Gvermi7097.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7097.t1
Unique Name	Gvermi7097.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	330

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:1635239..1636228 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	293227.XP_008715985.1
PFAMs	NTP_transferase
Max annot lvl	4751\|Fungi
Evalue	2.17e-27
EggNOG OGs	28NC4@1\|root,2QUXI@2759\|Eukaryota,39UE4@33154\|Opisthokonta,3NXTN@4751\|Fungi,3QSJ8@4890\|Ascomycota
Description	phosphatase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7097	Gvermi7097	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 1635239..1636228 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7097.t1.start1	Gvermi7097.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 1635239..1635241 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7097.t1.CDS1	Gvermi7097.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 1635239..1636228 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7097.t1.exon1	Gvermi7097.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 1635239..1636228 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7097.t1.stop1	Gvermi7097.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 1636226..1636228 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7097.t1	Gvermi7097.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 1635239..1636228 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:1635239..1636228+
coding sequence from alignment at ScGOVlb_24229:1635239..1636228+

mRNA sequence

>Gvermi7097.t1 ID=Gvermi7097.t1|Name=Gvermi7097.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=330bp
MVYKTSFDPSLRAELFFYQNIPAELLPYFPRLLGHFEREVENQTYLTIIL
EYISATNMSDILTSGRLSTQHIHDILHTLYRLHSTKNATNLNETVLMYNY
IPKVCERYAERKSLYLAHGVTKADVDILCSYLREHKPLQSCVIHGDPVFT
NVLYNGIDRSVTFLDMRGAQGKLLTTCGDVYYDLAKVLQSICGYDHMLKN
LPYEFTYHFFLLNAFFDQVSVLYPQVSRWGIVLVTTSLFISLLPLHEDAR
ARKLYALMGQKLLRWLHSWRGAVVAEGAFCDLAELTQQVLQNRQSTPAIS
VADMDVFNNILSFPVSLLEVAETIRDARQ*

spliced messenger RNA

>Gvermi7097.t1 ID=Gvermi7097.t1|Name=Gvermi7097.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=990bp|location=Sequence derived from alignment at ScGOVlb_24229:1635239..1636228+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTACAAAACGTCGTTCGATCCATCCCTAAGAGCTGAACTCTTCTT
CTACCAAAACATCCCCGCGGAGTTGCTTCCATACTTTCCCAGATTGCTTG
GTCACTTTGAAAGGGAAGTAGAAAATCAAACATACTTGACAATTATCTTG
GAATACATTTCTGCTACAAACATGTCCGATATTCTGACCAGTGGGCGCTT
GTCGACTCAGCACATTCATGATATACTTCATACGCTTTACAGACTGCACA
GCACCAAAAATGCAACAAACTTAAACGAAACTGTACTCATGTACAACTAT
ATCCCAAAGGTTTGCGAAAGATATGCGGAACGCAAGTCTCTTTATCTCGC
GCATGGGGTCACAAAGGCTGATGTTGACATTTTATGCTCCTACCTTCGTG
AGCACAAACCCCTTCAGTCCTGTGTGATTCATGGAGATCCTGTATTTACA
AACGTTCTATACAATGGCATTGATCGATCGGTGACTTTTCTCGATATGCG
CGGTGCTCAAGGGAAGCTGCTCACAACTTGCGGCGATGTGTATTACGACC
TGGCAAAAGTTTTGCAATCTATATGTGGATATGATCACATGCTCAAGAAC
TTACCCTACGAGTTCACGTATCATTTTTTCCTGCTCAACGCGTTCTTTGA
CCAGGTGTCCGTTTTGTACCCACAAGTGTCTCGCTGGGGTATCGTATTGG
TTACGACCAGCTTGTTCATCTCTCTGCTGCCGCTGCACGAAGATGCACGG
GCTCGCAAATTGTACGCATTAATGGGACAAAAGCTTCTGCGATGGCTCCA
CTCGTGGCGTGGGGCTGTGGTTGCTGAAGGAGCCTTCTGCGATCTAGCTG
AGTTGACGCAGCAGGTTCTGCAAAATCGTCAATCTACGCCCGCCATATCT
GTGGCCGACATGGATGTTTTTAATAATATCTTGAGTTTCCCAGTCTCTCT
CCTAGAAGTAGCAGAAACTATAAGGGATGCACGCCAATAA

protein sequence of Gvermi7097.t1

>Gvermi7097.t1 ID=Gvermi7097.t1|Name=Gvermi7097.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=330bp
MVYKTSFDPSLRAELFFYQNIPAELLPYFPRLLGHFEREVENQTYLTIIL
EYISATNMSDILTSGRLSTQHIHDILHTLYRLHSTKNATNLNETVLMYNY
IPKVCERYAERKSLYLAHGVTKADVDILCSYLREHKPLQSCVIHGDPVFT
NVLYNGIDRSVTFLDMRGAQGKLLTTCGDVYYDLAKVLQSICGYDHMLKN
LPYEFTYHFFLLNAFFDQVSVLYPQVSRWGIVLVTTSLFISLLPLHEDAR
ARKLYALMGQKLLRWLHSWRGAVVAEGAFCDLAELTQQVLQNRQSTPAIS
VADMDVFNNILSFPVSLLEVAETIRDARQ*

mRNA from alignment at ScGOVlb_24229:1635239..1636228+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7097.t1 ID=Gvermi7097.t1|Name=Gvermi7097.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=990bp|location=Sequence derived from alignment at ScGOVlb_24229:1635239..1636228+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCTACAAAACGTCGTTCGATCCATCCCTAAGAGCTGAACTCTTCTT
CTACCAAAACATCCCCGCGGAGTTGCTTCCATACTTTCCCAGATTGCTTG
GTCACTTTGAAAGGGAAGTAGAAAATCAAACATACTTGACAATTATCTTG
GAATACATTTCTGCTACAAACATGTCCGATATTCTGACCAGTGGGCGCTT
GTCGACTCAGCACATTCATGATATACTTCATACGCTTTACAGACTGCACA
GCACCAAAAATGCAACAAACTTAAACGAAACTGTACTCATGTACAACTAT
ATCCCAAAGGTTTGCGAAAGATATGCGGAACGCAAGTCTCTTTATCTCGC
GCATGGGGTCACAAAGGCTGATGTTGACATTTTATGCTCCTACCTTCGTG
AGCACAAACCCCTTCAGTCCTGTGTGATTCATGGAGATCCTGTATTTACA
AACGTTCTATACAATGGCATTGATCGATCGGTGACTTTTCTCGATATGCG
CGGTGCTCAAGGGAAGCTGCTCACAACTTGCGGCGATGTGTATTACGACC
TGGCAAAAGTTTTGCAATCTATATGTGGATATGATCACATGCTCAAGAAC
TTACCCTACGAGTTCACGTATCATTTTTTCCTGCTCAACGCGTTCTTTGA
CCAGGTGTCCGTTTTGTACCCACAAGTGTCTCGCTGGGGTATCGTATTGG
TTACGACCAGCTTGTTCATCTCTCTGCTGCCGCTGCACGAAGATGCACGG
GCTCGCAAATTGTACGCATTAATGGGACAAAAGCTTCTGCGATGGCTCCA
CTCGTGGCGTGGGGCTGTGGTTGCTGAAGGAGCCTTCTGCGATCTAGCTG
AGTTGACGCAGCAGGTTCTGCAAAATCGTCAATCTACGCCCGCCATATCT
GTGGCCGACATGGATGTTTTTAATAATATCTTGAGTTTCCCAGTCTCTCT
CCTAGAAGTAGCAGAAACTATAAGGGATGCACGCCAATAA

Coding sequence (CDS) from alignment at ScGOVlb_24229:1635239..1636228+

>Gvermi7097.t1 ID=Gvermi7097.t1|Name=Gvermi7097.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=990bp|location=Sequence derived from alignment at ScGOVlb_24229:1635239..1636228+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCTACAAAACGTCGTTCGATCCATCCCTAAGAGCTGAACTCTTCTT
CTACCAAAACATCCCCGCGGAGTTGCTTCCATACTTTCCCAGATTGCTTG
GTCACTTTGAAAGGGAAGTAGAAAATCAAACATACTTGACAATTATCTTG
GAATACATTTCTGCTACAAACATGTCCGATATTCTGACCAGTGGGCGCTT
GTCGACTCAGCACATTCATGATATACTTCATACGCTTTACAGACTGCACA
GCACCAAAAATGCAACAAACTTAAACGAAACTGTACTCATGTACAACTAT
ATCCCAAAGGTTTGCGAAAGATATGCGGAACGCAAGTCTCTTTATCTCGC
GCATGGGGTCACAAAGGCTGATGTTGACATTTTATGCTCCTACCTTCGTG
AGCACAAACCCCTTCAGTCCTGTGTGATTCATGGAGATCCTGTATTTACA
AACGTTCTATACAATGGCATTGATCGATCGGTGACTTTTCTCGATATGCG
CGGTGCTCAAGGGAAGCTGCTCACAACTTGCGGCGATGTGTATTACGACC
TGGCAAAAGTTTTGCAATCTATATGTGGATATGATCACATGCTCAAGAAC
TTACCCTACGAGTTCACGTATCATTTTTTCCTGCTCAACGCGTTCTTTGA
CCAGGTGTCCGTTTTGTACCCACAAGTGTCTCGCTGGGGTATCGTATTGG
TTACGACCAGCTTGTTCATCTCTCTGCTGCCGCTGCACGAAGATGCACGG
GCTCGCAAATTGTACGCATTAATGGGACAAAAGCTTCTGCGATGGCTCCA
CTCGTGGCGTGGGGCTGTGGTTGCTGAAGGAGCCTTCTGCGATCTAGCTG
AGTTGACGCAGCAGGTTCTGCAAAATCGTCAATCTACGCCCGCCATATCT
GTGGCCGACATGGATGTTTTTAATAATATCTTGAGTTTCCCAGTCTCTCT
CCTAGAAGTAGCAGAAACTATAAGGGATGCACGCCAATAA