Gvermi6988.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi6988.t1
Unique Name	Gvermi6988.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	438

Homology

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BLAST of Gvermi6988.t1 vs. uniprot
Match: A0A2V3J4J0_9FLOR (Putative RNA-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4J0_9FLOR)

HSP 1 Score: 378 bits (970), Expect = 2.000e-127
Identity = 199/258 (77.13%), Postives = 224/258 (86.82%), Query Frame = 0

Query:  180 QPPRSRPQSEEPNMAQPAENGNSADAARAQSDKQAPHPDAAPHPGAEGSAPNLINLFVRNVARHVVEDQLVTLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEEAAKAAMDNLRDFDFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGGYGYGDPYMRRGSYRGRYGDPSRSRYDDRGWDSRRDQRPPYGRSPYEERDRIRRRYEGYEEGRGYPPRDLDRDQRPRERQPPVPRESADDYI 437
            QP RS     + +  +P+ENG  AD AR  SDK A + + A    A+G+APNLINLFVRNVARHV+E+QLV LFSK+GKV+SAIVVRDPLSGECRGFGFVKMYTEEAAKAA+++LRD+DFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTG YGYGD Y+RRGSYRGRYG+PSR RYD+RGWD+RRD RPPYGR PY+ER+R+RRRY+   EG  YPPRDLDR+QR RERQPPVPRESADDYI
Sbjct:    9 QPDRSYAPDTDQDTDRPSENGAPADDARNMSDKDAQNVEGAAQQDADGTAPNLINLFVRNVARHVMEEQLVNLFSKYGKVESAIVVRDPLSGECRGFGFVKMYTEEAAKAAIESLRDYDFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTG-YGYGDSYVRRGSYRGRYGEPSRHRYDERGWDARRDHRPPYGRPPYDERERVRRRYD---EGPRYPPRDLDREQRFRERQPPVPRESADDYI 262

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BLAST of Gvermi6988.t1 vs. uniprot
Match: R7Q5L8_CHOCR (Transformer-SR ribonucleoprotein, putative n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5L8_CHOCR)

HSP 1 Score: 237 bits (604), Expect = 4.730e-71
Identity = 136/218 (62.39%), Postives = 160/218 (73.39%), Query Frame = 0

Query:  223 PGAEGSAPNLINLFVRNVARHVVEDQLVTLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEEAAKAAMDNLRDFDFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGGYGYGDPYM--RRGSYRGR-YGDPSRSRYDDRGWDSRRDQRPPYGRSPYEERDRIRRRYEGYEEGRGYPPRDLDRDQRPRERQPPVPRESADDYI 437
            P  E     L+NLFVRNVA+HV+E+QLV LFSKFGKVDSA+VVRDP S ECRGFGFVKM  EE A  A++ LRDF+FEGR+I+VE+AKR APH RTPG YMGIDRRIRDRY+G+KR+R+Y  GGY +GDPY   RRG Y GR +    R RYDDRGWD R   RP   R  Y+ R++ R RYEG   G GY  R    +QR RER+ PVPRE ADD++
Sbjct:  137 PSDEQGGSELVNLFVRNVAKHVIEEQLVVLFSKFGKVDSAVVVRDPHSRECRGFGFVKMLHEEEAAQAIEALRDFEFEGRRIAVEKAKRKAPHSRTPGEYMGIDRRIRDRYSGMKRSRDY--GGYEHGDPYGMDRRGGYGGRRHESDGRGRYDDRGWDPR-GYRPQPMRPSYDGREQKRGRYEG---GGGYGSRADAGEQRFREREAPVPREPADDFV 348

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BLAST of Gvermi6988.t1 vs. uniprot
Match: G2Q7R8_MYCTT (RRM domain-containing protein n=2 Tax=Chaetomiaceae TaxID=35718 RepID=G2Q7R8_MYCTT)

HSP 1 Score: 108 bits (269), Expect = 1.070e-22
Identity = 77/180 (42.78%), Postives = 99/180 (55.00%), Query Frame = 0

Query:  199 NGNSADAARAQSDKQAPHPDAAPHPGAEGSAPNLINLFVRNVARHVVEDQLVTLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEEAAKAAMDNLRDFDFEGRKISVERAKRNAPHQRTPGAYMGIDRRI-RDRYAGIKRAREYDTGGYG-YGDPYMRRGSYRGRYGDPSRSRYDDRGW 376
            NGN  D A  +SD      D A +PG+        NLFV  +   + E ++  LF K+G+V+   ++RDP SGE RGFGFVKM T E A AAM+ LR    EGR +++E+A+R+ P   TPG Y G  +R  R RY   +R      GGYG YG  Y R  SYRG  G       DDRG+
Sbjct:   46 NGN--DRAPIKSDSGNKEDDGATNPGS--------NLFVTGIHPRLEESEITRLFEKYGEVEKCQIMRDPHSGESRGFGFVKMVTSEQADAAMEGLRGEVIEGRTLNIEKARRSRPRTPTPGKYFGPPKRDPRSRYDDRRR------GGYGGYGGGYGRDDSYRGGRGYXX----DDRGY 205

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BLAST of Gvermi6988.t1 vs. uniprot
Match: R4XC20_TAPDE (RRM domain-containing protein n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XC20_TAPDE)

HSP 1 Score: 103 bits (256), Expect = 1.060e-21
Identity = 71/156 (45.51%), Postives = 87/156 (55.77%), Query Frame = 0

Query:  234 NLFVRNVARHVVEDQLVTLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEEAAKAAMDNLRDFDFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDT----GGYGYGDPYMRRGSYRGRYGDP-SRSRYDDRGWDSRRDQRP 384
            NLFV  +A  + E +L  LFSK+G+VDS  ++ DP + + RGFGFV M T E A+AA + L   +  GR ISVE+A+R  P   TPG Y G  +R      G  R   YD     GGYG  D Y  R   R   GD    SRYDDRG+ SR D RP
Sbjct:   38 NLFVTGIAPRIDEIELRELFSKYGEVDSVQIMTDPHTRDSRGFGFVSMMTGEQAEAAREGLTGEEKYGRVISVEKARRARPRTPTPGKYFGPPKRDDAPRRGPPR--RYDDRGYGGGYGRDDRYGGRDDRRXYGGDRYGSSRYDDRGYSSRYDDRP 191

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BLAST of Gvermi6988.t1 vs. uniprot
Match: B2B7H0_PODAN (Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2 n=2 Tax=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) TaxID=515849 RepID=B2B7H0_PODAN)

HSP 1 Score: 101 bits (251), Expect = 3.970e-20
Identity = 67/164 (40.85%), Postives = 91/164 (55.49%), Query Frame = 0

Query:  224 GAEGSAPNLINLFVRNVARHVVEDQLVTLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEEAAKAAMDNLRDFDFEGRKISVERAKRNAPHQRTPGAYMGIDRRI--RDRYAGIKRAREYDTG----GYGYGDPYMRRGSYRGRYGDPSRSRYD----DRGWD 377
            G +G+     NLFV  +   + E ++  LF K+G+V+   +++DP +GE RGFGFVKM T E A+AA+D LR    EGR +S+E+A+R  P   TPG Y G  +R   R R+   +R   Y       GY  GD   R GS+RG  GD     YD    DRG+D
Sbjct:   63 GEDGAVNPGSNLFVTGIHPRLEEAEVTRLFEKYGEVEKCQIMKDPQTGESRGFGFVKMVTSEMAEAAIDGLRGEVIEGRTLSIEKARRARPRTPTPGKYFGPPKREDGRGRFDDRRRGGGYXXXXXXXGYRGGDDSYRGGSHRGYRGDDRA--YDRGAPDRGYD 224

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BLAST of Gvermi6988.t1 vs. uniprot
Match: G0SE27_CHATD (RRM domain-containing protein n=1 Tax=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) TaxID=759272 RepID=G0SE27_CHATD)

HSP 1 Score: 101 bits (251), Expect = 4.080e-20
Identity = 62/144 (43.06%), Postives = 84/144 (58.33%), Query Frame = 0

Query:  234 NLFVRNVARHVVEDQLVTLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEEAAKAAMDNLRDFDFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGGYGYGDPYMRRGSYRGRYGDPSRSRYDDRGWD 377
            NLFV  +   + E ++  LF K+G+V+   ++RDP +GE RGFGFVKM T E A+AAM+ L+    EGR +++E+A+R+ P   TPG Y G  +R   RY   +R      GGYG    Y R  SYRG  G       DDRG+D
Sbjct:   73 NLFVTGIHPRLEESEITRLFEKYGEVEKCQIMRDPHTGESRGFGFVKMMTSEQAEAAMEGLKGEIIEGRTLNIEKARRSRPRTPTPGKYFGPPKRDPRRYDDRRR------GGYG---GYGRDDSYRGGRGYGR----DDRGYD 203

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BLAST of Gvermi6988.t1 vs. uniprot
Match: G2QS49_THETT (RRM domain-containing protein n=2 Tax=Thermothielavioides terrestris TaxID=2587410 RepID=G2QS49_THETT)

HSP 1 Score: 100 bits (250), Expect = 4.210e-20
Identity = 67/164 (40.85%), Postives = 90/164 (54.88%), Query Frame = 0

Query:  199 NGNSADAARAQSDKQAPHPDAAPHPGAEGSAPNLINLFVRNVARHVVEDQLVTLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEEAAKAAMDNLRDFDFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGGYG-YGDPYMRRGSYRG 361
            NGN  D A  ++D  A   ++A +PG+        NLFV  +   + E ++  LF K+G+V+   ++RDP SGE RGFGFVKM T E A AAM+ LR    EGR +++E+A+R+ P   TPG Y G  +R         R   YD    G YG  Y R  SYRG
Sbjct:   47 NGN--DRAPLKNDGGAKEDESAVNPGS--------NLFVTGIHPRIEESEITRLFEKYGEVEKCQIMRDPHSGESRGFGFVKMMTSEQADAAMEGLRGEIIEGRTLNIEKARRSRPRTPTPGKYFGPPKRD-------PRGGRYDDRRRGAYGGGYGREDSYRG 193

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BLAST of Gvermi6988.t1 vs. uniprot
Match: A0A084GHA5_PSEDA (RRM domain-containing protein n=1 Tax=Pseudallescheria apiosperma TaxID=563466 RepID=A0A084GHA5_PSEDA)

HSP 1 Score: 100 bits (248), Expect = 9.640e-20
Identity = 66/166 (39.76%), Postives = 87/166 (52.41%), Query Frame = 0

Query:  218 DAAPHPGAEGSAPNLINLFVRNVARHVVEDQLVTLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEEAAKAAMDNLRDFDFEGRKISVERAKRNAPHQRTPGAYMGIDRR------IRDRYAGIKRAREYDTGGYGYGDPYMRRGSYRGRYGDPSRSRYDDRGWD 377
            D A +PG+        NLFV  +   + E ++  LF K+G+V+   ++RDP + E RGFGFVKM T E A AA + L+   FEGR +S+E+A+R  P   TPG Y G  +R        DRY   +R      G YG  DPY  RG  R         R DDRG+D
Sbjct:   83 DGAVNPGS--------NLFVTGIHPKLTELEVTRLFEKYGEVEKCQIMRDPHTKESRGFGFVKMATSEQADAAKEGLQGEPFEGRNLSIEKARRARPRTPTPGKYFGPPKRDPRGGRFHDRYDDRRRG---GYGSYGRDDPYRYRGYDR---------RQDDRGYD 228

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BLAST of Gvermi6988.t1 vs. uniprot
Match: A0A8H3FB46_9LECA (RRM domain-containing protein n=1 Tax=Gomphillus americanus TaxID=1940652 RepID=A0A8H3FB46_9LECA)

HSP 1 Score: 96.3 bits (238), Expect = 6.440e-19
Identity = 59/147 (40.14%), Postives = 83/147 (56.46%), Query Frame = 0

Query:  234 NLFVRNVARHVVEDQLVTLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEEAAKAAMDNLRDFDFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGGYGYGDPYMRRGSYRGRYGDPSRSRYDDRGWDSRR 380
            NLFV  +A  ++ED ++ +FSK+G+V    +++DP + E RGFGFV+M T E A+AA D L   +FEGR +S+E+A+R  P   TPG Y G  ++   R  G    R  D  GYG            GR+      R DDRG++ RR
Sbjct:   76 NLFVTGIAPRLMEDDIIRMFSKYGEVKHCAIMKDPHTQESRGFGFVEMVTTEQAEAAKDGLSGENFEGRTLSIEKARRARPRTPTPGKYFGPPKKEDRREGG----RFNDRRGYG------------GRF-----DRRDDRGFNDRR 201

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BLAST of Gvermi6988.t1 vs. uniprot
Match: A0A3N4LXC4_9PEZI (RNA-binding domain-containing protein n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4LXC4_9PEZI)

HSP 1 Score: 96.7 bits (239), Expect = 1.080e-18
Identity = 76/198 (38.38%), Postives = 99/198 (50.00%), Query Frame = 0

Query:  206 ARAQSDKQAPHP---DAAPHPGAEGSAPNL----INLFVRNVARHVVEDQLVTLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEEAAKAAMDNLRDFDFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGGYGYGDPYMRRGSYRGRYGDPSR---SRYDDRGWDS---RRDQRPPYGRSP 390
            ARA+ D+  P     DAA    A+G+         NLFV  +   + E+ +  LFSK+G+V+   ++ DP + E RGFGFVKM T E A AA + L+  +FEGR +S+E+A+RN P   TPG Y G  +R  D     +RA     GGY   D     G   G          SRYDDRG D     RD R  Y   P
Sbjct:   46 ARARDDRAPPSDSRMDAASTTSAQGNGAEARNTGTNLFVTGIHPRLTEEDVTRLFSKYGEVEKCQIMVDPHTKESRGFGFVKMATLEQADAAKEGLQSEEFEGRVLSIEKARRNRPRTPTPGKYFGPPKRADD----FRRAPP--RGGYSSYDDRRYGGRSHGSXXXXXXXXSSRYDDRGGDRYYRSRDSRDEYAPPP 237

The following BLAST results are available for this feature:

BLAST of Gvermi6988.t1 vs. uniprot

BLAST of Gvermi6988.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3J4J0_9FLOR	2.000e-127	77.13	Putative RNA-binding protein n=1 Tax=Gracilariopsi...	[more]
R7Q5L8_CHOCR	4.730e-71	62.39	Transformer-SR ribonucleoprotein, putative n=2 Tax...	[more]
G2Q7R8_MYCTT	1.070e-22	42.78	RRM domain-containing protein n=2 Tax=Chaetomiacea...	[more]
R4XC20_TAPDE	1.060e-21	45.51	RRM domain-containing protein n=1 Tax=Taphrina def...	[more]
B2B7H0_PODAN	3.970e-20	40.85	Podospora anserina S mat+ genomic DNA chromosome 2...	[more]
G0SE27_CHATD	4.080e-20	43.06	RRM domain-containing protein n=1 Tax=Chaetomium t...	[more]
G2QS49_THETT	4.210e-20	40.85	RRM domain-containing protein n=2 Tax=Thermothiela...	[more]
A0A084GHA5_PSEDA	9.640e-20	39.76	RRM domain-containing protein n=1 Tax=Pseudallesch...	[more]
A0A8H3FB46_9LECA	6.440e-19	40.14	RRM domain-containing protein n=1 Tax=Gomphillus a...	[more]
A0A3N4LXC4_9PEZI	1.080e-18	38.38	RNA-binding domain-containing protein n=1 Tax=Terf...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 234..307 e-value: 2.1E-23 score: 93.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 235..304 e-value: 5.1E-16 score: 58.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 233..311 score: 17.796343
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 164..324 e-value: 4.6E-26 score: 93.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 373..437
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..208
None	No IPR available	PANTHER	PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	coord: 183..401
None	No IPR available	PANTHER	PTHR48034:SF6	TRANSFORMER-2 SEX-DETERMINING PROTEIN	coord: 183..401
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 227..331

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:840685..842138 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6988.t1	Gvermi6988.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_24229 840685..842138 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi6988.t1 ID=Gvermi6988.t1|Name=Gvermi6988.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=438bp
MTVPYGEGAAASPRRDPPRDKDPYAPRKPPHDRHQEDRYHDEPMDHPRRD
HPTRHYARGSDRRLSPQRHHPRDDHHYPRDRDQPSPSRPDHQPRDPLPPH
HAPDHPSSPPPAEHMPHRRSHDAHGQNGNRRPPADSDADSDRNERRYDPD
HNTKPYGHEDKPTVHRQPPNASESARDSHQPPRSRPQSEEPNMAQPAENG
NSADAARAQSDKQAPHPDAAPHPGAEGSAPNLINLFVRNVARHVVEDQLV
TLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEEAAKAAMDNLRDFDFE
GRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGGYGYG
DPYMRRGSYRGRYGDPSRSRYDDRGWDSRRDQRPPYGRSPYEERDRIRRR
YEGYEEGRGYPPRDLDRDQRPRERQPPVPRESADDYI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf