Gvermi7041.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7041.t1
Unique Name	Gvermi7041.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	619

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:1236589..1238445 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ13332
PFAMs	Ground-like,Hint,Kelch_4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06224,ko:K11990,ko:K16669
KEGG Pathway	ko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG Module	M00678
GOs	GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue	3.4e-09
EggNOG OGs	KOG3638@1\|root,KOG3638@2759\|Eukaryota
Description	intein-mediated protein splicing
COG category	M
BRITE	ko00000,ko00001,ko00002,ko00536,ko01002,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7041	Gvermi7041	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 1236589..1238445 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7041.t1.start1	Gvermi7041.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 1236589..1236591 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7041.t1.CDS1	Gvermi7041.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 1236589..1238445 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7041.t1.exon1	Gvermi7041.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 1236589..1238445 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7041.t1.stop1	Gvermi7041.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 1238443..1238445 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7041.t1	Gvermi7041.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 1236589..1238445 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:1236589..1238445+
coding sequence from alignment at ScGOVlb_24229:1236589..1238445+

mRNA sequence

>Gvermi7041.t1 ID=Gvermi7041.t1|Name=Gvermi7041.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=619bp
MARGLLHIALLIITVLCLALQSTAEISYKHCEGPADIGNQGAKGFFFNVC
VQDEHFNRRTHNWVFTKSIVKNTRFSECAFLFPTRRDDPLDGSTWNNVSF
KACTFGAEKGKRKQTAMFTHTTMHNVVFENCTFENSLDLVFEKFALDSVT
FKNCTFRNQLQFSKGDVKRLIIAHSTLGSLSPSGTERDGGDILMSDMSLS
RALIHNTVGSGHLRLQSASVEDLELQSSRIGGVACHEEVEADKLPKKKIS
LRTAMFRNVAFTDGFYCDRTEITGLDLLDVQVRNFIDLSKSDLVNLVVRN
VTSYAEDVCSTFSLRDAIVDGKTLADINTTKIILAGAKFLEGIRFINVSI
ASREIDLSGTIFNQEVIDKECCTVSCLETGCMCDVSHESLICPRGNSTVN
VNADDSCFPALSVVKIKTASGRIHSIRLDGLEFGDAVIHSSLSEASDVFF
FGHKSSSQWALYKRVVAKSFESGREKPYTLHISESHLLPVAGLGEVPARR
LSVGDKLFTEQGGLATVSAIEDHVMLGMYSPITISGNISVDGIIVSAYTD
AIPKAVAMALLSPLRALYFHSNFGRYLLTKANWLHERSAAGLVRKAKVMM
KTAPHSLLSVAYLFLRSI*

spliced messenger RNA

>Gvermi7041.t1 ID=Gvermi7041.t1|Name=Gvermi7041.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1857bp|location=Sequence derived from alignment at ScGOVlb_24229:1236589..1238445+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCGTGGTCTTCTTCACATTGCTCTTTTGATTATTACGGTTCTTTG
TCTAGCTTTGCAGAGCACTGCTGAAATCAGTTACAAACACTGTGAGGGAC
CGGCCGACATAGGCAACCAAGGAGCCAAGGGCTTCTTCTTCAACGTCTGT
GTGCAGGATGAGCATTTCAACCGCCGCACGCACAACTGGGTCTTCACCAA
GTCAATTGTCAAGAACACCCGCTTTTCCGAGTGCGCGTTTCTCTTTCCGA
CACGTCGCGATGACCCCCTGGACGGTTCGACTTGGAACAATGTTTCTTTC
AAAGCTTGTACTTTTGGCGCTGAGAAAGGCAAGCGCAAGCAGACGGCAAT
GTTCACGCATACAACCATGCACAATGTGGTATTCGAAAACTGTACCTTTG
AGAATTCGCTCGACCTTGTGTTCGAAAAGTTTGCGCTGGACAGTGTTACC
TTCAAAAATTGCACGTTCAGGAATCAACTGCAGTTTAGCAAGGGTGATGT
AAAACGGTTGATTATTGCACACTCTACGCTGGGTTCCCTTTCTCCAAGCG
GTACGGAGAGAGATGGAGGCGACATATTGATGTCGGACATGTCACTCAGT
CGCGCCCTGATTCACAACACAGTCGGGTCCGGACATCTGCGTCTGCAGAG
CGCTTCAGTGGAGGATCTCGAATTGCAGTCGTCACGGATCGGCGGAGTGG
CTTGTCATGAGGAGGTTGAAGCAGACAAGTTGCCAAAAAAGAAGATTTCG
TTGCGGACGGCGATGTTCAGGAACGTGGCTTTTACGGATGGCTTCTACTG
CGATCGAACTGAAATAACTGGCCTGGACCTACTGGATGTACAGGTGCGCA
ACTTTATCGATCTGTCGAAATCTGACCTCGTCAATCTCGTCGTCAGGAAT
GTGACATCGTACGCAGAGGATGTATGCAGTACATTTTCTCTTCGTGACGC
GATTGTAGACGGGAAGACGTTGGCCGACATTAACACAACCAAAATTATTC
TGGCGGGGGCCAAGTTCCTCGAGGGTATCAGGTTCATTAACGTGTCTATA
GCGAGTAGAGAAATCGACCTCAGCGGAACAATATTCAATCAGGAGGTCAT
CGACAAGGAGTGCTGTACAGTATCCTGCTTGGAAACAGGCTGCATGTGTG
ATGTCTCGCACGAATCGCTGATATGTCCACGAGGAAACTCCACGGTAAAC
GTGAATGCCGACGACTCGTGTTTCCCCGCGCTATCTGTCGTAAAGATAAA
AACTGCTTCCGGCAGGATTCACTCTATACGCTTGGATGGACTCGAGTTCG
GGGACGCTGTGATTCATAGTTCTCTTTCGGAAGCTTCAGATGTGTTCTTT
TTCGGTCACAAGTCTTCTTCCCAGTGGGCATTGTACAAAAGGGTGGTAGC
GAAGAGCTTTGAATCAGGTCGAGAGAAGCCATACACGTTGCACATAAGTG
AATCGCACTTGCTTCCGGTGGCAGGCCTTGGCGAGGTGCCCGCTCGACGC
TTATCTGTTGGTGACAAGCTTTTCACTGAGCAAGGTGGCCTGGCGACTGT
ATCGGCAATTGAAGACCACGTGATGCTTGGGATGTATTCTCCAATAACTA
TTTCCGGCAATATATCAGTGGACGGTATTATTGTATCCGCGTACACTGAC
GCTATACCAAAGGCCGTGGCCATGGCCCTGTTATCGCCGTTGCGAGCGTT
GTATTTCCATTCCAATTTTGGACGTTATCTTCTCACAAAAGCAAACTGGT
TGCATGAACGCTCCGCCGCTGGACTGGTTCGGAAGGCCAAGGTGATGATG
AAAACGGCGCCACATTCACTGTTGAGCGTCGCGTATCTTTTCCTACGGTC
TATTTGA

protein sequence of Gvermi7041.t1

>Gvermi7041.t1 ID=Gvermi7041.t1|Name=Gvermi7041.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=619bp
MARGLLHIALLIITVLCLALQSTAEISYKHCEGPADIGNQGAKGFFFNVC
VQDEHFNRRTHNWVFTKSIVKNTRFSECAFLFPTRRDDPLDGSTWNNVSF
KACTFGAEKGKRKQTAMFTHTTMHNVVFENCTFENSLDLVFEKFALDSVT
FKNCTFRNQLQFSKGDVKRLIIAHSTLGSLSPSGTERDGGDILMSDMSLS
RALIHNTVGSGHLRLQSASVEDLELQSSRIGGVACHEEVEADKLPKKKIS
LRTAMFRNVAFTDGFYCDRTEITGLDLLDVQVRNFIDLSKSDLVNLVVRN
VTSYAEDVCSTFSLRDAIVDGKTLADINTTKIILAGAKFLEGIRFINVSI
ASREIDLSGTIFNQEVIDKECCTVSCLETGCMCDVSHESLICPRGNSTVN
VNADDSCFPALSVVKIKTASGRIHSIRLDGLEFGDAVIHSSLSEASDVFF
FGHKSSSQWALYKRVVAKSFESGREKPYTLHISESHLLPVAGLGEVPARR
LSVGDKLFTEQGGLATVSAIEDHVMLGMYSPITISGNISVDGIIVSAYTD
AIPKAVAMALLSPLRALYFHSNFGRYLLTKANWLHERSAAGLVRKAKVMM
KTAPHSLLSVAYLFLRSI*

mRNA from alignment at ScGOVlb_24229:1236589..1238445+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7041.t1 ID=Gvermi7041.t1|Name=Gvermi7041.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1857bp|location=Sequence derived from alignment at ScGOVlb_24229:1236589..1238445+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCGTGGTCTTCTTCACATTGCTCTTTTGATTATTACGGTTCTTTG
TCTAGCTTTGCAGAGCACTGCTGAAATCAGTTACAAACACTGTGAGGGAC
CGGCCGACATAGGCAACCAAGGAGCCAAGGGCTTCTTCTTCAACGTCTGT
GTGCAGGATGAGCATTTCAACCGCCGCACGCACAACTGGGTCTTCACCAA
GTCAATTGTCAAGAACACCCGCTTTTCCGAGTGCGCGTTTCTCTTTCCGA
CACGTCGCGATGACCCCCTGGACGGTTCGACTTGGAACAATGTTTCTTTC
AAAGCTTGTACTTTTGGCGCTGAGAAAGGCAAGCGCAAGCAGACGGCAAT
GTTCACGCATACAACCATGCACAATGTGGTATTCGAAAACTGTACCTTTG
AGAATTCGCTCGACCTTGTGTTCGAAAAGTTTGCGCTGGACAGTGTTACC
TTCAAAAATTGCACGTTCAGGAATCAACTGCAGTTTAGCAAGGGTGATGT
AAAACGGTTGATTATTGCACACTCTACGCTGGGTTCCCTTTCTCCAAGCG
GTACGGAGAGAGATGGAGGCGACATATTGATGTCGGACATGTCACTCAGT
CGCGCCCTGATTCACAACACAGTCGGGTCCGGACATCTGCGTCTGCAGAG
CGCTTCAGTGGAGGATCTCGAATTGCAGTCGTCACGGATCGGCGGAGTGG
CTTGTCATGAGGAGGTTGAAGCAGACAAGTTGCCAAAAAAGAAGATTTCG
TTGCGGACGGCGATGTTCAGGAACGTGGCTTTTACGGATGGCTTCTACTG
CGATCGAACTGAAATAACTGGCCTGGACCTACTGGATGTACAGGTGCGCA
ACTTTATCGATCTGTCGAAATCTGACCTCGTCAATCTCGTCGTCAGGAAT
GTGACATCGTACGCAGAGGATGTATGCAGTACATTTTCTCTTCGTGACGC
GATTGTAGACGGGAAGACGTTGGCCGACATTAACACAACCAAAATTATTC
TGGCGGGGGCCAAGTTCCTCGAGGGTATCAGGTTCATTAACGTGTCTATA
GCGAGTAGAGAAATCGACCTCAGCGGAACAATATTCAATCAGGAGGTCAT
CGACAAGGAGTGCTGTACAGTATCCTGCTTGGAAACAGGCTGCATGTGTG
ATGTCTCGCACGAATCGCTGATATGTCCACGAGGAAACTCCACGGTAAAC
GTGAATGCCGACGACTCGTGTTTCCCCGCGCTATCTGTCGTAAAGATAAA
AACTGCTTCCGGCAGGATTCACTCTATACGCTTGGATGGACTCGAGTTCG
GGGACGCTGTGATTCATAGTTCTCTTTCGGAAGCTTCAGATGTGTTCTTT
TTCGGTCACAAGTCTTCTTCCCAGTGGGCATTGTACAAAAGGGTGGTAGC
GAAGAGCTTTGAATCAGGTCGAGAGAAGCCATACACGTTGCACATAAGTG
AATCGCACTTGCTTCCGGTGGCAGGCCTTGGCGAGGTGCCCGCTCGACGC
TTATCTGTTGGTGACAAGCTTTTCACTGAGCAAGGTGGCCTGGCGACTGT
ATCGGCAATTGAAGACCACGTGATGCTTGGGATGTATTCTCCAATAACTA
TTTCCGGCAATATATCAGTGGACGGTATTATTGTATCCGCGTACACTGAC
GCTATACCAAAGGCCGTGGCCATGGCCCTGTTATCGCCGTTGCGAGCGTT
GTATTTCCATTCCAATTTTGGACGTTATCTTCTCACAAAAGCAAACTGGT
TGCATGAACGCTCCGCCGCTGGACTGGTTCGGAAGGCCAAGGTGATGATG
AAAACGGCGCCACATTCACTGTTGAGCGTCGCGTATCTTTTCCTACGGTC
TATTTGA

Coding sequence (CDS) from alignment at ScGOVlb_24229:1236589..1238445+

>Gvermi7041.t1 ID=Gvermi7041.t1|Name=Gvermi7041.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1857bp|location=Sequence derived from alignment at ScGOVlb_24229:1236589..1238445+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCGTGGTCTTCTTCACATTGCTCTTTTGATTATTACGGTTCTTTG
TCTAGCTTTGCAGAGCACTGCTGAAATCAGTTACAAACACTGTGAGGGAC
CGGCCGACATAGGCAACCAAGGAGCCAAGGGCTTCTTCTTCAACGTCTGT
GTGCAGGATGAGCATTTCAACCGCCGCACGCACAACTGGGTCTTCACCAA
GTCAATTGTCAAGAACACCCGCTTTTCCGAGTGCGCGTTTCTCTTTCCGA
CACGTCGCGATGACCCCCTGGACGGTTCGACTTGGAACAATGTTTCTTTC
AAAGCTTGTACTTTTGGCGCTGAGAAAGGCAAGCGCAAGCAGACGGCAAT
GTTCACGCATACAACCATGCACAATGTGGTATTCGAAAACTGTACCTTTG
AGAATTCGCTCGACCTTGTGTTCGAAAAGTTTGCGCTGGACAGTGTTACC
TTCAAAAATTGCACGTTCAGGAATCAACTGCAGTTTAGCAAGGGTGATGT
AAAACGGTTGATTATTGCACACTCTACGCTGGGTTCCCTTTCTCCAAGCG
GTACGGAGAGAGATGGAGGCGACATATTGATGTCGGACATGTCACTCAGT
CGCGCCCTGATTCACAACACAGTCGGGTCCGGACATCTGCGTCTGCAGAG
CGCTTCAGTGGAGGATCTCGAATTGCAGTCGTCACGGATCGGCGGAGTGG
CTTGTCATGAGGAGGTTGAAGCAGACAAGTTGCCAAAAAAGAAGATTTCG
TTGCGGACGGCGATGTTCAGGAACGTGGCTTTTACGGATGGCTTCTACTG
CGATCGAACTGAAATAACTGGCCTGGACCTACTGGATGTACAGGTGCGCA
ACTTTATCGATCTGTCGAAATCTGACCTCGTCAATCTCGTCGTCAGGAAT
GTGACATCGTACGCAGAGGATGTATGCAGTACATTTTCTCTTCGTGACGC
GATTGTAGACGGGAAGACGTTGGCCGACATTAACACAACCAAAATTATTC
TGGCGGGGGCCAAGTTCCTCGAGGGTATCAGGTTCATTAACGTGTCTATA
GCGAGTAGAGAAATCGACCTCAGCGGAACAATATTCAATCAGGAGGTCAT
CGACAAGGAGTGCTGTACAGTATCCTGCTTGGAAACAGGCTGCATGTGTG
ATGTCTCGCACGAATCGCTGATATGTCCACGAGGAAACTCCACGGTAAAC
GTGAATGCCGACGACTCGTGTTTCCCCGCGCTATCTGTCGTAAAGATAAA
AACTGCTTCCGGCAGGATTCACTCTATACGCTTGGATGGACTCGAGTTCG
GGGACGCTGTGATTCATAGTTCTCTTTCGGAAGCTTCAGATGTGTTCTTT
TTCGGTCACAAGTCTTCTTCCCAGTGGGCATTGTACAAAAGGGTGGTAGC
GAAGAGCTTTGAATCAGGTCGAGAGAAGCCATACACGTTGCACATAAGTG
AATCGCACTTGCTTCCGGTGGCAGGCCTTGGCGAGGTGCCCGCTCGACGC
TTATCTGTTGGTGACAAGCTTTTCACTGAGCAAGGTGGCCTGGCGACTGT
ATCGGCAATTGAAGACCACGTGATGCTTGGGATGTATTCTCCAATAACTA
TTTCCGGCAATATATCAGTGGACGGTATTATTGTATCCGCGTACACTGAC
GCTATACCAAAGGCCGTGGCCATGGCCCTGTTATCGCCGTTGCGAGCGTT
GTATTTCCATTCCAATTTTGGACGTTATCTTCTCACAAAAGCAAACTGGT
TGCATGAACGCTCCGCCGCTGGACTGGTTCGGAAGGCCAAGGTGATGATG
AAAACGGCGCCACATTCACTGTTGAGCGTCGCGTATCTTTTCCTACGGTC
TATTTGA