Gvermi6933.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6933.t1
Unique NameGvermi6933.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:612542..613382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0RB40
PFAMsMIP
Max annot lvl2836|Bacillariophyta
Evalue3.89e-53
EggNOG OGsCOG0580@1|root,KOG0223@2759|Eukaryota,2XG49@2836|Bacillariophyta
DescriptionMajor intrinsic protein
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6933Gvermi6933Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 612542..613382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6933.t1Gvermi6933.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 612542..613382 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6933.t1.stop1Gvermi6933.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 612542..612544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6933.t1.CDS1Gvermi6933.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 612542..612825 -
Gvermi6933.t1.CDS2Gvermi6933.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 612932..613382 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6933.t1.exon1Gvermi6933.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 612542..612825 -
Gvermi6933.t1.exon2Gvermi6933.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 612932..613382 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6933.t1.intron1Gvermi6933.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 612826..612931 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6933.t1.start1Gvermi6933.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 613380..613382 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6933.t1 ID=Gvermi6933.t1|Name=Gvermi6933.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=245bp
MALEDFRTKFGKVMMELVATAMLVMTIQISVSVSPLLAPLAIGLVLVLLV
YAAAPISGGHVNPAVSFAVFLRGKISLDEMLLYWLFQVAGGALGALLGGV
IAGSLAAVQIGDGFHFLQAFVAEFTFTALLCFVVLATATSSKVENNQYYG
AAIGLVVLVGAIAVGPISGGAFNPAVVLGLNLVKHFWKVPYMLWVTLADM
AGALAGSFVYYVVAPDEFEHFSDAAHQLSDQIASEAASLLPSRA*
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spliced messenger RNA

>Gvermi6933.t1 ID=Gvermi6933.t1|Name=Gvermi6933.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=735bp|location=Sequence derived from alignment at ScGOVlb_24229:612542..613382- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCGAGGACTTTCGCACCAAGTTTGGAAAGGTCATGATGGAGCT
GGTGGCCACCGCCATGCTGGTCATGACCATCCAGATCTCGGTGTCTGTGT
CGCCGCTGCTGGCGCCGCTCGCCATCGGGCTCGTGCTGGTGCTGCTCGTG
TACGCCGCCGCGCCCATCTCGGGCGGGCACGTCAACCCGGCCGTGTCGTT
CGCCGTGTTCCTGCGCGGCAAGATCTCGCTCGACGAGATGCTGCTGTATT
GGCTGTTCCAGGTGGCCGGCGGCGCGCTGGGCGCGCTGCTGGGCGGCGTC
ATCGCCGGCTCGCTGGCCGCCGTGCAGATCGGCGACGGCTTCCACTTCCT
GCAGGCGTTTGTGGCCGAGTTCACCTTCACGGCGCTGCTGTGCTTTGTGG
TGCTGGCCACCGCCACCAGCAGCAAGGTCGAGAACAACCAATACTACGGA
GCGGCCATCGGGCTCGTCGTGCTGGTGGGCGCCATCGCCGTGGGCCCCAT
CAGCGGCGGCGCGTTCAACCCCGCCGTGGTGCTCGGGCTCAACTTGGTCA
AGCACTTTTGGAAGGTGCCGTACATGCTGTGGGTGACGCTGGCCGACATG
GCCGGCGCGCTGGCCGGCAGCTTTGTGTACTACGTCGTGGCGCCGGACGA
GTTTGAGCACTTCTCCGACGCGGCGCACCAGCTGTCGGACCAGATCGCCA
GCGAGGCCGCGTCGCTGCTGCCGTCGCGCGCGTGA
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protein sequence of Gvermi6933.t1

>Gvermi6933.t1 ID=Gvermi6933.t1|Name=Gvermi6933.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=245bp
MALEDFRTKFGKVMMELVATAMLVMTIQISVSVSPLLAPLAIGLVLVLLV
YAAAPISGGHVNPAVSFAVFLRGKISLDEMLLYWLFQVAGGALGALLGGV
IAGSLAAVQIGDGFHFLQAFVAEFTFTALLCFVVLATATSSKVENNQYYG
AAIGLVVLVGAIAVGPISGGAFNPAVVLGLNLVKHFWKVPYMLWVTLADM
AGALAGSFVYYVVAPDEFEHFSDAAHQLSDQIASEAASLLPSRA*
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mRNA from alignment at ScGOVlb_24229:612542..613382-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6933.t1 ID=Gvermi6933.t1|Name=Gvermi6933.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=841bp|location=Sequence derived from alignment at ScGOVlb_24229:612542..613382- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTCGAGGACTTTCGCACCAAGTTTGGAAAGGTCATGATGGAGCT
GGTGGCCACCGCCATGCTGGTCATGACCATCCAGATCTCGGTGTCTGTGT
CGCCGCTGCTGGCGCCGCTCGCCATCGGGCTCGTGCTGGTGCTGCTCGTG
TACGCCGCCGCGCCCATCTCGGGCGGGCACGTCAACCCGGCCGTGTCGTT
CGCCGTGTTCCTGCGCGGCAAGATCTCGCTCGACGAGATGCTGCTGTATT
GGCTGTTCCAGGTGGCCGGCGGCGCGCTGGGCGCGCTGCTGGGCGGCGTC
ATCGCCGGCTCGCTGGCCGCCGTGCAGATCGGCGACGGCTTCCACTTCCT
GCAGGCGTTTGTGGCCGAGTTCACCTTCACGGCGCTGCTGTGCTTTGTGG
TGCTGGCCACCGCCACCAGCAGCAAGGTCGAGAACAACCAATACTACGGA
GGTAAGTGCCGCCGCCAAGTGCCGCCGCCGCCAAGCGCCGCCGCTGACCG
CGTCGTGTGTGCGCTTTGTTTTGCTCGTTTGTTTTGTGTGCGCGCGCGCG
TGAGTAGCGGCCATCGGGCTCGTCGTGCTGGTGGGCGCCATCGCCGTGGG
CCCCATCAGCGGCGGCGCGTTCAACCCCGCCGTGGTGCTCGGGCTCAACT
TGGTCAAGCACTTTTGGAAGGTGCCGTACATGCTGTGGGTGACGCTGGCC
GACATGGCCGGCGCGCTGGCCGGCAGCTTTGTGTACTACGTCGTGGCGCC
GGACGAGTTTGAGCACTTCTCCGACGCGGCGCACCAGCTGTCGGACCAGA
TCGCCAGCGAGGCCGCGTCGCTGCTGCCGTCGCGCGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:612542..613382-

>Gvermi6933.t1 ID=Gvermi6933.t1|Name=Gvermi6933.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=735bp|location=Sequence derived from alignment at ScGOVlb_24229:612542..613382- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTCGAGGACTTTCGCACCAAGTTTGGAAAGGTCATGATGGAGCT
GGTGGCCACCGCCATGCTGGTCATGACCATCCAGATCTCGGTGTCTGTGT
CGCCGCTGCTGGCGCCGCTCGCCATCGGGCTCGTGCTGGTGCTGCTCGTG
TACGCCGCCGCGCCCATCTCGGGCGGGCACGTCAACCCGGCCGTGTCGTT
CGCCGTGTTCCTGCGCGGCAAGATCTCGCTCGACGAGATGCTGCTGTATT
GGCTGTTCCAGGTGGCCGGCGGCGCGCTGGGCGCGCTGCTGGGCGGCGTC
ATCGCCGGCTCGCTGGCCGCCGTGCAGATCGGCGACGGCTTCCACTTCCT
GCAGGCGTTTGTGGCCGAGTTCACCTTCACGGCGCTGCTGTGCTTTGTGG
TGCTGGCCACCGCCACCAGCAGCAAGGTCGAGAACAACCAATACTACGGA
GCGGCCATCGGGCTCGTCGTGCTGGTGGGCGCCATCGCCGTGGGCCCCAT
CAGCGGCGGCGCGTTCAACCCCGCCGTGGTGCTCGGGCTCAACTTGGTCA
AGCACTTTTGGAAGGTGCCGTACATGCTGTGGGTGACGCTGGCCGACATG
GCCGGCGCGCTGGCCGGCAGCTTTGTGTACTACGTCGTGGCGCCGGACGA
GTTTGAGCACTTCTCCGACGCGGCGCACCAGCTGTCGGACCAGATCGCCA
GCGAGGCCGCGTCGCTGCTGCCGTCGCGCGCGTGA
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