Gvermi7090.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7090.t1
Unique NameGvermi7090.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1594033..1595268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7090Gvermi7090Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1594033..1595268 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7090.t1.stop1Gvermi7090.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1594033..1594035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7090.t1.CDS1Gvermi7090.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1594033..1595268 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7090.t1.exon1Gvermi7090.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1594033..1595268 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7090.t1.start1Gvermi7090.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1595266..1595268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7090.t1Gvermi7090.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1594033..1595268 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7090.t1 ID=Gvermi7090.t1|Name=Gvermi7090.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=412bp
MPRRNRTFCGDATDIALGDDRVKTSKPNQCRVGCQSFSHPDIAMTTRSAE
CAFDLCHLVQPFRTFDHGTRMCQPRAVCISACGEEPPGCVYSGTCREFTC
FHDRNTGRPANFTRITYAGPRTIVRVNDSVTSDKSPYDNSLDAVLISRDS
CHGTYYRIDSKVCRKSGDALLSVDEEQEFVQCRNVCRNIRNDDVEIVRMR
TSCNLCSSEAEKSVCIPQSECHARCEKPFTNVAGCVFTGTCKSMICVSGI
DSKLPAVIAVTNDTGLGGVIVSVDNTKAPTTLDPPVYAKYLEDVFVPDAR
IENTANNDEEVGSADHSQEPMVLTEPDNVKTLKNSTGPPRKRGRRPRLKT
GDGEGSKWGWLGPVVGLVGTAFTALAALAAAYIARGKAAHWGTKDSPFGG
DDLYDVDKDKL*
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spliced messenger RNA

>Gvermi7090.t1 ID=Gvermi7090.t1|Name=Gvermi7090.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at ScGOVlb_24229:1594033..1595268- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTAGGCGCAACCGTACATTCTGCGGGGATGCTACGGACATTGCACT
TGGCGACGATCGCGTCAAAACTTCGAAGCCCAATCAATGTCGCGTGGGTT
GTCAGTCATTTTCACATCCGGACATTGCCATGACCACTCGGTCGGCCGAG
TGCGCCTTCGATCTCTGCCATCTCGTGCAGCCGTTTCGTACGTTTGACCA
TGGTACGCGTATGTGTCAGCCACGAGCAGTTTGCATTTCTGCTTGCGGCG
AAGAGCCCCCAGGTTGCGTGTACTCAGGCACATGTCGCGAGTTCACATGC
TTTCATGACAGGAACACAGGGCGGCCGGCCAACTTCACCAGAATCACATA
TGCTGGACCTCGCACTATAGTTCGCGTGAATGACTCTGTAACATCCGATA
AATCTCCATATGACAACTCACTCGATGCGGTGCTGATATCCAGAGATAGT
TGCCATGGAACTTACTATCGTATTGACAGCAAAGTCTGTAGGAAATCTGG
AGACGCGTTGCTCTCGGTCGACGAAGAGCAAGAATTTGTTCAATGTCGTA
ATGTTTGCCGAAACATCCGAAACGATGACGTGGAGATAGTGCGGATGAGG
ACGTCGTGTAATCTGTGCAGTTCGGAAGCTGAAAAGTCAGTTTGTATACC
TCAATCTGAATGCCATGCCAGATGTGAAAAGCCGTTCACGAATGTAGCAG
GATGTGTTTTTACTGGTACTTGCAAGTCCATGATATGTGTGTCAGGAATT
GATTCAAAATTACCGGCTGTAATAGCTGTCACTAATGATACAGGACTGGG
GGGGGTCATTGTTTCTGTTGACAACACAAAAGCGCCTACTACATTGGATC
CACCTGTATACGCAAAATACTTGGAGGATGTTTTCGTACCAGACGCGAGG
ATTGAAAACACTGCGAATAATGATGAGGAAGTTGGATCTGCAGACCATTC
ACAGGAACCAATGGTATTAACGGAACCAGACAATGTTAAAACACTTAAGA
ATAGTACTGGTCCTCCCAGAAAAAGAGGCAGAAGGCCCAGGTTAAAAACT
GGCGACGGAGAAGGGTCAAAATGGGGTTGGCTTGGACCTGTTGTTGGATT
AGTGGGCACGGCTTTTACTGCATTGGCGGCTCTAGCTGCAGCTTACATTG
CTCGTGGGAAAGCAGCACACTGGGGTACGAAGGACTCTCCATTCGGAGGG
GATGACTTGTATGATGTGGATAAGGATAAATTATGA
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protein sequence of Gvermi7090.t1

>Gvermi7090.t1 ID=Gvermi7090.t1|Name=Gvermi7090.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=412bp
MPRRNRTFCGDATDIALGDDRVKTSKPNQCRVGCQSFSHPDIAMTTRSAE
CAFDLCHLVQPFRTFDHGTRMCQPRAVCISACGEEPPGCVYSGTCREFTC
FHDRNTGRPANFTRITYAGPRTIVRVNDSVTSDKSPYDNSLDAVLISRDS
CHGTYYRIDSKVCRKSGDALLSVDEEQEFVQCRNVCRNIRNDDVEIVRMR
TSCNLCSSEAEKSVCIPQSECHARCEKPFTNVAGCVFTGTCKSMICVSGI
DSKLPAVIAVTNDTGLGGVIVSVDNTKAPTTLDPPVYAKYLEDVFVPDAR
IENTANNDEEVGSADHSQEPMVLTEPDNVKTLKNSTGPPRKRGRRPRLKT
GDGEGSKWGWLGPVVGLVGTAFTALAALAAAYIARGKAAHWGTKDSPFGG
DDLYDVDKDKL*
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mRNA from alignment at ScGOVlb_24229:1594033..1595268-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7090.t1 ID=Gvermi7090.t1|Name=Gvermi7090.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at ScGOVlb_24229:1594033..1595268- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTAGGCGCAACCGTACATTCTGCGGGGATGCTACGGACATTGCACT
TGGCGACGATCGCGTCAAAACTTCGAAGCCCAATCAATGTCGCGTGGGTT
GTCAGTCATTTTCACATCCGGACATTGCCATGACCACTCGGTCGGCCGAG
TGCGCCTTCGATCTCTGCCATCTCGTGCAGCCGTTTCGTACGTTTGACCA
TGGTACGCGTATGTGTCAGCCACGAGCAGTTTGCATTTCTGCTTGCGGCG
AAGAGCCCCCAGGTTGCGTGTACTCAGGCACATGTCGCGAGTTCACATGC
TTTCATGACAGGAACACAGGGCGGCCGGCCAACTTCACCAGAATCACATA
TGCTGGACCTCGCACTATAGTTCGCGTGAATGACTCTGTAACATCCGATA
AATCTCCATATGACAACTCACTCGATGCGGTGCTGATATCCAGAGATAGT
TGCCATGGAACTTACTATCGTATTGACAGCAAAGTCTGTAGGAAATCTGG
AGACGCGTTGCTCTCGGTCGACGAAGAGCAAGAATTTGTTCAATGTCGTA
ATGTTTGCCGAAACATCCGAAACGATGACGTGGAGATAGTGCGGATGAGG
ACGTCGTGTAATCTGTGCAGTTCGGAAGCTGAAAAGTCAGTTTGTATACC
TCAATCTGAATGCCATGCCAGATGTGAAAAGCCGTTCACGAATGTAGCAG
GATGTGTTTTTACTGGTACTTGCAAGTCCATGATATGTGTGTCAGGAATT
GATTCAAAATTACCGGCTGTAATAGCTGTCACTAATGATACAGGACTGGG
GGGGGTCATTGTTTCTGTTGACAACACAAAAGCGCCTACTACATTGGATC
CACCTGTATACGCAAAATACTTGGAGGATGTTTTCGTACCAGACGCGAGG
ATTGAAAACACTGCGAATAATGATGAGGAAGTTGGATCTGCAGACCATTC
ACAGGAACCAATGGTATTAACGGAACCAGACAATGTTAAAACACTTAAGA
ATAGTACTGGTCCTCCCAGAAAAAGAGGCAGAAGGCCCAGGTTAAAAACT
GGCGACGGAGAAGGGTCAAAATGGGGTTGGCTTGGACCTGTTGTTGGATT
AGTGGGCACGGCTTTTACTGCATTGGCGGCTCTAGCTGCAGCTTACATTG
CTCGTGGGAAAGCAGCACACTGGGGTACGAAGGACTCTCCATTCGGAGGG
GATGACTTGTATGATGTGGATAAGGATAAATTATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1594033..1595268-

>Gvermi7090.t1 ID=Gvermi7090.t1|Name=Gvermi7090.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1236bp|location=Sequence derived from alignment at ScGOVlb_24229:1594033..1595268- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTAGGCGCAACCGTACATTCTGCGGGGATGCTACGGACATTGCACT
TGGCGACGATCGCGTCAAAACTTCGAAGCCCAATCAATGTCGCGTGGGTT
GTCAGTCATTTTCACATCCGGACATTGCCATGACCACTCGGTCGGCCGAG
TGCGCCTTCGATCTCTGCCATCTCGTGCAGCCGTTTCGTACGTTTGACCA
TGGTACGCGTATGTGTCAGCCACGAGCAGTTTGCATTTCTGCTTGCGGCG
AAGAGCCCCCAGGTTGCGTGTACTCAGGCACATGTCGCGAGTTCACATGC
TTTCATGACAGGAACACAGGGCGGCCGGCCAACTTCACCAGAATCACATA
TGCTGGACCTCGCACTATAGTTCGCGTGAATGACTCTGTAACATCCGATA
AATCTCCATATGACAACTCACTCGATGCGGTGCTGATATCCAGAGATAGT
TGCCATGGAACTTACTATCGTATTGACAGCAAAGTCTGTAGGAAATCTGG
AGACGCGTTGCTCTCGGTCGACGAAGAGCAAGAATTTGTTCAATGTCGTA
ATGTTTGCCGAAACATCCGAAACGATGACGTGGAGATAGTGCGGATGAGG
ACGTCGTGTAATCTGTGCAGTTCGGAAGCTGAAAAGTCAGTTTGTATACC
TCAATCTGAATGCCATGCCAGATGTGAAAAGCCGTTCACGAATGTAGCAG
GATGTGTTTTTACTGGTACTTGCAAGTCCATGATATGTGTGTCAGGAATT
GATTCAAAATTACCGGCTGTAATAGCTGTCACTAATGATACAGGACTGGG
GGGGGTCATTGTTTCTGTTGACAACACAAAAGCGCCTACTACATTGGATC
CACCTGTATACGCAAAATACTTGGAGGATGTTTTCGTACCAGACGCGAGG
ATTGAAAACACTGCGAATAATGATGAGGAAGTTGGATCTGCAGACCATTC
ACAGGAACCAATGGTATTAACGGAACCAGACAATGTTAAAACACTTAAGA
ATAGTACTGGTCCTCCCAGAAAAAGAGGCAGAAGGCCCAGGTTAAAAACT
GGCGACGGAGAAGGGTCAAAATGGGGTTGGCTTGGACCTGTTGTTGGATT
AGTGGGCACGGCTTTTACTGCATTGGCGGCTCTAGCTGCAGCTTACATTG
CTCGTGGGAAAGCAGCACACTGGGGTACGAAGGACTCTCCATTCGGAGGG
GATGACTTGTATGATGTGGATAAGGATAAATTATGA
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