name	Gvermi7059.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	588

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:1338443..1340206 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38727.Pavir.J40088.1.p
PFAMs	Glyco_transf_92,zf-C3HC4
Max annot lvl	35493\|Streptophyta
Evalue	3.51e-15
EggNOG OGs	COG2802@1\|root,KOG4159@2759\|Eukaryota,388R2@33090\|Viridiplantae,3G77C@35493\|Streptophyta,3KRF3@4447\|Liliopsida,3I5RU@38820\|Poales
Description	Glycosyl transferase family 2
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7059	Gvermi7059	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 1338443..1340206 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7059.t1.start1	Gvermi7059.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 1338443..1338445 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7059.t1.CDS1	Gvermi7059.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 1338443..1340206 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7059.t1.exon1	Gvermi7059.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 1338443..1340206 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7059.t1.stop1	Gvermi7059.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 1340204..1340206 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7059.t1	Gvermi7059.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 1338443..1340206 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:1338443..1340206+
coding sequence from alignment at ScGOVlb_24229:1338443..1340206+

mRNA sequence

>Gvermi7059.t1 ID=Gvermi7059.t1|Name=Gvermi7059.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=588bp
MSANLRSAEQPSPHSTKPPSRLCLQWLSRLRVLLSSTNTARTLVVLCVCI
LVLAILIPPLIFHEELFIHKSWSNSYKQYVAQAISKSYSIFSPKTAISSA
RWKLPPHIETTYKLHRNAPQLNRHALTHWTRPYVFLHYTRPYPTNRSQTE
LFIYATGVTMGAFDRGFVVHGCLVGDDVYPCEAYPGDVYSCTVLRPISKG
EFISLVVPRNEYVDQQLNNTVQINDTVNVTLHHGDLVALPNHTRLHGDHL
YNGPHSLMYVNSHQRFEALGDDRDPEAPGSEPRYEVCLATQIKPFTNYLP
QWIAYYKRIGVDMVYIIDNDADEDLSQVYKHRDDVQVLYWPWRRSQTQAL
SYMTVAARPRCEWIIMADVDEFAMLGIGKQNQLADKQVLSSYLRRRLSSS
YKQFMFWFLVMGNSGYVEAPEKPMPEAYIHKFSHQSKNGKSVAYTDHWWK
NCVVHRFGGVPSLQAPVQKNASNLYEPVDEDDQPIMVHYHHRAVEDHITK
EKYGSASTTDGKRDPVASLFMPKDVPKWVTKVDDQLTYTYFRDIYRAIME
KPFDFKQTLVRKSMGQRCVARRMSGGNGGVVPVQEEP*

spliced messenger RNA

>Gvermi7059.t1 ID=Gvermi7059.t1|Name=Gvermi7059.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1764bp|location=Sequence derived from alignment at ScGOVlb_24229:1338443..1340206+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCGAATCTCCGATCCGCTGAGCAACCCTCTCCGCACTCGACCAA
ACCGCCCTCCCGTTTGTGCCTCCAGTGGCTCTCGCGCCTGCGAGTCTTGC
TCAGCTCTACAAACACCGCTCGTACCTTGGTCGTGCTGTGTGTCTGCATA
CTGGTTCTCGCAATATTAATCCCTCCTCTCATCTTTCACGAAGAGCTTTT
TATCCACAAGAGCTGGTCAAACAGCTACAAACAATATGTGGCCCAGGCCA
TATCCAAGTCATACTCAATATTCTCACCGAAAACAGCCATCTCATCTGCG
AGATGGAAACTCCCTCCACACATCGAAACCACCTACAAACTGCATCGGAA
CGCGCCCCAATTGAATCGTCACGCTCTTACCCATTGGACCCGTCCGTACG
TGTTTCTGCATTACACCAGACCCTATCCGACAAACCGATCTCAAACAGAG
TTGTTTATCTATGCCACTGGAGTCACTATGGGCGCCTTTGATCGTGGTTT
TGTCGTTCACGGTTGTCTAGTCGGTGATGATGTATATCCGTGTGAAGCCT
ACCCGGGAGATGTGTACTCCTGTACCGTTTTACGTCCGATTTCAAAAGGA
GAGTTCATATCGCTTGTTGTGCCTCGAAATGAGTATGTAGACCAACAGCT
GAACAACACCGTGCAAATTAATGACACCGTGAATGTTACCCTTCACCACG
GTGATCTTGTCGCTCTACCGAATCATACTCGCCTTCACGGTGACCACTTA
TACAATGGGCCTCATTCCTTGATGTACGTAAACTCACATCAGAGGTTTGA
GGCGTTGGGAGATGATAGAGACCCGGAAGCTCCTGGCTCTGAGCCTCGCT
ATGAAGTCTGTCTTGCCACACAGATCAAGCCGTTCACTAATTATCTACCT
CAGTGGATTGCATACTACAAACGTATTGGGGTCGACATGGTGTATATCAT
CGACAATGATGCTGATGAAGACCTTTCTCAAGTCTACAAGCATCGTGATG
ATGTTCAAGTATTGTACTGGCCTTGGCGTCGTTCTCAAACTCAAGCGTTG
AGCTACATGACTGTTGCCGCGCGACCGCGATGTGAATGGATCATCATGGC
TGACGTGGATGAATTTGCAATGCTCGGTATTGGAAAGCAGAATCAACTAG
CTGATAAGCAAGTCTTGAGTTCATATTTGAGACGACGTCTGAGCAGCAGT
TACAAACAGTTCATGTTTTGGTTCTTGGTAATGGGCAACTCTGGCTACGT
CGAAGCTCCAGAGAAGCCAATGCCAGAGGCATACATTCACAAATTTTCCC
ACCAATCAAAGAACGGTAAGTCCGTCGCGTACACAGATCACTGGTGGAAG
AATTGTGTCGTGCATCGCTTTGGTGGAGTGCCTTCATTACAAGCGCCAGT
CCAGAAGAACGCTTCGAACTTATATGAACCGGTTGATGAAGATGATCAGC
CGATCATGGTTCATTACCATCATCGTGCGGTTGAGGATCACATCACAAAG
GAAAAGTATGGGTCGGCATCGACGACAGATGGGAAGCGTGACCCTGTAGC
CTCTCTGTTCATGCCCAAAGATGTACCAAAGTGGGTGACCAAGGTTGATG
ATCAGTTGACGTACACATATTTCCGTGACATCTATCGCGCCATAATGGAA
AAACCTTTTGATTTCAAACAAACTCTGGTCCGGAAGTCCATGGGACAACG
ATGTGTTGCTAGGCGAATGAGTGGCGGGAACGGTGGGGTAGTGCCTGTTC
AAGAAGAACCATGA

protein sequence of Gvermi7059.t1

>Gvermi7059.t1 ID=Gvermi7059.t1|Name=Gvermi7059.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=588bp
MSANLRSAEQPSPHSTKPPSRLCLQWLSRLRVLLSSTNTARTLVVLCVCI
LVLAILIPPLIFHEELFIHKSWSNSYKQYVAQAISKSYSIFSPKTAISSA
RWKLPPHIETTYKLHRNAPQLNRHALTHWTRPYVFLHYTRPYPTNRSQTE
LFIYATGVTMGAFDRGFVVHGCLVGDDVYPCEAYPGDVYSCTVLRPISKG
EFISLVVPRNEYVDQQLNNTVQINDTVNVTLHHGDLVALPNHTRLHGDHL
YNGPHSLMYVNSHQRFEALGDDRDPEAPGSEPRYEVCLATQIKPFTNYLP
QWIAYYKRIGVDMVYIIDNDADEDLSQVYKHRDDVQVLYWPWRRSQTQAL
SYMTVAARPRCEWIIMADVDEFAMLGIGKQNQLADKQVLSSYLRRRLSSS
YKQFMFWFLVMGNSGYVEAPEKPMPEAYIHKFSHQSKNGKSVAYTDHWWK
NCVVHRFGGVPSLQAPVQKNASNLYEPVDEDDQPIMVHYHHRAVEDHITK
EKYGSASTTDGKRDPVASLFMPKDVPKWVTKVDDQLTYTYFRDIYRAIME
KPFDFKQTLVRKSMGQRCVARRMSGGNGGVVPVQEEP*

mRNA from alignment at ScGOVlb_24229:1338443..1340206+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7059.t1 ID=Gvermi7059.t1|Name=Gvermi7059.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1764bp|location=Sequence derived from alignment at ScGOVlb_24229:1338443..1340206+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCGAATCTCCGATCCGCTGAGCAACCCTCTCCGCACTCGACCAA
ACCGCCCTCCCGTTTGTGCCTCCAGTGGCTCTCGCGCCTGCGAGTCTTGC
TCAGCTCTACAAACACCGCTCGTACCTTGGTCGTGCTGTGTGTCTGCATA
CTGGTTCTCGCAATATTAATCCCTCCTCTCATCTTTCACGAAGAGCTTTT
TATCCACAAGAGCTGGTCAAACAGCTACAAACAATATGTGGCCCAGGCCA
TATCCAAGTCATACTCAATATTCTCACCGAAAACAGCCATCTCATCTGCG
AGATGGAAACTCCCTCCACACATCGAAACCACCTACAAACTGCATCGGAA
CGCGCCCCAATTGAATCGTCACGCTCTTACCCATTGGACCCGTCCGTACG
TGTTTCTGCATTACACCAGACCCTATCCGACAAACCGATCTCAAACAGAG
TTGTTTATCTATGCCACTGGAGTCACTATGGGCGCCTTTGATCGTGGTTT
TGTCGTTCACGGTTGTCTAGTCGGTGATGATGTATATCCGTGTGAAGCCT
ACCCGGGAGATGTGTACTCCTGTACCGTTTTACGTCCGATTTCAAAAGGA
GAGTTCATATCGCTTGTTGTGCCTCGAAATGAGTATGTAGACCAACAGCT
GAACAACACCGTGCAAATTAATGACACCGTGAATGTTACCCTTCACCACG
GTGATCTTGTCGCTCTACCGAATCATACTCGCCTTCACGGTGACCACTTA
TACAATGGGCCTCATTCCTTGATGTACGTAAACTCACATCAGAGGTTTGA
GGCGTTGGGAGATGATAGAGACCCGGAAGCTCCTGGCTCTGAGCCTCGCT
ATGAAGTCTGTCTTGCCACACAGATCAAGCCGTTCACTAATTATCTACCT
CAGTGGATTGCATACTACAAACGTATTGGGGTCGACATGGTGTATATCAT
CGACAATGATGCTGATGAAGACCTTTCTCAAGTCTACAAGCATCGTGATG
ATGTTCAAGTATTGTACTGGCCTTGGCGTCGTTCTCAAACTCAAGCGTTG
AGCTACATGACTGTTGCCGCGCGACCGCGATGTGAATGGATCATCATGGC
TGACGTGGATGAATTTGCAATGCTCGGTATTGGAAAGCAGAATCAACTAG
CTGATAAGCAAGTCTTGAGTTCATATTTGAGACGACGTCTGAGCAGCAGT
TACAAACAGTTCATGTTTTGGTTCTTGGTAATGGGCAACTCTGGCTACGT
CGAAGCTCCAGAGAAGCCAATGCCAGAGGCATACATTCACAAATTTTCCC
ACCAATCAAAGAACGGTAAGTCCGTCGCGTACACAGATCACTGGTGGAAG
AATTGTGTCGTGCATCGCTTTGGTGGAGTGCCTTCATTACAAGCGCCAGT
CCAGAAGAACGCTTCGAACTTATATGAACCGGTTGATGAAGATGATCAGC
CGATCATGGTTCATTACCATCATCGTGCGGTTGAGGATCACATCACAAAG
GAAAAGTATGGGTCGGCATCGACGACAGATGGGAAGCGTGACCCTGTAGC
CTCTCTGTTCATGCCCAAAGATGTACCAAAGTGGGTGACCAAGGTTGATG
ATCAGTTGACGTACACATATTTCCGTGACATCTATCGCGCCATAATGGAA
AAACCTTTTGATTTCAAACAAACTCTGGTCCGGAAGTCCATGGGACAACG
ATGTGTTGCTAGGCGAATGAGTGGCGGGAACGGTGGGGTAGTGCCTGTTC
AAGAAGAACCATGA

Coding sequence (CDS) from alignment at ScGOVlb_24229:1338443..1340206+

>Gvermi7059.t1 ID=Gvermi7059.t1|Name=Gvermi7059.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1764bp|location=Sequence derived from alignment at ScGOVlb_24229:1338443..1340206+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCGAATCTCCGATCCGCTGAGCAACCCTCTCCGCACTCGACCAA
ACCGCCCTCCCGTTTGTGCCTCCAGTGGCTCTCGCGCCTGCGAGTCTTGC
TCAGCTCTACAAACACCGCTCGTACCTTGGTCGTGCTGTGTGTCTGCATA
CTGGTTCTCGCAATATTAATCCCTCCTCTCATCTTTCACGAAGAGCTTTT
TATCCACAAGAGCTGGTCAAACAGCTACAAACAATATGTGGCCCAGGCCA
TATCCAAGTCATACTCAATATTCTCACCGAAAACAGCCATCTCATCTGCG
AGATGGAAACTCCCTCCACACATCGAAACCACCTACAAACTGCATCGGAA
CGCGCCCCAATTGAATCGTCACGCTCTTACCCATTGGACCCGTCCGTACG
TGTTTCTGCATTACACCAGACCCTATCCGACAAACCGATCTCAAACAGAG
TTGTTTATCTATGCCACTGGAGTCACTATGGGCGCCTTTGATCGTGGTTT
TGTCGTTCACGGTTGTCTAGTCGGTGATGATGTATATCCGTGTGAAGCCT
ACCCGGGAGATGTGTACTCCTGTACCGTTTTACGTCCGATTTCAAAAGGA
GAGTTCATATCGCTTGTTGTGCCTCGAAATGAGTATGTAGACCAACAGCT
GAACAACACCGTGCAAATTAATGACACCGTGAATGTTACCCTTCACCACG
GTGATCTTGTCGCTCTACCGAATCATACTCGCCTTCACGGTGACCACTTA
TACAATGGGCCTCATTCCTTGATGTACGTAAACTCACATCAGAGGTTTGA
GGCGTTGGGAGATGATAGAGACCCGGAAGCTCCTGGCTCTGAGCCTCGCT
ATGAAGTCTGTCTTGCCACACAGATCAAGCCGTTCACTAATTATCTACCT
CAGTGGATTGCATACTACAAACGTATTGGGGTCGACATGGTGTATATCAT
CGACAATGATGCTGATGAAGACCTTTCTCAAGTCTACAAGCATCGTGATG
ATGTTCAAGTATTGTACTGGCCTTGGCGTCGTTCTCAAACTCAAGCGTTG
AGCTACATGACTGTTGCCGCGCGACCGCGATGTGAATGGATCATCATGGC
TGACGTGGATGAATTTGCAATGCTCGGTATTGGAAAGCAGAATCAACTAG
CTGATAAGCAAGTCTTGAGTTCATATTTGAGACGACGTCTGAGCAGCAGT
TACAAACAGTTCATGTTTTGGTTCTTGGTAATGGGCAACTCTGGCTACGT
CGAAGCTCCAGAGAAGCCAATGCCAGAGGCATACATTCACAAATTTTCCC
ACCAATCAAAGAACGGTAAGTCCGTCGCGTACACAGATCACTGGTGGAAG
AATTGTGTCGTGCATCGCTTTGGTGGAGTGCCTTCATTACAAGCGCCAGT
CCAGAAGAACGCTTCGAACTTATATGAACCGGTTGATGAAGATGATCAGC
CGATCATGGTTCATTACCATCATCGTGCGGTTGAGGATCACATCACAAAG
GAAAAGTATGGGTCGGCATCGACGACAGATGGGAAGCGTGACCCTGTAGC
CTCTCTGTTCATGCCCAAAGATGTACCAAAGTGGGTGACCAAGGTTGATG
ATCAGTTGACGTACACATATTTCCGTGACATCTATCGCGCCATAATGGAA
AAACCTTTTGATTTCAAACAAACTCTGGTCCGGAAGTCCATGGGACAACG
ATGTGTTGCTAGGCGAATGAGTGGCGGGAACGGTGGGGTAGTGCCTGTTC
AAGAAGAACCATGA