Gvermi6930.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6930.t1
Unique NameGvermi6930.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:598968..599735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001744473.1
Preferred nameTPI1
PFAMsTIM
Max annot lvl33154|Opisthokonta
KEGG rclassRC00423
KEGG koko:K01803
KEGG ReactionR01015
KEGG Pathwayko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003
GOsGO:0000768,GO:0001968,GO:0003008,GO:0003674,GO:0003824,GO:0004807,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006949,GO:0006950,GO:0007154,GO:0007275,GO:0007520,GO:0007525,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009267,GO:0009277,GO:0009435,GO:0009605,GO:0009607,GO:0009612,GO:0009628,GO:0009653,GO:0009986,GO:0009987,GO:0009991,GO:0010033,GO:0010259,GO:0014902,GO:0016020,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019674,GO:0019682,GO:0019693,GO:0019725,GO:0019751,GO:0019752,GO:0019899,GO:0022610,GO:0030016,GO:0030017,GO:0030018,GO:0030154,GO:0030312,GO:0030446,GO:0030447,GO:0031012,GO:0031347,GO:0031349,GO:0031430,GO:0031625,GO:0031667,GO:0031668,GO:0031669,GO:0031672,GO:0031674,GO:0032501,GO:0032502,GO:0032787,GO:0033500,GO:0033554,GO:0033993,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035821,GO:0036170,GO:0036180,GO:0040007,GO:0042221,GO:0042592,GO:0042593,GO:0042594,GO:0042692,GO:0042802,GO:0042803,GO:0042866,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043236,GO:0043292,GO:0043436,GO:0043900,GO:0043903,GO:0044003,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044389,GO:0044403,GO:0044406,GO:0044416,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0044650,GO:0045454,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046677,GO:0046700,GO:0046939,GO:0046983,GO:0048518,GO:0048583,GO:0048584,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050840,GO:0050877,GO:0050896,GO:0051146,GO:0051186,GO:0051188,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052251,GO:0052255,GO:0052509,GO:0052510,GO:0055086,GO:0055114,GO:0061061,GO:0061615,GO:0061620,GO:0061621,GO:0061718,GO:0062039,GO:0062040,GO:0065007,GO:0065008,GO:0070887,GO:0071236,GO:0071310,GO:0071396,GO:0071496,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0075136,GO:0080134,GO:0090407,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:0099080,GO:0099081,GO:0099512,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901700,GO:1901701,GO:2000535
Evalue4.77e-108
EggNOG OGsCOG0149@1|root,KOG1643@2759|Eukaryota,38ETQ@33154|Opisthokonta
EC5.3.1.1
Descriptiontriose-phosphate isomerase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6930Gvermi6930Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 598968..599735 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6930.t1.start1Gvermi6930.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 598968..598970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6930.t1.CDS1Gvermi6930.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 598968..599735 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6930.t1.exon1Gvermi6930.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 598968..599735 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6930.t1.stop1Gvermi6930.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 599733..599735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6930.t1Gvermi6930.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 598968..599735 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6930.t1 ID=Gvermi6930.t1|Name=Gvermi6930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=256bp
MSRTFFVGGNWKCNGSLKSITDLCAAWSKSTDNGAKYSDKPVQIVIAPPA
LYALAVRDLLPSNFHVALQDAYVATGAFTGEIAADMVADAAIPWVILGHS
ERRSIFNESDQLVADKTAYALSKGLSVIACIGELLEEREAGNTMAVNERQ
LSAIAAKVTDWSKVVIAYEPVWAIGTGKVATPEQAQEVHQFLRQWLSSNV
SADVASSTRIIYGGSVKPANANDLAAQADIDGFLVGGASLKPDFVSVIDS
YSSKA*
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spliced messenger RNA

>Gvermi6930.t1 ID=Gvermi6930.t1|Name=Gvermi6930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=768bp|location=Sequence derived from alignment at ScGOVlb_24229:598968..599735+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGCACCTTCTTTGTCGGCGGCAACTGGAAATGCAATGGCTCCCT
CAAAAGCATCACCGATCTGTGCGCCGCATGGAGCAAGTCCACCGACAACG
GCGCTAAGTACTCCGACAAGCCCGTGCAAATCGTCATCGCCCCCCCCGCC
CTGTATGCGCTCGCCGTCCGCGATCTGCTTCCGAGCAACTTTCACGTCGC
CCTGCAGGACGCCTACGTCGCCACCGGCGCCTTCACCGGCGAGATCGCCG
CCGACATGGTAGCCGACGCGGCCATTCCGTGGGTCATCCTCGGCCACTCC
GAGCGCCGCTCCATCTTCAACGAAAGCGACCAGCTCGTCGCTGACAAGAC
CGCATACGCCCTCTCCAAAGGCCTCTCCGTCATCGCCTGCATCGGCGAGC
TGCTCGAGGAGCGCGAGGCCGGAAACACCATGGCCGTCAACGAGCGCCAA
CTGTCCGCCATCGCCGCAAAAGTCACCGACTGGAGCAAGGTCGTCATCGC
GTACGAGCCGGTGTGGGCCATCGGCACGGGCAAGGTCGCCACGCCGGAGC
AGGCGCAGGAGGTTCACCAGTTTTTGCGCCAGTGGCTGTCGTCCAACGTC
AGCGCCGACGTCGCCTCTTCCACGCGCATCATTTACGGCGGCTCCGTCAA
ACCAGCCAACGCCAACGACCTTGCCGCCCAGGCTGATATCGACGGCTTCT
TAGTGGGAGGCGCCTCGCTTAAACCAGATTTCGTCTCAGTCATTGATTCC
TACTCGTCCAAGGCCTGA
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protein sequence of Gvermi6930.t1

>Gvermi6930.t1 ID=Gvermi6930.t1|Name=Gvermi6930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=256bp
MSRTFFVGGNWKCNGSLKSITDLCAAWSKSTDNGAKYSDKPVQIVIAPPA
LYALAVRDLLPSNFHVALQDAYVATGAFTGEIAADMVADAAIPWVILGHS
ERRSIFNESDQLVADKTAYALSKGLSVIACIGELLEEREAGNTMAVNERQ
LSAIAAKVTDWSKVVIAYEPVWAIGTGKVATPEQAQEVHQFLRQWLSSNV
SADVASSTRIIYGGSVKPANANDLAAQADIDGFLVGGASLKPDFVSVIDS
YSSKA*
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mRNA from alignment at ScGOVlb_24229:598968..599735+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6930.t1 ID=Gvermi6930.t1|Name=Gvermi6930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=768bp|location=Sequence derived from alignment at ScGOVlb_24229:598968..599735+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCGCACCTTCTTTGTCGGCGGCAACTGGAAATGCAATGGCTCCCT
CAAAAGCATCACCGATCTGTGCGCCGCATGGAGCAAGTCCACCGACAACG
GCGCTAAGTACTCCGACAAGCCCGTGCAAATCGTCATCGCCCCCCCCGCC
CTGTATGCGCTCGCCGTCCGCGATCTGCTTCCGAGCAACTTTCACGTCGC
CCTGCAGGACGCCTACGTCGCCACCGGCGCCTTCACCGGCGAGATCGCCG
CCGACATGGTAGCCGACGCGGCCATTCCGTGGGTCATCCTCGGCCACTCC
GAGCGCCGCTCCATCTTCAACGAAAGCGACCAGCTCGTCGCTGACAAGAC
CGCATACGCCCTCTCCAAAGGCCTCTCCGTCATCGCCTGCATCGGCGAGC
TGCTCGAGGAGCGCGAGGCCGGAAACACCATGGCCGTCAACGAGCGCCAA
CTGTCCGCCATCGCCGCAAAAGTCACCGACTGGAGCAAGGTCGTCATCGC
GTACGAGCCGGTGTGGGCCATCGGCACGGGCAAGGTCGCCACGCCGGAGC
AGGCGCAGGAGGTTCACCAGTTTTTGCGCCAGTGGCTGTCGTCCAACGTC
AGCGCCGACGTCGCCTCTTCCACGCGCATCATTTACGGCGGCTCCGTCAA
ACCAGCCAACGCCAACGACCTTGCCGCCCAGGCTGATATCGACGGCTTCT
TAGTGGGAGGCGCCTCGCTTAAACCAGATTTCGTCTCAGTCATTGATTCC
TACTCGTCCAAGGCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:598968..599735+

>Gvermi6930.t1 ID=Gvermi6930.t1|Name=Gvermi6930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=768bp|location=Sequence derived from alignment at ScGOVlb_24229:598968..599735+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCGCACCTTCTTTGTCGGCGGCAACTGGAAATGCAATGGCTCCCT
CAAAAGCATCACCGATCTGTGCGCCGCATGGAGCAAGTCCACCGACAACG
GCGCTAAGTACTCCGACAAGCCCGTGCAAATCGTCATCGCCCCCCCCGCC
CTGTATGCGCTCGCCGTCCGCGATCTGCTTCCGAGCAACTTTCACGTCGC
CCTGCAGGACGCCTACGTCGCCACCGGCGCCTTCACCGGCGAGATCGCCG
CCGACATGGTAGCCGACGCGGCCATTCCGTGGGTCATCCTCGGCCACTCC
GAGCGCCGCTCCATCTTCAACGAAAGCGACCAGCTCGTCGCTGACAAGAC
CGCATACGCCCTCTCCAAAGGCCTCTCCGTCATCGCCTGCATCGGCGAGC
TGCTCGAGGAGCGCGAGGCCGGAAACACCATGGCCGTCAACGAGCGCCAA
CTGTCCGCCATCGCCGCAAAAGTCACCGACTGGAGCAAGGTCGTCATCGC
GTACGAGCCGGTGTGGGCCATCGGCACGGGCAAGGTCGCCACGCCGGAGC
AGGCGCAGGAGGTTCACCAGTTTTTGCGCCAGTGGCTGTCGTCCAACGTC
AGCGCCGACGTCGCCTCTTCCACGCGCATCATTTACGGCGGCTCCGTCAA
ACCAGCCAACGCCAACGACCTTGCCGCCCAGGCTGATATCGACGGCTTCT
TAGTGGGAGGCGCCTCGCTTAAACCAGATTTCGTCTCAGTCATTGATTCC
TACTCGTCCAAGGCCTGA
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