Gvermi7073.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7073.t1
Unique NameGvermi7073.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1471073..1471813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173027.Mic7113_3624
PFAMsDUF2235
Max annot lvl1117|Cyanobacteria
Evalue2.79e-42
EggNOG OGsCOG3673@1|root,COG3673@2|Bacteria,1G1VC@1117|Cyanobacteria,1H9I8@1150|Oscillatoriales
Description'Conserved protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7073Gvermi7073Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1471073..1471813 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7073.t1.stop1Gvermi7073.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1471073..1471075 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7073.t1.CDS1Gvermi7073.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1471073..1471813 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7073.t1.exon1Gvermi7073.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1471073..1471813 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7073.t1.start1Gvermi7073.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1471811..1471813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7073.t1Gvermi7073.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1471073..1471813 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7073.t1 ID=Gvermi7073.t1|Name=Gvermi7073.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=247bp
MHESGLLYREHLDNVKEAYELYRDNDDVDSAIAKDFRAKYARRVPIKLLM
CFDTVGALGLPSGLPFPLSMIGDEERYRFHNTELSEYIENAIHLMSIDED
RKSFLPTPMTPNPKRGSKQLTQKFMPGSHSGVGGGNPPEIELSRNALFFL
LEEMKRRGLGMEFGGDLLPKEYTYDIEPLGPDPLFSRNNFFKAFSGGEQA
REIKSIHDLHETVIRRYNKFKNWRPKSLDHLKDSLLARLDKSVEET*
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spliced messenger RNA

>Gvermi7073.t1 ID=Gvermi7073.t1|Name=Gvermi7073.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=741bp|location=Sequence derived from alignment at ScGOVlb_24229:1471073..1471813- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGAGTCCGGCCTCTTGTACAGAGAACACCTCGACAACGTCAAAGA
GGCGTACGAATTGTACCGCGACAACGACGACGTCGATTCCGCGATTGCGA
AAGATTTTCGTGCCAAATACGCCAGAAGAGTTCCTATCAAGTTGCTTATG
TGCTTTGACACGGTGGGAGCGTTGGGACTGCCGTCAGGGTTGCCCTTCCC
ACTGTCTATGATTGGAGATGAAGAGCGATACCGCTTTCACAATACCGAAC
TCAGTGAATATATTGAGAACGCCATTCATTTGATGAGTATTGACGAGGAC
AGGAAATCATTCTTGCCTACACCTATGACACCAAATCCGAAGCGCGGTTC
GAAACAGCTCACTCAAAAGTTCATGCCAGGATCTCATAGTGGCGTAGGCG
GCGGGAACCCCCCTGAGATAGAGCTCTCCAGAAATGCGCTCTTCTTTTTG
TTGGAGGAGATGAAAAGAAGAGGGCTGGGCATGGAGTTTGGTGGTGACCT
CCTTCCGAAAGAATACACGTACGACATCGAGCCGCTTGGTCCAGATCCTT
TGTTCTCGCGCAACAATTTCTTTAAGGCTTTTTCCGGCGGTGAGCAGGCT
CGCGAAATTAAGAGCATACACGATCTCCATGAAACTGTGATCCGGAGGTA
CAACAAATTCAAGAATTGGAGACCCAAGTCGTTAGACCATCTCAAAGACT
CGTTGCTCGCTCGTCTGGACAAATCTGTGGAAGAAACTTGA
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protein sequence of Gvermi7073.t1

>Gvermi7073.t1 ID=Gvermi7073.t1|Name=Gvermi7073.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=247bp
MHESGLLYREHLDNVKEAYELYRDNDDVDSAIAKDFRAKYARRVPIKLLM
CFDTVGALGLPSGLPFPLSMIGDEERYRFHNTELSEYIENAIHLMSIDED
RKSFLPTPMTPNPKRGSKQLTQKFMPGSHSGVGGGNPPEIELSRNALFFL
LEEMKRRGLGMEFGGDLLPKEYTYDIEPLGPDPLFSRNNFFKAFSGGEQA
REIKSIHDLHETVIRRYNKFKNWRPKSLDHLKDSLLARLDKSVEET*
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mRNA from alignment at ScGOVlb_24229:1471073..1471813-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7073.t1 ID=Gvermi7073.t1|Name=Gvermi7073.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=741bp|location=Sequence derived from alignment at ScGOVlb_24229:1471073..1471813- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATGAGTCCGGCCTCTTGTACAGAGAACACCTCGACAACGTCAAAGA
GGCGTACGAATTGTACCGCGACAACGACGACGTCGATTCCGCGATTGCGA
AAGATTTTCGTGCCAAATACGCCAGAAGAGTTCCTATCAAGTTGCTTATG
TGCTTTGACACGGTGGGAGCGTTGGGACTGCCGTCAGGGTTGCCCTTCCC
ACTGTCTATGATTGGAGATGAAGAGCGATACCGCTTTCACAATACCGAAC
TCAGTGAATATATTGAGAACGCCATTCATTTGATGAGTATTGACGAGGAC
AGGAAATCATTCTTGCCTACACCTATGACACCAAATCCGAAGCGCGGTTC
GAAACAGCTCACTCAAAAGTTCATGCCAGGATCTCATAGTGGCGTAGGCG
GCGGGAACCCCCCTGAGATAGAGCTCTCCAGAAATGCGCTCTTCTTTTTG
TTGGAGGAGATGAAAAGAAGAGGGCTGGGCATGGAGTTTGGTGGTGACCT
CCTTCCGAAAGAATACACGTACGACATCGAGCCGCTTGGTCCAGATCCTT
TGTTCTCGCGCAACAATTTCTTTAAGGCTTTTTCCGGCGGTGAGCAGGCT
CGCGAAATTAAGAGCATACACGATCTCCATGAAACTGTGATCCGGAGGTA
CAACAAATTCAAGAATTGGAGACCCAAGTCGTTAGACCATCTCAAAGACT
CGTTGCTCGCTCGTCTGGACAAATCTGTGGAAGAAACTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1471073..1471813-

>Gvermi7073.t1 ID=Gvermi7073.t1|Name=Gvermi7073.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=741bp|location=Sequence derived from alignment at ScGOVlb_24229:1471073..1471813- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATGAGTCCGGCCTCTTGTACAGAGAACACCTCGACAACGTCAAAGA
GGCGTACGAATTGTACCGCGACAACGACGACGTCGATTCCGCGATTGCGA
AAGATTTTCGTGCCAAATACGCCAGAAGAGTTCCTATCAAGTTGCTTATG
TGCTTTGACACGGTGGGAGCGTTGGGACTGCCGTCAGGGTTGCCCTTCCC
ACTGTCTATGATTGGAGATGAAGAGCGATACCGCTTTCACAATACCGAAC
TCAGTGAATATATTGAGAACGCCATTCATTTGATGAGTATTGACGAGGAC
AGGAAATCATTCTTGCCTACACCTATGACACCAAATCCGAAGCGCGGTTC
GAAACAGCTCACTCAAAAGTTCATGCCAGGATCTCATAGTGGCGTAGGCG
GCGGGAACCCCCCTGAGATAGAGCTCTCCAGAAATGCGCTCTTCTTTTTG
TTGGAGGAGATGAAAAGAAGAGGGCTGGGCATGGAGTTTGGTGGTGACCT
CCTTCCGAAAGAATACACGTACGACATCGAGCCGCTTGGTCCAGATCCTT
TGTTCTCGCGCAACAATTTCTTTAAGGCTTTTTCCGGCGGTGAGCAGGCT
CGCGAAATTAAGAGCATACACGATCTCCATGAAACTGTGATCCGGAGGTA
CAACAAATTCAAGAATTGGAGACCCAAGTCGTTAGACCATCTCAAAGACT
CGTTGCTCGCTCGTCTGGACAAATCTGTGGAAGAAACTTGA
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