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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005709275.1 |
| PFAMs | ABC1 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K08869 |
| Evalue | 1.7e-113 |
| EggNOG OGs | COG0661@1|root,KOG1235@2759|Eukaryota |
| Description | regulation of tocopherol cyclase activity |
| COG category | E |
| BRITE | ko00000,ko01001 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi6935.t1 ID=Gvermi6935.t1|Name=Gvermi6935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=646bp MLSALVAWTRFMVVYHVACALFQLLDHKAWLQRYKAFRGGAGLPGYGDML PRVLFNPTCIMLPTMVALFPLAAGRDGGAEPSAVTSWLALCTLAPLLHEV AFYMAHRFVLHSPRGVARFGHKLHHAPKAHCALSAMYVASFDFVLQIMLP YALPLLVLRRARMLGKAHASWLLALGSLGGLNEHSGYNFAPDVWSLDTRI HAMHHVFYSCSRHEWGAQKVYNLCVDLRGFYLKDGQFLGARSDIVPMAWC DSLRRLQDRVPPVPFSQIQRTVRHAYNVNKPSQIFASLDPVPLASATIAQ VHRGQMPNGTPIVLKVQYADQQHLCDMDLLNLKRLATYLQKHDMSFFDMH SVVAEFEAQIPAEFDFLREAEMMTVIRTNLRAAGIFDVVIPKVLPGLVSR RALTMTYVDGVRADNSLALNHWGVKPNHVLKAVGRAFGQMLLCDGLAHCD PHLGNLIVMRDGKVALIDFGQAKEIPDDLRKKLCAFYLALNSKNNLYILK TFSDLGIELDIRFEDIDEEFMRMIPHYANGMLDTAPLPPEIEINPFSNQS PLRQVPIKKFNPDLFMILRTMGLLRSLTETLNVETTDCWMSNIFKPFALR GLRRNGMSEQAKRRRSRAIRYDLTKGVPSPFDAQDDEVTDFCAML* back to topspliced messenger RNA >Gvermi6935.t1 ID=Gvermi6935.t1|Name=Gvermi6935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1938bp|location=Sequence derived from alignment at ScGOVlb_24229:688563..691965- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCTTTCCGCGCTCGTGGCGTGGACGCGGTTCATGGTGGTGTACCACGT CGCGTGCGCGCTGTTCCAGTTGCTCGACCACAAGGCGTGGCTGCAGCGGT ACAAGGCATTCCGCGGTGGCGCGGGGCTGCCCGGCTACGGCGACATGCTG CCGCGCGTGCTGTTTAACCCAACGTGTATCATGCTGCCAACCATGGTGGC GCTGTTCCCGCTGGCCGCGGGGCGCGACGGCGGCGCCGAGCCCAGCGCCG TCACGTCGTGGCTGGCGCTGTGCACGCTGGCGCCGCTGCTGCACGAGGTG GCGTTCTACATGGCGCACCGCTTCGTGTTGCACTCGCCGCGCGGCGTGGC GCGCTTCGGCCATAAGCTGCACCACGCGCCCAAGGCACACTGCGCGCTGT CGGCCATGTACGTGGCGTCGTTCGACTTTGTGCTACAGATCATGCTGCCA TACGCGCTGCCGCTGCTGGTGCTGCGGCGCGCGCGCATGCTGGGCAAGGC GCACGCCAGCTGGCTGCTGGCGCTCGGCTCGCTGGGCGGCCTGAACGAGC ACTCAGGCTACAACTTTGCGCCCGACGTGTGGTCGCTTGACACGCGCATC CATGCCATGCATCACGTCTTCTACTCGTGCTCCCGCCATGAGTGGGGCGC CCAAAAGGTCTACAACCTGTGCGTCGACCTGCGCGGCTTTTATCTCAAAG ATGGTCAATTTCTTGGCGCTCGAAGCGATATCGTCCCGATGGCGTGGTGC GACTCTCTTCGCCGTCTGCAGGACCGCGTGCCCCCCGTTCCATTTTCGCA AATTCAGCGCACAGTGCGCCATGCCTACAACGTCAACAAACCCAGTCAAA TCTTCGCCAGTCTCGACCCAGTGCCGCTCGCATCCGCCACAATTGCTCAG GTGCATCGCGGCCAGATGCCCAACGGTACCCCGATCGTTCTCAAGGTCCA GTATGCCGACCAGCAACATCTTTGCGACATGGACTTGCTCAATCTCAAGC GCCTCGCCACGTACCTTCAAAAGCATGACATGTCCTTCTTCGACATGCAC TCCGTCGTCGCAGAGTTTGAAGCCCAGATTCCTGCCGAGTTTGACTTCCT CCGGGAGGCCGAGATGATGACCGTCATCAGAACAAATCTTCGAGCCGCCG GCATTTTTGACGTCGTCATTCCCAAGGTTTTGCCGGGACTTGTCTCGCGT CGAGCCTTGACCATGACGTATGTCGACGGAGTGCGAGCGGACAACTCTCT CGCGCTCAATCACTGGGGAGTCAAACCGAACCATGTGCTAAAGGCCGTTG GTAGAGCATTTGGCCAGATGCTACTTTGTGACGGCCTTGCACACTGTGAT CCTCATCTTGGTAACTTGATTGTCATGAGGGATGGAAAAGTGGCACTCAT TGATTTTGGCCAGGCCAAGGAGATTCCCGATGATCTTCGGAAGAAGCTTT GTGCCTTCTACCTCGCCCTCAATTCCAAGAACAACCTCTACATCTTGAAA ACCTTTTCCGACCTCGGAATCGAGCTGGACATCCGCTTCGAAGACATTGA CGAGGAGTTTATGAGGATGATTCCGCATTACGCTAATGGAATGCTTGATA CGGCGCCTTTGCCGCCAGAAATCGAGATCAATCCATTTTCGAACCAAAGT CCGCTGAGACAAGTTCCGATCAAGAAGTTCAACCCGGATCTGTTCATGAT ACTGCGTACGATGGGCCTTTTGAGATCACTCACCGAGACTCTAAACGTGG AAACAACTGACTGTTGGATGTCCAATATCTTTAAACCGTTTGCGTTGCGC GGACTTCGTCGAAACGGCATGTCCGAGCAGGCGAAGAGGAGAAGGTCACG GGCAATAAGATATGATTTGACCAAGGGTGTGCCCTCTCCTTTTGACGCGC AAGATGACGAGGTCACAGATTTTTGTGCAATGTTATGA back to topprotein sequence of Gvermi6935.t1 >Gvermi6935.t1 ID=Gvermi6935.t1|Name=Gvermi6935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=646bp
MLSALVAWTRFMVVYHVACALFQLLDHKAWLQRYKAFRGGAGLPGYGDML PRVLFNPTCIMLPTMVALFPLAAGRDGGAEPSAVTSWLALCTLAPLLHEV AFYMAHRFVLHSPRGVARFGHKLHHAPKAHCALSAMYVASFDFVLQIMLP YALPLLVLRRARMLGKAHASWLLALGSLGGLNEHSGYNFAPDVWSLDTRI HAMHHVFYSCSRHEWGAQKVYNLCVDLRGFYLKDGQFLGARSDIVPMAWC DSLRRLQDRVPPVPFSQIQRTVRHAYNVNKPSQIFASLDPVPLASATIAQ VHRGQMPNGTPIVLKVQYADQQHLCDMDLLNLKRLATYLQKHDMSFFDMH SVVAEFEAQIPAEFDFLREAEMMTVIRTNLRAAGIFDVVIPKVLPGLVSR RALTMTYVDGVRADNSLALNHWGVKPNHVLKAVGRAFGQMLLCDGLAHCD PHLGNLIVMRDGKVALIDFGQAKEIPDDLRKKLCAFYLALNSKNNLYILK TFSDLGIELDIRFEDIDEEFMRMIPHYANGMLDTAPLPPEIEINPFSNQS PLRQVPIKKFNPDLFMILRTMGLLRSLTETLNVETTDCWMSNIFKPFALR GLRRNGMSEQAKRRRSRAIRYDLTKGVPSPFDAQDDEVTDFCAML* back to topmRNA from alignment at ScGOVlb_24229:688563..691965- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi6935.t1 ID=Gvermi6935.t1|Name=Gvermi6935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3403bp|location=Sequence derived from alignment at ScGOVlb_24229:688563..691965- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCTTTCCGCGCTCGTGGCGTGGACGCGGTTCATGGTGGTGTACCACGT
CGCGTGCGCGCTGTTCCAGTTGCTCGACCACAAGGCGTGGCTGCAGCGGT
ACAAGGCATTCCGCGGTGGCGCGGGGCTGCCCGGCTACGGCGACATGCTG
CCGCGCGTGCTGTTTAACCCAACGTGTATCATGCTGCCAACCATGGTGGC
GCTGTTCCCGCTGGCCGCGGGGCGCGACGGCGGCGCCGAGCCCAGCGCCG
TCACGTCGTGGCTGGCGCTGTGCACGCTGGCGCCGCTGCTGCACGAGGTG
GCGTTCTACATGGCGCACCGCTTCGTGTTGCACTCGCCGCGCGGCGTGGC
GCGCTTCGGCCATAAGCTGCACCACGCGCCCAAGGCACACTGCGCGCTGT
CGGCCATGTACGTGGCGTCGTTCGACTTTGTGCTACAGATCATGCTGCCA
TACGCGCTGCCGCTGCTGGTGCTGCGGCGCGCGCGCATGCTGGGCAAGGC
GCACGCCAGCTGGCTGCTGGCGCTCGGCTCGCTGGGCGGCCTGAACGAGC
ACTCAGGCTACAACTTTGCGCCCGACGTGTGGTCGCTTGACACGCGCATC
CATGCCATGCATCACGTCTTCTACTCGTGCTCGTTCGCCGATGGCGTTGG
CACGCCCGGCCTGCTGGACCACGTGCTGCACTCCGCGTGCGGCGGCGTGG
GCGCCCCGGCGCTCGCCGCGCGCAAACTCGTGGCGCGCATGGCCCCGAGC
CCCGCCGCGCCCGCGCGTTTCCGGACGACGGCTGTGCCGTAGTGCCGCAT
TGTACGTACTGGCGGCGCGAGCGCCTTTCCGAGATGCGCACCCGATTTCA
CACTCTCGTGAACAGAGGGCGTCCGGCACTCGTGGACCCTCTGAAGCCCG
CCGCGCCGAGCGCCCGCAGCTTCCCGTCTCACGTTGCGCCTTTCGCCTTT
CGCTCCGTGCGCCGCCTTTCGCTCCGCGCGCCGCTTTTCGCTCCGCGCGC
CGCCTTTCGCTCCGCGCGCCGCCTTTCGCTCCGTGTGGGCGCGTTTCGTT
CCACAGCACGGCGCGCGCCGTCGCCACGTGGCCGTGCGCCGTGCAAATGT
GGCCCATTTCCACGGCGCCAATCAATGGCGCGTGCCATTCCCAAGCTGCC
CCCAGCGCGGCGGCGCGGCGCGTGCCACGCGTGCGCGCTGTCGCACGCGC
CAACGCCCAAGCGCACGCGCCGCCGCCCCCACAGCCGCACGCCGCGCTCG
CGCTCCCGCGCGACTCCGTCACCGCCGCGCCCCATGGCCGCCTTCGCGCT
GCGCGCCCGCGCCGCGCCGCGCTGCGCGGCGCTGCCGCCCGTCTGCGTGC
GCGCGCTGCTGCGCGCCGCCGCGCCGCCCGCCGCCGCGCGCCTGCCCACC
GCGCTGCTGGGCGCGCCCGCGCTGGCCGTCGCGCAGGCGCTGCTGGGGCG
CCGCCGCTGGAATGTCCTGCAGCTGCTCATCGTCGCGTCGGCGGCGCGCC
TGCCCGTCGTCGCGCTGCTGGCCCCCCTGCTCCCGCCTCTCTGCCTTGCC
GCCGCCTACGCCCTCCTCTGCCGCGCCGTCGCCCCGGCGCACGCCCGCAG
CTTGCGCTTCTGGCGGAGGGTGCTGCCCATCTACGTCGCCTACAAGAAGA
CCCAGCTGTCGCTCGCCGTGCAGAACGCCTCCCCCGAGCACCGCGCCAAG
GCGTGGAACAGCCGCCATGAGTGGGGCGCCCAAAAGGTGCGTCTCCTCCC
CCCCCCCCCACCACACGTTCCAACCTGCGCCCCCGACCGCCACTCACTCA
CCCCCGCCGCTCCCTATCGCCCTCCGTAGGTCTACAACCTGTGCGTCGAC
CTGCGCGGCTTTTATCTCAAAGATGGTACGTTGCCCGCCGCTCCGCACAC
TAATGTGTCGCCTGCCGCCCACGAGCGCACGCAGTCGTGCTGACGTCGCC
GCCACGCAGGTCAATTTCTTGGCGCTCGAAGCGATATCGTCCCGATGGCG
TGGTGCGACTCTCTTCGCCGTCTGCAGGACCGCGTGCCCCCCGTTCCATT
TTCGCAAATTCAGCGCACAGTGCGCCATGCCTACAACGTCAACAAACCCA
GTCAAATCTTCGCCAGTCTCGACCCAGTGCCGCTCGCATCCGCCACAATT
GCTCAGGTGCATCGCGGCCAGATGCCCAACGGTACCCCGATCGTTCTCAA
GGTCCAGTATGCCGACCAGCAACATCTTTGCGACATGGACTTGCTCAATC
TCAAGCGCCTCGCCACGTACCTTCAAAAGCATGACATGTCCTTCTTCGAC
ATGCACTCCGTCGTCGCAGAGTTTGAAGCCCAGATTCCTGCCGAGTTTGA
CTTCCTCCGGGAGGCCGAGATGATGACCGTCATCAGAACAAATCTTCGAG
CCGCCGGCATTTTTGACGTCGTCATTCCCAAGGTTTTGCCGGGACTTGTC
TCGCGTCGAGCCTTGACCATGACGTATGTCGACGGAGTGCGAGCGGACAA
CTCTCTCGCGCTCAATCACTGGGGAGTCAAACCGAACCATGTGCTAAAGG
CCGTTGGTAGAGCATTTGGCCAGATGCTACTTTGTGACGGCCTTGCACAC
TGTGATCGTACGTGTGTGCCCATGTCTTGCGTCACTTTTCCCAAATTCCG
AGTACCGCATGCTAACCGCTGTCGTCTTGTCTTCTGCCTCTCGTTACCTC
TGCATCCGTCGACGATGTCCTGGAAAGCTCATCTTGGTAACTGTAAGTGT
CGCCCACAATGTTGCCCATGCGTCACCATGCGAAACATCTCACTAACTAT
GCCCGTCTGGACCTGACCTGCTCGTCCCCAGTGATTGTCATGAGGGATGG
AAAAGTGGCACTCATTGATTTTGGCCAGGCCAAGGAGATTCCCGATGATC
TTCGGAAGAAGCTTTGTGCCTTCTACCTCGCCCTCAATTCCAAGAACAAC
CTCTACATCTTGAAAACCTTTTCCGACCTCGGAATCGAGCTGGACATCCG
CTTCGAAGACATTGACGAGGAGTTTATGAGGATGATTCCGCATTACGCTA
ATGGAATGCTTGATACGGCGCCTTTGCCGCCAGAAATCGAGATCAATCCA
TTTTCGAACCAAAGTCCGCTGAGACAAGTTCCGATCAAGAAGTTCAACCC
GGATCTGTTCATGATACTGCGTACGATGGGCCTTTTGAGATCACTCACCG
AGACTCTAAACGTGGAAACAACTGACTGTTGGATGTCCAATATCTTTAAA
CCGTTTGCGTTGCGCGGACTTCGTCGAAACGGCATGTCCGAGCAGGCGAA
GAGGAGAAGGTCACGGGCAATAAGATATGATTTGACCAAGGGTGTGCCCT
CTCCTTTTGACGCGCAAGATGACGAGGTCACAGATTTTTGTGCAATGTTA
TGA back to topCoding sequence (CDS) from alignment at ScGOVlb_24229:688563..691965- >Gvermi6935.t1 ID=Gvermi6935.t1|Name=Gvermi6935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1938bp|location=Sequence derived from alignment at ScGOVlb_24229:688563..691965- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCTTTCCGCGCTCGTGGCGTGGACGCGGTTCATGGTGGTGTACCACGT CGCGTGCGCGCTGTTCCAGTTGCTCGACCACAAGGCGTGGCTGCAGCGGT ACAAGGCATTCCGCGGTGGCGCGGGGCTGCCCGGCTACGGCGACATGCTG CCGCGCGTGCTGTTTAACCCAACGTGTATCATGCTGCCAACCATGGTGGC GCTGTTCCCGCTGGCCGCGGGGCGCGACGGCGGCGCCGAGCCCAGCGCCG TCACGTCGTGGCTGGCGCTGTGCACGCTGGCGCCGCTGCTGCACGAGGTG GCGTTCTACATGGCGCACCGCTTCGTGTTGCACTCGCCGCGCGGCGTGGC GCGCTTCGGCCATAAGCTGCACCACGCGCCCAAGGCACACTGCGCGCTGT CGGCCATGTACGTGGCGTCGTTCGACTTTGTGCTACAGATCATGCTGCCA TACGCGCTGCCGCTGCTGGTGCTGCGGCGCGCGCGCATGCTGGGCAAGGC GCACGCCAGCTGGCTGCTGGCGCTCGGCTCGCTGGGCGGCCTGAACGAGC ACTCAGGCTACAACTTTGCGCCCGACGTGTGGTCGCTTGACACGCGCATC CATGCCATGCATCACGTCTTCTACTCGTGCTCCCGCCATGAGTGGGGCGC CCAAAAGGTCTACAACCTGTGCGTCGACCTGCGCGGCTTTTATCTCAAAG ATGGTCAATTTCTTGGCGCTCGAAGCGATATCGTCCCGATGGCGTGGTGC GACTCTCTTCGCCGTCTGCAGGACCGCGTGCCCCCCGTTCCATTTTCGCA AATTCAGCGCACAGTGCGCCATGCCTACAACGTCAACAAACCCAGTCAAA TCTTCGCCAGTCTCGACCCAGTGCCGCTCGCATCCGCCACAATTGCTCAG GTGCATCGCGGCCAGATGCCCAACGGTACCCCGATCGTTCTCAAGGTCCA GTATGCCGACCAGCAACATCTTTGCGACATGGACTTGCTCAATCTCAAGC GCCTCGCCACGTACCTTCAAAAGCATGACATGTCCTTCTTCGACATGCAC TCCGTCGTCGCAGAGTTTGAAGCCCAGATTCCTGCCGAGTTTGACTTCCT CCGGGAGGCCGAGATGATGACCGTCATCAGAACAAATCTTCGAGCCGCCG GCATTTTTGACGTCGTCATTCCCAAGGTTTTGCCGGGACTTGTCTCGCGT CGAGCCTTGACCATGACGTATGTCGACGGAGTGCGAGCGGACAACTCTCT CGCGCTCAATCACTGGGGAGTCAAACCGAACCATGTGCTAAAGGCCGTTG GTAGAGCATTTGGCCAGATGCTACTTTGTGACGGCCTTGCACACTGTGAT CCTCATCTTGGTAACTTGATTGTCATGAGGGATGGAAAAGTGGCACTCAT TGATTTTGGCCAGGCCAAGGAGATTCCCGATGATCTTCGGAAGAAGCTTT GTGCCTTCTACCTCGCCCTCAATTCCAAGAACAACCTCTACATCTTGAAA ACCTTTTCCGACCTCGGAATCGAGCTGGACATCCGCTTCGAAGACATTGA CGAGGAGTTTATGAGGATGATTCCGCATTACGCTAATGGAATGCTTGATA CGGCGCCTTTGCCGCCAGAAATCGAGATCAATCCATTTTCGAACCAAAGT CCGCTGAGACAAGTTCCGATCAAGAAGTTCAACCCGGATCTGTTCATGAT ACTGCGTACGATGGGCCTTTTGAGATCACTCACCGAGACTCTAAACGTGG AAACAACTGACTGTTGGATGTCCAATATCTTTAAACCGTTTGCGTTGCGC GGACTTCGTCGAAACGGCATGTCCGAGCAGGCGAAGAGGAGAAGGTCACG GGCAATAAGATATGATTTGACCAAGGGTGTGCCCTCTCCTTTTGACGCGC AAGATGACGAGGTCACAGATTTTTGTGCAATGTTATGA back to top
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