Gvermi6891.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6891.t1
Unique NameGvermi6891.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length342
Homology
BLAST of Gvermi6891.t1 vs. uniprot
Match: R7QK57_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK57_CHOCR)

HSP 1 Score: 275 bits (704), Expect = 3.630e-86
Identity = 167/359 (46.52%), Postives = 207/359 (57.66%), Query Frame = 0
Query:    1 MLYFRSRDHNSTCPDARWCAADMCWEYLGEYQSLGHRDHNHIITCPRCSSKTCFKCERQLSFSTP-----VHACTSRKTNKAHNAMFGVWAMLHTKSCPACAARIQRNHGCSHMTCTRCSSYFXXXXKGYLNNGCPLPGRACICDRVMTAAAYSGLAVAGVVGSPLIFGAMLLGGPPYLAYRVVKARRTRALVRRNEAIYRRQNEDN--LRRTTNAFIASRSILRPDELLINDDD-LDSTSCMTIAESTLDDIRIMHAH---RPGRQRKSKPNDALI------IEERKMGPSRSASR--LTSSAAELRIAAEIVVVPQSSISTDGVPNAYANSCRPSRPFVLERRRGSSPAPHTMKRSV 340
            MLYFRSRD  S  PDARWCA DMCWE+LG   S        ++ C RC +  C KC++ +    P      H C +RK NKAH A+F +WA +HTK+CPACAARIQRNHGCSHMTCTRCSSYF    KG+LNNGCPLPGRAC+CDRVMTAAAYSGLAVAGV+GSP+I  A L+GG PY+AYRV KARR +    RN    RR  ED   +            +L+P+E++  +DD  DS S   +  +   ++ +  A    RP R+ +     A++      + E K G    A    +    +E             S S DG   A   SC+P RPFVLERRRGS       +R V
Sbjct:  109 MLYFRSRDRYSPYPDARWCATDMCWEFLGIVASAA--PDRSVVQCTRCRAHNCVKCDKLVPSLDPNVPSATHVCATRKPNKAHAALFSLWATVHTKACPACAARIQRNHGCSHMTCTRCSSYFCWRCKGFLNNGCPLPGRACVCDRVMTAAAYSGLAVAGVLGSPIIIAAALVGGGPYVAYRVFKARREKL---RN----RRPPEDGGGIHGRGRIPRGPGRVLQPNEMVTQEDDEFDSGSETRL--TAFSEVMVAEARGMVRPPRRVRVGGGSAVLEGVQVMVIEEKEGEETDADDPFIGEDGSE-------------STSEDGDDRA---SCKPDRPFVLERRRGSVGGSRVARRVV 440          
BLAST of Gvermi6891.t1 vs. uniprot
Match: A0A2V3IUF3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUF3_9FLOR)

HSP 1 Score: 212 bits (539), Expect = 1.740e-64
Identity = 121/204 (59.31%), Postives = 142/204 (69.61%), Query Frame = 0
Query:  143 MTAAAYSGLAVAGVVGSPLIFGAMLLGGPPYLAYRVVKARRTRALVRRNEAIYRRQNEDNLRRTTNAFIASRSILRPDELLINDDDLDSTSCMTIAESTLDDIRIMHAHRPGRQRKSKP-----NDALIIEERKMGPSRSASRLTSSAAELRIAAEIVVVPQSSISTDGVPNAYANSCRPSRPFVLERRRGSSPAPHTMKRSVA 341
            MTAAAYSGLAVA VVGSP+I  AML+GGPPYLAYR VKARRT AL RR+ + +R      +    NA++A+R ILRP ELL ND  L S S ++I +   DD+    +HRP RQRK+K      ND LIIEER MGPSRS SR TSS A+LR A+++VVV  +S S D  P  YA  CR SRPF+LERRRGSS  P TMKRS A
Sbjct:    1 MTAAAYSGLAVAAVVGSPIIVAAMLIGGPPYLAYRAVKARRTTALPRRHHSSFRLHRHGAVLHPPNAYVANRPILRPHELLANDHHLHSASYLSITDPVFDDLLNRRSHRPARQRKTKTEPLESNDTLIIEERVMGPSRSPSRHTSSTADLRNASDVVVVSHTSASADRAPALYAEHCRTSRPFILERRRGSSSTPLTMKRSSA 204          
BLAST of Gvermi6891.t1 vs. uniprot
Match: A0A7S1TIF4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TIF4_9RHOD)

HSP 1 Score: 140 bits (353), Expect = 7.780e-35
Identity = 80/201 (39.80%), Postives = 107/201 (53.23%), Query Frame = 0
Query:    1 MLYFRSRDHNSTCPDARWCAADMCWEYLGEYQSLGHRD---HNHIITCPRCSSKTCFKCERQLSFSTPVHACTSRKTNKAHNAMFGV----WAMLHTKSCPACAARIQRNHGCSHMTCTRCSSYFXXXXKGYLNNGCPLPGRACICDRVMTAAAYSGLAVAGVVGSPLIFGAMLLGGPPYLAYRVVKAR-RTRALVRRNEA 193
            +L+FRSR+ N+   D  WC  + CWE +   ++   +D    +  + C  CS+K CF C      +  V        NK H    GV    W M HTKSCP C  RIQ++ GC HM CTRC + F    +GYL  G    GRAC CD V++   Y+G+ V  V GSP+I GA ++GGP Y  YR V+   + RA  R+ EA
Sbjct:  166 LLFFRSRELNAGRQDVVWCVKEECWELIEVSKTNQIKDPLTFSSCVQCRSCSTKVCFDC----GGAWHVDGSKCPLVNK-HRGTRGVTSSAWTMFHTKSCPTCKVRIQKDQGCLHMNCTRCGASFCWRCRGYLPCGWEQRGRACRCDTVVSGLLYTGIGVLTVAGSPIILGAAVVGGPSYWIYRSVRRHVKKRAQKRQAEA 361          
BLAST of Gvermi6891.t1 vs. uniprot
Match: A0A1X6NL85_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NL85_PORUM)

HSP 1 Score: 139 bits (349), Expect = 4.730e-33
Identity = 71/151 (47.02%), Postives = 91/151 (60.26%), Query Frame = 0
Query:   42 IITCPRCSSKTCFKCERQLSFSTPVHAC---TSRKTNKAHNAMFGVWAMLHTKSCPACAARIQRNHGCSHMTCTRCSSYFXXXXKGYLNNGCPLPGRACICDRVMTAAAYSGLAVAGVVGSPLIFGAMLLGGPPYLAYRVVKARRTRALVR 189
            ++TC  C ++ C  CE   + STP HAC   T   T +     F  WA LHT++CP C  RIQ++ GCSH+TC+RC +YF     GYL   C   GR C+C R   AA YSGLAV GVV SPL+  A ++GG PY AYR+ + RR R + R
Sbjct:  430 VVTCHDCGTRNCVLCE---TLSTPDHACRRPTVPLTVRKQAVSFWRWAALHTRACPRCRVRIQKDSGCSHVTCSRCGAYFCYRCLGYLPTCCAQAGRQCVCVRTANAAVYSGLAVVGVVFSPLLVAAAVIGGVPYGAYRLSRRRRRRVVQR 577          
BLAST of Gvermi6891.t1 vs. uniprot
Match: A0A5J4YJ59_PORPP (Putative E3 ubiquitin-protein ligase rbrA n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YJ59_PORPP)

HSP 1 Score: 67.0 bits (162), Expect = 1.210e-8
Identity = 36/100 (36.00%), Postives = 47/100 (47.00%), Query Frame = 0
Query:   39 HNHIITCPRCSSKTCFKCERQLSFSTPV-------HACTSRKTNKAHNAMFGVWAMLHTKSCPACAARIQRNHGCSHMTCTRCSSYFXXXXKG-YLNNGC 130
            H     C  C ++ C  CE  L             H C +RK     +A   +W MLHTK CP C  RIQ++ GCSHM C++C   F    +G Y + GC
Sbjct:  284 HPPAAQCTFCGTQMCAGCELVLRPDAGATWPGSKSHQCPTRKKMHVSSAKNKMWMMLHTKRCPRCRTRIQKDDGCSHMICSQCRFEFCWICRGQYDDEGC 383          
BLAST of Gvermi6891.t1 vs. uniprot
Match: A0A7S4VPD1_9STRA (RBR-type E3 ubiquitin transferase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VPD1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.440e-8
Identity = 37/124 (29.84%), Postives = 53/124 (42.74%), Query Frame = 0
Query:    2 LYFRSRDHN-----STCPDARWCAADMCWEYLGEYQSLG--HRDHNHIITCPRCSSKTCFKCERQLSFSTPVHACTSRKTNKAHNAMFGVWAMLHTKSCPACAARIQRNHGCSHMTCTRCSSYF 118
            L  + R+H       T   +RWC    C        ++G  H   +  + C  C S  CFKC  +       H     K      +    W ++HTK+CP C  RI++N GC+HMTC +C   F
Sbjct:  262 LLSKYREHQLKAFAETNMHSRWCPGKGC-----NRVAVGNPHLSASGKVVCGDCDSTFCFKCGEEPHSPLTCHDLIRWKDKCKDESETAKWIVVHTKTCPKCTTRIEKNGGCNHMTCRKCKYEF 380          
BLAST of Gvermi6891.t1 vs. uniprot
Match: A0A7N0TK45_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TK45_KALFE)

HSP 1 Score: 65.5 bits (158), Expect = 4.350e-8
Identity = 45/133 (33.83%), Postives = 64/133 (48.12%), Query Frame = 0
Query:    4 FRSRDHNSTCPDARWCAADMCWEYLGEYQSLGHRDHNHIITCPRCSSKTCFKCERQLSFSTPVHACTSRK-----TNKAHNAMFGVWAMLHTKSCPACAARIQRNHGCSHMTCTR-CSSYFXXXXKGYLNNGC 130
            F  R+        RWC +  C +Y  E+  LG +D    +TC RCS + C+ C  +     P    T++K     T+++ NA    W + ++K CP C   I++NHGCSHMTCT  CS  F     G     C
Sbjct:  192 FLIRNFVECSKTIRWCPSPGC-KYAVEFTGLGVQD----VTC-RCSYRFCWDCLDESH--RPADCETAKKWLTKNTSESGNAE---WILANSKPCPKCHRSIEKNHGCSHMTCTPPCSHQFCWICLGAWTKHC 313          
BLAST of Gvermi6891.t1 vs. uniprot
Match: A0A815M4E2_ADIRI (RBR-type E3 ubiquitin transferase n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815M4E2_ADIRI)

HSP 1 Score: 62.4 bits (150), Expect = 2.130e-7
Identity = 33/115 (28.70%), Postives = 54/115 (46.96%), Query Frame = 0
Query:    4 FRSRDHNSTCPDARWCAADMCWEYLGEYQSLGHRDHNHIITCPRCSSKTCFKCERQLSFSTPVHACTSRKTNKAHNAMFGVWAMLHTKSCPACAARIQRNHGCSHMTCTRCSSYF 118
            F +  H     +  WC+   C   +G+    G    N+I+TC  C  +TCF    ++ +   +      +T  A +    +W + ++K CP C  RI++N GC HM C +CS  F
Sbjct:  150 FITNRHIEQMDEFVWCSNPDCG--MGQLNDGGQA--NNIVTCFNCHKRTCFT--HRVPWHEGLTCAEYDQTRNADDEASQLWIIQNSKKCPNCPYRIEKNDGCDHMKCVKCSYEF 258          
BLAST of Gvermi6891.t1 vs. uniprot
Match: W6KM52_9TRYP (Uncharacterized protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KM52_9TRYP)

HSP 1 Score: 61.6 bits (148), Expect = 6.910e-7
Identity = 37/117 (31.62%), Postives = 54/117 (46.15%), Query Frame = 0
Query:   12 TCPDARWCAADM-CWEYLGEYQSLGHRDHNHIITCPRCSSKTCFKCERQL---SFSTPVHACTSRKTNKAHNAMFGVWAMLHTKSCPACAARIQRNHGCSHMTCTRCSSYFXXXXKG 124
            T P   WC  +  C   +   ++L  R+    + C  C  + CF C++     +F   V   T +    AH A F    + HTK CP C  RI+++HGC+HMTC +C   F     G
Sbjct:  160 TSPRLSWCPNEKGCEGIIYTPKALSSRES---VECNVCGLRFCFHCKKMPHSPAFCDQVQQWTQKLDKGAHTAGF---VLTHTKGCPNCNVRIEKSHGCNHMTC-KCGHEFCWMCMG 269          
BLAST of Gvermi6891.t1 vs. uniprot
Match: A0A523RJP3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Dependentiae bacterium TaxID=2030827 RepID=A0A523RJP3_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.180e-6
Identity = 35/121 (28.93%), Postives = 51/121 (42.15%), Query Frame = 0
Query:   14 PDARWCAADMCWEYLGEYQSLGHRDHNHIITCPRCSSKTCFKCERQLSFSTPVHACTSRKTNKAHNAMFGVWAMLHTKSCPACAARIQRNHGCSHMTCTRCSSYFXXXXKGYLN-NGCPLP 133
            P+A+ C    C      Y  L        I CP+C+ + C  C   L       +C + ++ +  N     W   HTK CP C  RI++N GC ++TC  C   F     G  + + C LP
Sbjct:  130 PNAKHCPTVNC-----PYVFLNDNPQAQTIRCPQCNQRYCSNC---LFLHDQKISCRAAESERKTNPENQQWLQAHTKPCPQCGTRIEKNGGCDYVTCRNCRHGFCLNCYGTHHVSKCTLP 242          
The following BLAST results are available for this feature:
BLAST of Gvermi6891.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
R7QK57_CHOCR3.630e-8646.52RING-type domain-containing protein n=1 Tax=Chondr... [more]
A0A2V3IUF3_9FLOR1.740e-6459.31Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S1TIF4_9RHOD7.780e-3539.80Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6NL85_PORUM4.730e-3347.02Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YJ59_PORPP1.210e-836.00Putative E3 ubiquitin-protein ligase rbrA n=1 Tax=... [more]
A0A7S4VPD1_9STRA2.440e-829.84RBR-type E3 ubiquitin transferase (Fragment) n=1 T... [more]
A0A7N0TK45_KALFE4.350e-833.83Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
A0A815M4E2_ADIRI2.130e-728.70RBR-type E3 ubiquitin transferase n=1 Tax=Adineta ... [more]
W6KM52_9TRYP6.910e-731.62Uncharacterized protein n=1 Tax=Phytomonas sp. iso... [more]
A0A523RJP3_9BACT1.180e-628.93Uncharacterized protein n=1 Tax=Candidatus Depende... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.120.1750coord: 67..212
e-value: 3.1E-12
score: 48.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 321..341
NoneNo IPR availablePANTHERPTHR11685:SF212E3 UBIQUITIN-PROTEIN LIGASE PARKINcoord: 12..131
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 147..175
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 176..341
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..146
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 85..127
NoneNo IPR availableTMHMMTMhelixcoord: 145..167
IPR031127E3 ubiquitin ligase RBR familyPANTHERPTHR11685RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAININGcoord: 12..131
IPR044066TRIAD supradomainPROSITEPS51873TRIADcoord: 1..143
score: 14.843723

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:372628..373653 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6891.t1Gvermi6891.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 372628..373653 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6891.t1 ID=Gvermi6891.t1|Name=Gvermi6891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=342bp
MLYFRSRDHNSTCPDARWCAADMCWEYLGEYQSLGHRDHNHIITCPRCSS
KTCFKCERQLSFSTPVHACTSRKTNKAHNAMFGVWAMLHTKSCPACAARI
QRNHGCSHMTCTRCSSYFCWRCKGYLNNGCPLPGRACICDRVMTAAAYSG
LAVAGVVGSPLIFGAMLLGGPPYLAYRVVKARRTRALVRRNEAIYRRQNE
DNLRRTTNAFIASRSILRPDELLINDDDLDSTSCMTIAESTLDDIRIMHA
HRPGRQRKSKPNDALIIEERKMGPSRSASRLTSSAAELRIAAEIVVVPQS
SISTDGVPNAYANSCRPSRPFVLERRRGSSPAPHTMKRSVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031127E3_UB_ligase_RBR
IPR044066TRIAD_supradom