Gvermi6891.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6891.t1
Unique NameGvermi6891.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:372628..373653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr1905
PFAMsIBR
Max annot lvl2836|Bacillariophyta
KEGG koko:K11968
Evalue1.09e-09
EggNOG OGsKOG1815@1|root,KOG1815@2759|Eukaryota,2XAUR@2836|Bacillariophyta
EC2.3.2.31
DescriptionIn Between Ring fingers
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6891Gvermi6891Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 372628..373653 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6891.t1.stop1Gvermi6891.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 372628..372630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6891.t1.CDS1Gvermi6891.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 372628..373653 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6891.t1.exon1Gvermi6891.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 372628..373653 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6891.t1.start1Gvermi6891.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 373651..373653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6891.t1Gvermi6891.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 372628..373653 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6891.t1 ID=Gvermi6891.t1|Name=Gvermi6891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=342bp
MLYFRSRDHNSTCPDARWCAADMCWEYLGEYQSLGHRDHNHIITCPRCSS
KTCFKCERQLSFSTPVHACTSRKTNKAHNAMFGVWAMLHTKSCPACAARI
QRNHGCSHMTCTRCSSYFCWRCKGYLNNGCPLPGRACICDRVMTAAAYSG
LAVAGVVGSPLIFGAMLLGGPPYLAYRVVKARRTRALVRRNEAIYRRQNE
DNLRRTTNAFIASRSILRPDELLINDDDLDSTSCMTIAESTLDDIRIMHA
HRPGRQRKSKPNDALIIEERKMGPSRSASRLTSSAAELRIAAEIVVVPQS
SISTDGVPNAYANSCRPSRPFVLERRRGSSPAPHTMKRSVA*
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spliced messenger RNA

>Gvermi6891.t1 ID=Gvermi6891.t1|Name=Gvermi6891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at ScGOVlb_24229:372628..373653- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTACTTTCGCTCGCGCGACCACAACAGCACGTGCCCCGATGCCAG
ATGGTGCGCCGCGGACATGTGTTGGGAGTATCTCGGTGAATACCAATCGC
TAGGTCACCGCGACCACAACCACATCATCACCTGCCCGCGCTGCTCGTCC
AAGACCTGCTTCAAGTGCGAGCGCCAGCTGTCCTTCTCCACCCCTGTGCA
CGCCTGCACCTCGCGGAAGACCAACAAGGCGCACAATGCAATGTTCGGCG
TGTGGGCCATGCTGCACACTAAGTCCTGCCCTGCTTGCGCCGCCCGCATT
CAGAGGAACCACGGCTGCAGCCACATGACGTGCACGCGCTGCTCCTCGTA
CTTTTGCTGGCGCTGCAAGGGCTACCTCAACAACGGCTGCCCGCTCCCGG
GCCGCGCCTGCATCTGCGACAGGGTCATGACGGCCGCCGCGTACTCAGGC
CTGGCCGTCGCCGGCGTCGTCGGCTCACCGCTCATTTTTGGCGCCATGTT
GCTGGGCGGTCCGCCGTACCTTGCGTACCGCGTCGTCAAAGCGCGTCGAA
CGCGCGCGCTTGTGCGCCGCAACGAAGCCATCTATCGCCGCCAGAACGAG
GACAACCTGCGTCGCACCACAAACGCCTTCATTGCAAGTCGCAGCATTCT
TCGCCCCGACGAGCTGCTCATCAACGATGATGACCTCGACAGCACGTCGT
GCATGACTATCGCCGAATCTACCCTCGACGATATCCGCATAATGCATGCG
CATCGCCCCGGCAGACAACGCAAGTCCAAGCCGAATGACGCTCTCATCAT
TGAGGAGAGAAAGATGGGCCCGTCTCGATCTGCCTCGCGCCTCACGTCGT
CGGCTGCTGAGCTTCGAATAGCCGCCGAAATCGTTGTCGTACCTCAGTCG
TCCATTTCGACTGACGGTGTTCCAAACGCGTATGCCAACTCTTGTCGCCC
TTCTCGCCCGTTTGTTTTGGAGCGGCGGCGGGGCTCATCTCCAGCGCCCC
ACACTATGAAACGCTCCGTCGCGTAG
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protein sequence of Gvermi6891.t1

>Gvermi6891.t1 ID=Gvermi6891.t1|Name=Gvermi6891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=342bp
MLYFRSRDHNSTCPDARWCAADMCWEYLGEYQSLGHRDHNHIITCPRCSS
KTCFKCERQLSFSTPVHACTSRKTNKAHNAMFGVWAMLHTKSCPACAARI
QRNHGCSHMTCTRCSSYFCWRCKGYLNNGCPLPGRACICDRVMTAAAYSG
LAVAGVVGSPLIFGAMLLGGPPYLAYRVVKARRTRALVRRNEAIYRRQNE
DNLRRTTNAFIASRSILRPDELLINDDDLDSTSCMTIAESTLDDIRIMHA
HRPGRQRKSKPNDALIIEERKMGPSRSASRLTSSAAELRIAAEIVVVPQS
SISTDGVPNAYANSCRPSRPFVLERRRGSSPAPHTMKRSVA*
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mRNA from alignment at ScGOVlb_24229:372628..373653-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6891.t1 ID=Gvermi6891.t1|Name=Gvermi6891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at ScGOVlb_24229:372628..373653- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCTACTTTCGCTCGCGCGACCACAACAGCACGTGCCCCGATGCCAG
ATGGTGCGCCGCGGACATGTGTTGGGAGTATCTCGGTGAATACCAATCGC
TAGGTCACCGCGACCACAACCACATCATCACCTGCCCGCGCTGCTCGTCC
AAGACCTGCTTCAAGTGCGAGCGCCAGCTGTCCTTCTCCACCCCTGTGCA
CGCCTGCACCTCGCGGAAGACCAACAAGGCGCACAATGCAATGTTCGGCG
TGTGGGCCATGCTGCACACTAAGTCCTGCCCTGCTTGCGCCGCCCGCATT
CAGAGGAACCACGGCTGCAGCCACATGACGTGCACGCGCTGCTCCTCGTA
CTTTTGCTGGCGCTGCAAGGGCTACCTCAACAACGGCTGCCCGCTCCCGG
GCCGCGCCTGCATCTGCGACAGGGTCATGACGGCCGCCGCGTACTCAGGC
CTGGCCGTCGCCGGCGTCGTCGGCTCACCGCTCATTTTTGGCGCCATGTT
GCTGGGCGGTCCGCCGTACCTTGCGTACCGCGTCGTCAAAGCGCGTCGAA
CGCGCGCGCTTGTGCGCCGCAACGAAGCCATCTATCGCCGCCAGAACGAG
GACAACCTGCGTCGCACCACAAACGCCTTCATTGCAAGTCGCAGCATTCT
TCGCCCCGACGAGCTGCTCATCAACGATGATGACCTCGACAGCACGTCGT
GCATGACTATCGCCGAATCTACCCTCGACGATATCCGCATAATGCATGCG
CATCGCCCCGGCAGACAACGCAAGTCCAAGCCGAATGACGCTCTCATCAT
TGAGGAGAGAAAGATGGGCCCGTCTCGATCTGCCTCGCGCCTCACGTCGT
CGGCTGCTGAGCTTCGAATAGCCGCCGAAATCGTTGTCGTACCTCAGTCG
TCCATTTCGACTGACGGTGTTCCAAACGCGTATGCCAACTCTTGTCGCCC
TTCTCGCCCGTTTGTTTTGGAGCGGCGGCGGGGCTCATCTCCAGCGCCCC
ACACTATGAAACGCTCCGTCGCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:372628..373653-

>Gvermi6891.t1 ID=Gvermi6891.t1|Name=Gvermi6891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1026bp|location=Sequence derived from alignment at ScGOVlb_24229:372628..373653- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCTACTTTCGCTCGCGCGACCACAACAGCACGTGCCCCGATGCCAG
ATGGTGCGCCGCGGACATGTGTTGGGAGTATCTCGGTGAATACCAATCGC
TAGGTCACCGCGACCACAACCACATCATCACCTGCCCGCGCTGCTCGTCC
AAGACCTGCTTCAAGTGCGAGCGCCAGCTGTCCTTCTCCACCCCTGTGCA
CGCCTGCACCTCGCGGAAGACCAACAAGGCGCACAATGCAATGTTCGGCG
TGTGGGCCATGCTGCACACTAAGTCCTGCCCTGCTTGCGCCGCCCGCATT
CAGAGGAACCACGGCTGCAGCCACATGACGTGCACGCGCTGCTCCTCGTA
CTTTTGCTGGCGCTGCAAGGGCTACCTCAACAACGGCTGCCCGCTCCCGG
GCCGCGCCTGCATCTGCGACAGGGTCATGACGGCCGCCGCGTACTCAGGC
CTGGCCGTCGCCGGCGTCGTCGGCTCACCGCTCATTTTTGGCGCCATGTT
GCTGGGCGGTCCGCCGTACCTTGCGTACCGCGTCGTCAAAGCGCGTCGAA
CGCGCGCGCTTGTGCGCCGCAACGAAGCCATCTATCGCCGCCAGAACGAG
GACAACCTGCGTCGCACCACAAACGCCTTCATTGCAAGTCGCAGCATTCT
TCGCCCCGACGAGCTGCTCATCAACGATGATGACCTCGACAGCACGTCGT
GCATGACTATCGCCGAATCTACCCTCGACGATATCCGCATAATGCATGCG
CATCGCCCCGGCAGACAACGCAAGTCCAAGCCGAATGACGCTCTCATCAT
TGAGGAGAGAAAGATGGGCCCGTCTCGATCTGCCTCGCGCCTCACGTCGT
CGGCTGCTGAGCTTCGAATAGCCGCCGAAATCGTTGTCGTACCTCAGTCG
TCCATTTCGACTGACGGTGTTCCAAACGCGTATGCCAACTCTTGTCGCCC
TTCTCGCCCGTTTGTTTTGGAGCGGCGGCGGGGCTCATCTCCAGCGCCCC
ACACTATGAAACGCTCCGTCGCGTAG
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