Gvermi6929.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6929.t1
Unique NameGvermi6929.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length486
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:596812..598269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog314270.RB2083_1302
Preferred nameatzB
PFAMsAmidohydro_1
Max annot lvl28211|Alphaproteobacteria
Evalue1.21e-133
EggNOG OGsCOG0402@1|root,COG0402@2|Bacteria,1MVPA@1224|Proteobacteria,2TSZ0@28211|Alphaproteobacteria,3ZGI4@58840|unclassified Rhodobacteraceae
DescriptionCOG0402 Cytosine deaminase and related metal-dependent hydrolases
COG categoryF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6929Gvermi6929Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 596812..598269 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6929.t1.stop1Gvermi6929.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 596812..596814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6929.t1.CDS1Gvermi6929.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 596812..598269 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6929.t1.exon1Gvermi6929.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 596812..598269 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6929.t1.start1Gvermi6929.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 598267..598269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6929.t1Gvermi6929.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 596812..598269 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6929.t1 ID=Gvermi6929.t1|Name=Gvermi6929.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=486bp
MAPQPSIPTHRVLLKDIALLWTGDDDRLLTGCSIVVDSGIIQWVGPHHRL
PASLRASPCTTVDMSTCLVTPGLINTHHHMYQSLTKCLARDASLFSWLQT
LFPIWNFLTADMVYKSARFAIAELLLSGCTLTSDLLYLYPNDVRLDDTIR
AAKELGIRFHPCRGAVSVGEADGGLPPDTLVEDERHILSDMRRVIERYHD
ARDGAMVRIALAPCSPFSVSEQLMKSTAQLARSYPNVMLHTHFAENDADV
EYMRTNVQKGLVQFLEHCGWNRSDCWFAHCVKLSDSDDGDGYESSLEFFA
RRGLGVSHCPTSNCRLGSGAAPVAHMVKRGVAVSIGVDGSASNDSGNLLA
EVRMALMVARLREQSAAALSTSDVLRMATSGGATVLGRSDVGRIRAGMCA
DMAAWRLDAPSFAGSFHSHEAVLSALVLGNGGDLKAEWVMVNGVEVVRGG
ELAGDRDMVTITREHQEAAVKLAAIAADQLGRGVP*
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spliced messenger RNA

>Gvermi6929.t1 ID=Gvermi6929.t1|Name=Gvermi6929.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at ScGOVlb_24229:596812..598269- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGCAACCGTCCATCCCCACCCATCGCGTCCTGCTCAAGGATAT
CGCGCTGCTATGGACTGGCGACGACGACCGCTTGCTCACCGGCTGCTCCA
TTGTCGTCGACTCGGGCATCATCCAGTGGGTTGGCCCCCACCACCGCCTG
CCCGCCTCGCTCCGCGCCTCCCCCTGCACCACGGTCGACATGAGCACGTG
CCTCGTGACCCCCGGCCTCATCAACACGCACCACCACATGTACCAGAGCC
TCACCAAGTGTCTGGCGCGCGACGCCTCGCTGTTCAGCTGGTTGCAAACG
CTGTTCCCCATCTGGAACTTTCTCACCGCCGACATGGTGTACAAGTCCGC
GCGCTTCGCCATCGCCGAGCTGCTGCTGTCCGGCTGCACCCTCACGTCCG
ACCTGCTGTATTTGTACCCGAATGACGTGCGGCTGGATGACACCATCCGC
GCCGCCAAGGAGCTGGGCATCCGCTTTCACCCGTGCCGCGGCGCCGTGTC
GGTGGGCGAGGCCGACGGCGGGCTGCCGCCCGACACGCTGGTGGAGGACG
AGCGGCACATTCTCAGTGACATGCGACGCGTCATCGAGCGCTACCACGAC
GCGCGCGACGGCGCCATGGTGCGCATTGCGCTGGCGCCGTGCTCGCCGTT
CAGCGTGTCGGAGCAGCTGATGAAGAGCACGGCGCAGCTGGCGCGCTCGT
ACCCCAACGTCATGCTGCACACGCACTTTGCCGAGAACGACGCCGACGTA
GAGTACATGCGCACCAACGTGCAGAAGGGGCTGGTGCAGTTCCTGGAGCA
CTGCGGGTGGAACCGCAGCGACTGCTGGTTTGCGCACTGCGTCAAGCTGA
GCGACAGCGACGACGGCGACGGCTACGAGTCGTCGCTGGAGTTTTTTGCG
CGGCGCGGGCTCGGCGTGTCGCACTGCCCGACGTCCAACTGCCGGCTGGG
GTCGGGCGCGGCGCCCGTGGCGCACATGGTGAAGCGCGGCGTGGCCGTGA
GCATTGGCGTGGACGGGTCGGCCAGCAACGACTCGGGCAACCTGCTGGCC
GAGGTGCGCATGGCGCTCATGGTGGCGCGGCTGCGCGAGCAGAGCGCGGC
GGCGCTGAGCACGTCGGACGTGCTGCGCATGGCGACGTCGGGCGGGGCGA
CGGTGCTGGGGCGCTCGGACGTGGGGCGCATCCGCGCGGGGATGTGCGCC
GACATGGCGGCGTGGCGGCTGGACGCACCGTCGTTTGCGGGATCGTTCCA
CAGCCACGAGGCGGTGCTGAGCGCGCTGGTGCTGGGCAACGGCGGGGACC
TCAAGGCGGAGTGGGTGATGGTGAACGGGGTGGAGGTGGTGCGCGGCGGC
GAGCTTGCGGGCGACCGCGACATGGTGACGATAACGCGGGAGCACCAGGA
GGCGGCGGTGAAACTGGCGGCAATAGCGGCGGACCAGCTGGGGCGCGGCG
TGCCGTGA
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protein sequence of Gvermi6929.t1

>Gvermi6929.t1 ID=Gvermi6929.t1|Name=Gvermi6929.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=486bp
MAPQPSIPTHRVLLKDIALLWTGDDDRLLTGCSIVVDSGIIQWVGPHHRL
PASLRASPCTTVDMSTCLVTPGLINTHHHMYQSLTKCLARDASLFSWLQT
LFPIWNFLTADMVYKSARFAIAELLLSGCTLTSDLLYLYPNDVRLDDTIR
AAKELGIRFHPCRGAVSVGEADGGLPPDTLVEDERHILSDMRRVIERYHD
ARDGAMVRIALAPCSPFSVSEQLMKSTAQLARSYPNVMLHTHFAENDADV
EYMRTNVQKGLVQFLEHCGWNRSDCWFAHCVKLSDSDDGDGYESSLEFFA
RRGLGVSHCPTSNCRLGSGAAPVAHMVKRGVAVSIGVDGSASNDSGNLLA
EVRMALMVARLREQSAAALSTSDVLRMATSGGATVLGRSDVGRIRAGMCA
DMAAWRLDAPSFAGSFHSHEAVLSALVLGNGGDLKAEWVMVNGVEVVRGG
ELAGDRDMVTITREHQEAAVKLAAIAADQLGRGVP*
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mRNA from alignment at ScGOVlb_24229:596812..598269-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6929.t1 ID=Gvermi6929.t1|Name=Gvermi6929.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at ScGOVlb_24229:596812..598269- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGCAACCGTCCATCCCCACCCATCGCGTCCTGCTCAAGGATAT
CGCGCTGCTATGGACTGGCGACGACGACCGCTTGCTCACCGGCTGCTCCA
TTGTCGTCGACTCGGGCATCATCCAGTGGGTTGGCCCCCACCACCGCCTG
CCCGCCTCGCTCCGCGCCTCCCCCTGCACCACGGTCGACATGAGCACGTG
CCTCGTGACCCCCGGCCTCATCAACACGCACCACCACATGTACCAGAGCC
TCACCAAGTGTCTGGCGCGCGACGCCTCGCTGTTCAGCTGGTTGCAAACG
CTGTTCCCCATCTGGAACTTTCTCACCGCCGACATGGTGTACAAGTCCGC
GCGCTTCGCCATCGCCGAGCTGCTGCTGTCCGGCTGCACCCTCACGTCCG
ACCTGCTGTATTTGTACCCGAATGACGTGCGGCTGGATGACACCATCCGC
GCCGCCAAGGAGCTGGGCATCCGCTTTCACCCGTGCCGCGGCGCCGTGTC
GGTGGGCGAGGCCGACGGCGGGCTGCCGCCCGACACGCTGGTGGAGGACG
AGCGGCACATTCTCAGTGACATGCGACGCGTCATCGAGCGCTACCACGAC
GCGCGCGACGGCGCCATGGTGCGCATTGCGCTGGCGCCGTGCTCGCCGTT
CAGCGTGTCGGAGCAGCTGATGAAGAGCACGGCGCAGCTGGCGCGCTCGT
ACCCCAACGTCATGCTGCACACGCACTTTGCCGAGAACGACGCCGACGTA
GAGTACATGCGCACCAACGTGCAGAAGGGGCTGGTGCAGTTCCTGGAGCA
CTGCGGGTGGAACCGCAGCGACTGCTGGTTTGCGCACTGCGTCAAGCTGA
GCGACAGCGACGACGGCGACGGCTACGAGTCGTCGCTGGAGTTTTTTGCG
CGGCGCGGGCTCGGCGTGTCGCACTGCCCGACGTCCAACTGCCGGCTGGG
GTCGGGCGCGGCGCCCGTGGCGCACATGGTGAAGCGCGGCGTGGCCGTGA
GCATTGGCGTGGACGGGTCGGCCAGCAACGACTCGGGCAACCTGCTGGCC
GAGGTGCGCATGGCGCTCATGGTGGCGCGGCTGCGCGAGCAGAGCGCGGC
GGCGCTGAGCACGTCGGACGTGCTGCGCATGGCGACGTCGGGCGGGGCGA
CGGTGCTGGGGCGCTCGGACGTGGGGCGCATCCGCGCGGGGATGTGCGCC
GACATGGCGGCGTGGCGGCTGGACGCACCGTCGTTTGCGGGATCGTTCCA
CAGCCACGAGGCGGTGCTGAGCGCGCTGGTGCTGGGCAACGGCGGGGACC
TCAAGGCGGAGTGGGTGATGGTGAACGGGGTGGAGGTGGTGCGCGGCGGC
GAGCTTGCGGGCGACCGCGACATGGTGACGATAACGCGGGAGCACCAGGA
GGCGGCGGTGAAACTGGCGGCAATAGCGGCGGACCAGCTGGGGCGCGGCG
TGCCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:596812..598269-

>Gvermi6929.t1 ID=Gvermi6929.t1|Name=Gvermi6929.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1458bp|location=Sequence derived from alignment at ScGOVlb_24229:596812..598269- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGCAACCGTCCATCCCCACCCATCGCGTCCTGCTCAAGGATAT
CGCGCTGCTATGGACTGGCGACGACGACCGCTTGCTCACCGGCTGCTCCA
TTGTCGTCGACTCGGGCATCATCCAGTGGGTTGGCCCCCACCACCGCCTG
CCCGCCTCGCTCCGCGCCTCCCCCTGCACCACGGTCGACATGAGCACGTG
CCTCGTGACCCCCGGCCTCATCAACACGCACCACCACATGTACCAGAGCC
TCACCAAGTGTCTGGCGCGCGACGCCTCGCTGTTCAGCTGGTTGCAAACG
CTGTTCCCCATCTGGAACTTTCTCACCGCCGACATGGTGTACAAGTCCGC
GCGCTTCGCCATCGCCGAGCTGCTGCTGTCCGGCTGCACCCTCACGTCCG
ACCTGCTGTATTTGTACCCGAATGACGTGCGGCTGGATGACACCATCCGC
GCCGCCAAGGAGCTGGGCATCCGCTTTCACCCGTGCCGCGGCGCCGTGTC
GGTGGGCGAGGCCGACGGCGGGCTGCCGCCCGACACGCTGGTGGAGGACG
AGCGGCACATTCTCAGTGACATGCGACGCGTCATCGAGCGCTACCACGAC
GCGCGCGACGGCGCCATGGTGCGCATTGCGCTGGCGCCGTGCTCGCCGTT
CAGCGTGTCGGAGCAGCTGATGAAGAGCACGGCGCAGCTGGCGCGCTCGT
ACCCCAACGTCATGCTGCACACGCACTTTGCCGAGAACGACGCCGACGTA
GAGTACATGCGCACCAACGTGCAGAAGGGGCTGGTGCAGTTCCTGGAGCA
CTGCGGGTGGAACCGCAGCGACTGCTGGTTTGCGCACTGCGTCAAGCTGA
GCGACAGCGACGACGGCGACGGCTACGAGTCGTCGCTGGAGTTTTTTGCG
CGGCGCGGGCTCGGCGTGTCGCACTGCCCGACGTCCAACTGCCGGCTGGG
GTCGGGCGCGGCGCCCGTGGCGCACATGGTGAAGCGCGGCGTGGCCGTGA
GCATTGGCGTGGACGGGTCGGCCAGCAACGACTCGGGCAACCTGCTGGCC
GAGGTGCGCATGGCGCTCATGGTGGCGCGGCTGCGCGAGCAGAGCGCGGC
GGCGCTGAGCACGTCGGACGTGCTGCGCATGGCGACGTCGGGCGGGGCGA
CGGTGCTGGGGCGCTCGGACGTGGGGCGCATCCGCGCGGGGATGTGCGCC
GACATGGCGGCGTGGCGGCTGGACGCACCGTCGTTTGCGGGATCGTTCCA
CAGCCACGAGGCGGTGCTGAGCGCGCTGGTGCTGGGCAACGGCGGGGACC
TCAAGGCGGAGTGGGTGATGGTGAACGGGGTGGAGGTGGTGCGCGGCGGC
GAGCTTGCGGGCGACCGCGACATGGTGACGATAACGCGGGAGCACCAGGA
GGCGGCGGTGAAACTGGCGGCAATAGCGGCGGACCAGCTGGGGCGCGGCG
TGCCGTGA
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