Gvermi7041.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7041.t1
Unique NameGvermi7041.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length619
Homology
BLAST of Gvermi7041.t1 vs. uniprot
Match: A0A2V3IED5_9FLOR (Hint domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IED5_9FLOR)

HSP 1 Score: 721 bits (1860), Expect = 2.040e-253
Identity = 355/591 (60.07%), Postives = 468/591 (79.19%), Query Frame = 0
Query:    8 IALLIITVLCLALQSTAEISYKHCEGPADIGNQGAKGFFFNVCVQDEHFNRRTHNWVFTKSIVKNTRFSECAFLFPTRRDDPLDGSTWNNVSFKACTFGAEKGKRKQTAMFTHTTMHNVVFENCTFENSLDLVFEKFALDXXXXXXXXXXXXLQFSKGDVKRLIIAHSTLGSLSPSGTERDGGDILMSDMSLSRALIHNTVGSGHLRLQSASVEDLELQSSRIGGVACHEEV-EADKLPKKKISLRTAMFRNVAFTDGFYCDRTEITGLDLLDVQVRNFIDLSKSDLVNLVVRNVTSYAEDVCSTFSLRDAIVDGKTLADINTTKIILAGAKFLEGIRFINVSIASREIDLSGTIFNQEVIDKECCTVSCLETGCMCDVSHESLICPRGNSTVNVNADDSCFPALSVVKIKTASGRIHSIRLDGLEFGDAVIHSSLSEASDVFFFGHKSSSQWALYKRVVAKSFESGREKPYTLHISESHLLPVAGLGEVPARRLSVGDKLFTEQGGLATVSAIEDHVMLGMYSPITISGNISVDGIIVSAYTDAIPKAVAMALLSPLRALYFHSNFGRYLLTKANWLHERSAAGLVRKAK 597
            + L+++ V CL  ++ AEISYKHC GPAD G Q A+G FFNVCVQ+EHF   T  W F+KS+++NT+F+ C F FPT R+  LD +TWNNV+FKACTFG ++G +KQ A F+H TM NV+FE+C F +S DL F      XXXXXXXXX   ++F+KGDV R+ I+HS LGS + +GTE++GG++LMS+MSL R LIH+T+GSG +R+QSASV++LE+ SSRIG ++CHE+V   D   KK+I+L  ++ +NV+FTDGFYCD+TEITGLDLLD++VRN +DLSKSD+VNLVV+N+TSYA+DVCS+FSLRDA V+G TL+D+ TTKI  AGAKF+EGI F+NVSI++++IDLSGTIF+QE+I+KECCT+SCL+TGCMCD+SHE+L+CP+GN++ NVNA DSCFPA SVVK     G      ++ + FGDA+ +    + SDV+FFGHK+SSQW +Y+RV A + E   E+ Y L+IS +H+LPVAG G++PAR + VGDKLFT++G LATVS +ED VM GMYSPIT SG++SVDGIIVSAYT+ +P+  A A+L+P RALY +S +GR +L + NWLHERSAA  VR  K
Sbjct:   52 VLLIVVVVFCLVDRAEAEISYKHCLGPADTGGQAAQGRFFNVCVQEEHFENLTREWDFSKSVIRNTQFTGCTFHFPTSRNQALDDTTWNNVTFKACTFGGKQGTQKQIASFSHATMQNVLFEDCVFSSSFDLSFXXXXXXXXXXXXXXXRNEIRFAKGDVSRMTISHSILGSPTANGTEKNGGNMLMSEMSLHRILIHSTIGSGSIRIQSASVDELEVISSRIGALSCHEQVTNKDGRAKKRITLDRSLIKNVSFTDGFYCDQTEITGLDLLDIRVRNHLDLSKSDIVNLVVKNITSYADDVCSSFSLRDATVEGDTLSDVATTKITFAGAKFMEGITFVNVSISNKDIDLSGTIFSQEIINKECCTLSCLKTGCMCDISHEALVCPKGNASTNVNAKDSCFPARSVVKTVNPLGSCVYKTMEEIHFGDALFYKFGVDTSDVYFFGHKTSSQWGVYRRVTATTNELENERTYVLYISHAHILPVAGRGKIPARMVMVGDKLFTDRGDLATVSVLEDQVMRGMYSPITTSGSLSVDGIIVSAYTEILPERTAAAMLAPFRALYDNSRWGRVILRRMNWLHERSAADYVRMFK 642          
BLAST of Gvermi7041.t1 vs. uniprot
Match: R7QIV5_CHOCR (HintN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIV5_CHOCR)

HSP 1 Score: 114 bits (285), Expect = 2.610e-24
Identity = 103/344 (29.94%), Postives = 159/344 (46.22%), Query Frame = 0
Query:  252 RTAMFRNVAFTDGFYCDRTEITGLDLLDVQVRNFIDLSKSDLVNLVVRNVTSYAEDVCSTFSLRDAIVDGKTLADINTTKIILAGAKFLEGIRFINVSIASREIDLSGTIFNQEVIDKECCTVSCLETGCMCDVSHESLICPRGNSTVNVNADDSCFPALSVVKIKTASGRIHSIRLDGLEFGDAVIHSSLSEASDVFFFGHKSSSQWALYKRVVAKSFESGREKPYTLHISESHLLPVAGLGEVPARRLSVGDKLFTEQGGLAT-VSAIEDHVMLGMYSPITISGNISVDGIIVSAYTDAIPKAVAMALLSPLRALYFHSNFGRYLLTKANWLHERSAAGLVR 594
            R A F N    D  Y D   +      + + +  +D S + +   V+ N T     +       DAI +   + + N T+   AGA+F E                      QE ID  CC+  C+   CMC+VS  S  CP G S VNV+A  +CFPA + V      G +  +R++ L++ D V     S  SDVFFFGH+S    + +  +      +G + P  L +S  H L V G     AR +  GD+L    G     V  ++   + G+Y+P ++ G++ VDG++VS+YTD +   +A  LL PLR LY +      ++++   LH+ S A + R
Sbjct:    8 RNADFSNSQILD-LYWDEVNMES----NTKEKLVLDFSNTYINRRVLANTT-----IVGKADFTDAIFETVYIENFNATQPRFAGAQFRE----------------------QEFIDGYCCSRVCISLDCMCNVSQPSGECPAGRSNVNVSAPLTCFPADATVS--RPDGLV--VRMEDLQYADKVAVGDGSH-SDVFFFGHRSPHPVSEFVSI----HHAGSQTP--LRLSPGHYLYVDGKLRT-ARSVRPGDRLRGADGEYDLFVLNVKRQQLRGLYAPTSVHGDLVVDGVMVSSYTDVMHPGLAHKLLHPLRLLYRYGLDA--VVSRVTALHQTSFAHVPR 305          
BLAST of Gvermi7041.t1 vs. uniprot
Match: A0A7S0G7J6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G7J6_9RHOD)

HSP 1 Score: 72.8 bits (177), Expect = 3.200e-10
Identity = 52/163 (31.90%), Postives = 88/163 (53.99%), Query Frame = 0
Query:  406 SCFPALSVVKIKTASGRIHSIRLDGLEFGDAVIHSSLSEASDVFFFGHKSSSQWALYKRVVAKSFESGREKPYTLHISESHLLPVAGLGEVPARRLSVGDKLFTEQGGLATVSAIEDHVMLGMYSPITISGNISVDGIIVSAYTDAIPKAVAMALLSPLRALY 568
            +CFP  ++V ++  + +     +D LE GD V+ +   E SDVF F H+ S+++  + R+   +          + +S +H L V G   V A+ + VGD++    G L  V+A     + G+Y+P T+SG+I V+GI+ S YT  +  ++A  LL   +ALY
Sbjct:  147 ACFPGNALVALEDGTTKT----MDALEAGDRVLGAH-GEFSDVFGFSHRDSTEFGKFVRLQTSTD--------FVELSPNHYL-VVGDNLVAAKDVKVGDQISLANGDLTAVTAAHRVQVKGVYNPHTMSGDIVVNGILTSTYTQTVNPSLAKLLLLFPKALY 295          
BLAST of Gvermi7041.t1 vs. uniprot
Match: A0A7S3EN80_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EN80_9RHOD)

HSP 1 Score: 73.9 bits (180), Expect = 3.930e-10
Identity = 54/164 (32.93%), Postives = 89/164 (54.27%), Query Frame = 0
Query:  406 SCFPALSVVKIKTASGRIHSIRLDGLEFGDAVIHSSLSEASDVFFFGHKSSSQWALYKRV-VAKSFESGREKPYTLHISESHLLPVAGLGEVPARRLSVGDKLFTEQGGLATVSAIEDHVMLGMYSPITISGNISVDGIIVSAYTDAIPKAVAMALLSPLRALY 568
            +CFP  +VV ++  + +     +D LE GD V+     E SDVF F H+ S+++  + R+ ++  F         + +S +H L V G   + A+ + VGD++    G L  V+AI    + G+Y+P TISG+I V+G++ S YT  +   +A  LL   +ALY
Sbjct:  371 ACFPGNAVVTLEDGTTK----PMDRLEAGDTVLGGD-GEFSDVFGFSHRDSTEFGKFIRLEMSADF---------IELSPNHYLAV-GDKLIAAKDVKVGDQISLANGDLTAVTAIHRVQLKGVYNPHTISGDIVVNGVLASTYTQTVNPLLAKLLLLFPKALY 519          
BLAST of Gvermi7041.t1 vs. uniprot
Match: UPI001E1DBAAD (desert hedgehog protein B-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DBAAD)

HSP 1 Score: 67.4 bits (163), Expect = 2.100e-9
Identity = 54/172 (31.40%), Postives = 88/172 (51.16%), Query Frame = 0
Query:  428 LDGLEFGDAVIHSSLSEASDVFFFGHKSSSQWALYKRVVAKSFESGREKPYTLHISESHLLPVAGLGEVPARRLSVGDKLF-TEQGGLATVSAIEDHVMLGMYSPITISGNISVDGIIVSAYTDAIPKAVAMALLSPLRALYFHSNFGRYLLTKANWLHERSAAGLVRKAKV 598
            +D L++ D V      + SDVFFFGH++S+    + R+     ES  +    L+IS  H L V G     A  + +GD L   +      V AI      G+++P ++ G++ VDG++VS+YTD +    A  LL P+R L+ +S F   +   ++ +H  S A + R+  V
Sbjct:    1 MDQLQYADRVAVGG-GDHSDVFFFGHRNSNARTAFVRI-----ESTSKSDQPLYISPGHYLYVNGR-LATAGTVRIGDILRGPDNADNIAVLAISREDRSGIFAPASLHGDLLVDGVVVSSYTDVMHPVSAHRLLEPIRWLH-NSPFRSLVQRASSIMHADSYAWVARRLGV 164          
BLAST of Gvermi7041.t1 vs. uniprot
Match: A0A1X6NWZ3_PORUM (Hint domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWZ3_PORUM)

HSP 1 Score: 70.5 bits (171), Expect = 3.130e-9
Identity = 58/166 (34.94%), Postives = 82/166 (49.40%), Query Frame = 0
Query:  406 SCFPALSVVKIKTASGRIHSIRLDGLEFGDAVIHSSLSEASDVFFFGHKSSSQWALYKRVV-AKSFESGREKPYTLHISESHLLPVAGLGEVPARRLSVGDKLFTEQGG--LATVSAIEDHVMLGMYSPITISGNISVDGIIVSAYTDAIPKAVAMALLSPLRALY 568
            SCFPA + V++   S    +  L  L  G  V        SDVF   H+ +     Y R+       +       L +S  HL+   G+  VPAR + VGD L T   G  ++ V A+   V +G  +P T+ G++ VDG+ VS YTDA+  +VA ALL+P RA Y
Sbjct:  223 SCFPAAATVELADGS----TAALGALPAGSTV-RVGAGAHSDVFGCSHRQTGGRHAYVRLTHGDGAAAAASTTRDLLLSPGHLVYANGV-LVPARDVVVGDALATPGTGTGVSVVXAVGTAVAVGKVNPHTLHGDVVVDGVRVSTYTDALHPSVAHALLAPARAAY 382          
BLAST of Gvermi7041.t1 vs. uniprot
Match: A0A2V3J669_9FLOR (Indian hedgehog B protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J669_9FLOR)

HSP 1 Score: 68.9 bits (167), Expect = 1.190e-8
Identity = 49/177 (27.68%), Postives = 93/177 (52.54%), Query Frame = 0
Query:  401 VNADDSCFPALSVVKIKTASGRIHSIRLDGLEFGDAVIHSSLSEASDVFFFGHKSSSQWALYKRVVAKSFESGREKPYTLHISESHLLPVAGLGEVPARRLSVGDKLFTEQGGLATVSAIEDHVMLGMYSPITISGNISVDGIIVSAYTDAIPKAVAMALLSPLRALYFHSNFGRYL 577
            + ++D CFP  ++V+++      H I +  +  G  V+ +     S VF F H+  +       V+++  +   E    L ++ SH + +     VPA+  + G ++    G ++ ++A+      G+Y+P T+ G+I VD I VS+YTDA+   +A ++L+PLRA++    FG Y+
Sbjct:  275 LKSEDKCFPGSAMVQLENG----HRIPMSDVRIGHRVLVAP-ETFSTVFMFTHRVDN-------VLSEFIQIRTETGEILSLTASHYIYLDS-SLVPAKYATTGQQVQLSDGRVSFITAVSTVRDSGLYNPQTLHGDIVVDNIRVSSYTDAVKPHIAHSMLAPLRAVF--DRFGFYV 436          
BLAST of Gvermi7041.t1 vs. uniprot
Match: A0A2V3IGL4_9FLOR (Sonic hedgehog protein A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGL4_9FLOR)

HSP 1 Score: 67.8 bits (164), Expect = 2.880e-8
Identity = 53/174 (30.46%), Postives = 91/174 (52.30%), Query Frame = 0
Query:  397 STVNVNADDSCFPALSVVKIKTASGRIHSIRLDGLEFGDAVIHSSLSEASDVFFFGHKSSSQWALYKRVVAKSFESGREKPYTLHISESHLLPVAG-LGEVPARRLSVGDKLFTEQGGLATVSAIEDHVMLGMYSPITISGNISVDGIIVSAYTDAIPKA-VAMALLSPLRALY 568
            S V+  +  +CFPA   V +  + GR+  +R++ ++  D V+       S +  F H++S   A + R+  +   S       L +S  H++ V   +    A+ + VGD L   + G + V+ +E  V  G+++P  + G + V GI+VSAYT A+P +  A ALL+PLR +Y
Sbjct:  303 SFVDTASQRACFPAGEQVWL--SDGRV--VRMESVKLHDEVLVDDSGGGSAIMSFTHRNSIVLARFVRIHTQHKRS-------LTLSGGHIVLVGREMKAKTAQEVRVGDSLTDVEHGASAVTNVEWVVRRGLFNPQPVQGRLVVHGIVVSAYTSALPNSGCAHALLTPLRFVY 465          
BLAST of Gvermi7041.t1 vs. uniprot
Match: A0A2V3IUJ2_9FLOR (Kelch-like protein 22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUJ2_9FLOR)

HSP 1 Score: 66.2 bits (160), Expect = 1.380e-7
Identity = 51/164 (31.10%), Postives = 90/164 (54.88%), Query Frame = 0
Query:  406 SCFPALSVVKIKTASGRIHSIRLDGLEFGDAVIHSSLSEASDVFFFGHKSSSQWALYKRVVAKSFESGREKPYTLHISESHLLPVAGLGEVPARRLSVGDKL-FTEQGGLATVSAIEDHVMLGMYSPITISGNISVDGIIVSAYTDAIPKAVAMALLSPLRALY 568
            SCFP+ ++V+++  S +  ++RL  +  GD V  +   E S+VFFF HK  S+ + + R+ +     G      L +S  HL+ V G  E  A  + VGD +        ATV+ +     +G+++P T+ G+I V+G++ S +T+++   +A  LL+P RA +
Sbjct:  701 SCFPSDAMVELEDGSTK--AMRL--VRIGDRVKVAHPKEFSEVFFFSHKHKSKKSDFVRIESSLDGVG------LTVSPGHLVYVNGKLE-RASAVRVGDSISVAHDARSATVTDVSRVRGVGLHNPHTLHGDIVVNGVVASTFTNSVHPGLAKVLLAPFRAAF 853          
BLAST of Gvermi7041.t1 vs. uniprot
Match: R7Q8Q4_CHOCR (HintN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8Q4_CHOCR)

HSP 1 Score: 64.3 bits (155), Expect = 2.100e-7
Identity = 53/169 (31.36%), Postives = 85/169 (50.30%), Query Frame = 0
Query:  400 NVNADDSCFPALSVVKIKTASGRIHSIRLDGLEFGDAVIHSSLSEASDVFFFGHKSSSQWALYKRVVAKSFESGREKPYTLHISESHLLPVAGLGEVPARRLSVGDKLFTEQGGLATVSAIEDHVMLGMYSPITISGNISVDGIIVSAYTDAIPKAVAMALLSPLRALY 568
            N+     CFPA + V ++  SG++ +  +D +  GD V+ +     SDVF + H +S     Y   +A   + G      L  +  H +   G   +  R +  G  + T +G  ATV+A+      G+Y+P T  G+I V+G+I + YTDA+    A ALL+P+RA Y
Sbjct:  171 NIGDRVECFPADATVTLQ--SGQVKT--MDTVRIGDRVLVAD-GTYSDVFAWTHHTSKSALSY---IAVETDLGNR----LVTTAGHYVHADG-ATLQMRDVRKGMVMRTAEGADATVTAVRTVKAKGLYNPQTTHGDIVVNGLIATTYTDAVQPGAAHALLAPVRAAY 326          
The following BLAST results are available for this feature:
BLAST of Gvermi7041.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A2V3IED5_9FLOR2.040e-25360.07Hint domain-containing protein n=1 Tax=Gracilariop... [more]
R7QIV5_CHOCR2.610e-2429.94HintN domain-containing protein n=1 Tax=Chondrus c... [more]
A0A7S0G7J6_9RHOD3.200e-1031.90Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3EN80_9RHOD3.930e-1032.93Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
UPI001E1DBAAD2.100e-931.40desert hedgehog protein B-like n=1 Tax=Mercenaria ... [more]
A0A1X6NWZ3_PORUM3.130e-934.94Hint domain-containing protein n=1 Tax=Porphyra um... [more]
A0A2V3J669_9FLOR1.190e-827.68Indian hedgehog B protein n=1 Tax=Gracilariopsis c... [more]
A0A2V3IGL4_9FLOR2.880e-830.46Sonic hedgehog protein A n=1 Tax=Gracilariopsis ch... [more]
A0A2V3IUJ2_9FLOR1.380e-731.10Kelch-like protein 22 n=1 Tax=Gracilariopsis chord... [more]
R7Q8Q4_CHOCR2.100e-731.36HintN domain-containing protein n=1 Tax=Chondrus c... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001767Hedgehog protein, Hint domainPFAMPF01079Hintcoord: 405..571
e-value: 3.4E-10
score: 39.8
NoneNo IPR availableGENE3D2.170.16.10Hedgehog/Intein (Hint) domaincoord: 407..549
e-value: 3.8E-16
score: 61.8
NoneNo IPR availableGENE3D2.160.20.80coord: 55..242
e-value: 8.2E-8
score: 33.3
NoneNo IPR availablePANTHERPTHR11889HEDGEHOGcoord: 403..581
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..618
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 115..208
IPR036844Hint domain superfamilySUPERFAMILY51294Hedgehog/intein (Hint) domaincoord: 425..548

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1236589..1238445 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7041.t1Gvermi7041.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 1236589..1238445 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7041.t1 ID=Gvermi7041.t1|Name=Gvermi7041.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=619bp
MARGLLHIALLIITVLCLALQSTAEISYKHCEGPADIGNQGAKGFFFNVC
VQDEHFNRRTHNWVFTKSIVKNTRFSECAFLFPTRRDDPLDGSTWNNVSF
KACTFGAEKGKRKQTAMFTHTTMHNVVFENCTFENSLDLVFEKFALDSVT
FKNCTFRNQLQFSKGDVKRLIIAHSTLGSLSPSGTERDGGDILMSDMSLS
RALIHNTVGSGHLRLQSASVEDLELQSSRIGGVACHEEVEADKLPKKKIS
LRTAMFRNVAFTDGFYCDRTEITGLDLLDVQVRNFIDLSKSDLVNLVVRN
VTSYAEDVCSTFSLRDAIVDGKTLADINTTKIILAGAKFLEGIRFINVSI
ASREIDLSGTIFNQEVIDKECCTVSCLETGCMCDVSHESLICPRGNSTVN
VNADDSCFPALSVVKIKTASGRIHSIRLDGLEFGDAVIHSSLSEASDVFF
FGHKSSSQWALYKRVVAKSFESGREKPYTLHISESHLLPVAGLGEVPARR
LSVGDKLFTEQGGLATVSAIEDHVMLGMYSPITISGNISVDGIIVSAYTD
AIPKAVAMALLSPLRALYFHSNFGRYLLTKANWLHERSAAGLVRKAKVMM
KTAPHSLLSVAYLFLRSI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001767Hedgehog_Hint
IPR011050Pectin_lyase_fold/virulence
IPR036844Hint_dom_sf