Gvermi7081.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7081.t1
Unique NameGvermi7081.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length629
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1551658..1553617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD14177
PFAMsNAD_binding_8
Max annot lvl2759|Eukaryota
Evalue1.62e-25
EggNOG OGs2CYBD@1|root,2S3CI@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7081Gvermi7081Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1551658..1553617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7081.t1Gvermi7081.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1551658..1553617 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7081.t1.stop1Gvermi7081.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1551658..1551660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7081.t1.CDS1Gvermi7081.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1551658..1553278 -
Gvermi7081.t1.CDS2Gvermi7081.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1553352..1553617 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7081.t1.exon1Gvermi7081.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1551658..1553278 -
Gvermi7081.t1.exon2Gvermi7081.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1553352..1553617 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7081.t1.intron1Gvermi7081.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 1553279..1553351 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7081.t1.start1Gvermi7081.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1553615..1553617 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7081.t1 ID=Gvermi7081.t1|Name=Gvermi7081.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=629bp
MMYALVLPLIFTLISRAFASPPRDCHVAIVGAGIGGAYTAWRLAVDTLDI
PAHRVCIFEAKSRPGGRILSVKDAVPAFENYTVDLGAYRYHRTRHPLTRF
VVEDILRLPVRCYSDLFSIKQNTQCPSETQQLVTARGSSFSYTVDGASSA
EIALSNYSSRVPYVIPLEGQWGPMRPRRSPRSPYDLLFPPSSVIPETESA
WTEIDSESSYPAAMRQADAAIRMLNNGTYRGASYWDVALSTAASAEGYDP
EELALYLGVDVTVVEGYVIRHSIAELAQIELRDMAASKRRLSGPNGYVVP
VETRDGRTRRLGMATVVHKMLRACEAAGVRVFYGTKIAAISRYRKRRRLL
KLQVEGGGIVLARNVVLNIGKPDLIAMGVTSEPLRSGGYVFRRAVDHTTV
SGLAKMYCFWEDAWWVTKLNQTEGRFKATGELLQSGRYHDGDVTCRDLKN
TKDCRGALLVSYVQGDAYMVGSGLFPHNFNSAPYSPLSHADNVHRLIPGN
MTASEKLLFDDIHAQLRRIHRAPLAAVGLGEDSISEAAGCVYADWRDIGT
HDFIGTGLAGVNVYPLYTRPVPSLNISLVNEAWGEVSGWAEASLRSAERA
LFHQYRLKRPSWMDEPFHTSVIRKFNRG*
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spliced messenger RNA

>Gvermi7081.t1 ID=Gvermi7081.t1|Name=Gvermi7081.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1887bp|location=Sequence derived from alignment at ScGOVlb_24229:1551658..1553617- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTACGCACTTGTTCTCCCGCTCATATTCACTCTTATATCCCGCGC
GTTCGCTTCCCCGCCTCGAGACTGTCACGTTGCAATCGTTGGCGCAGGCA
TCGGTGGAGCGTACACGGCGTGGCGCTTGGCAGTTGACACGCTCGACATT
CCCGCCCATCGTGTATGCATCTTCGAGGCCAAATCGCGTCCTGGTGGTCG
CATTCTCTCGGTCAAGGACGCCGTGCCCGCTTTCGAAAACTATACAGTGG
ATTTGGGAGCATATCGCTATCACCGCACACGTCACCCGCTTACTCGCTTT
GTGGTCGAGGACATTCTCCGTCTTCCTGTCCGTTGCTACTCCGACTTGTT
TTCTATCAAGCAAAACACTCAGTGCCCGTCTGAAACGCAGCAACTTGTCA
CTGCGAGGGGTAGCAGCTTCAGCTACACTGTCGATGGTGCTTCGTCTGCA
GAGATTGCACTTTCGAACTACTCCTCGCGTGTGCCATATGTGATTCCACT
GGAAGGGCAATGGGGTCCCATGCGACCTCGGAGATCACCTCGTTCTCCAT
ACGACCTTCTTTTTCCGCCGTCCTCAGTGATTCCTGAAACCGAATCCGCC
TGGACCGAGATTGATTCCGAGTCCAGCTACCCGGCGGCGATGCGTCAAGC
CGATGCCGCCATACGTATGCTGAATAACGGTACCTATCGAGGCGCGTCAT
ACTGGGATGTCGCTCTGTCCACTGCCGCATCAGCTGAGGGATACGATCCT
GAGGAACTTGCATTGTATCTCGGAGTTGATGTGACTGTAGTGGAGGGGTA
TGTTATTCGGCATAGTATTGCCGAGCTCGCGCAGATCGAGCTTCGCGACA
TGGCAGCTTCCAAACGTCGTTTGTCTGGTCCAAATGGCTACGTTGTCCCC
GTGGAAACTCGTGATGGCCGAACTAGGCGACTCGGTATGGCCACCGTTGT
TCACAAGATGCTGCGAGCGTGCGAGGCAGCCGGTGTGCGTGTCTTCTACG
GTACAAAGATTGCCGCGATCTCGCGTTACCGCAAACGTCGCCGGCTGCTC
AAACTGCAAGTTGAGGGCGGGGGTATTGTTCTTGCTCGCAATGTAGTGTT
AAACATTGGCAAGCCCGATCTCATTGCAATGGGTGTCACCTCGGAGCCTC
TTCGAAGCGGTGGATATGTGTTTCGTCGAGCCGTTGACCACACCACAGTC
TCTGGCCTCGCGAAGATGTACTGCTTTTGGGAGGACGCCTGGTGGGTGAC
TAAACTGAATCAAACCGAGGGCCGTTTCAAAGCCACGGGGGAATTACTGC
AATCTGGGAGATACCATGATGGCGACGTCACGTGTCGCGATTTGAAGAAC
ACCAAAGACTGTCGCGGCGCCCTTCTTGTCTCGTACGTACAGGGTGACGC
CTACATGGTAGGATCGGGATTGTTCCCGCACAATTTCAATTCGGCGCCTT
ATTCACCCTTGTCGCACGCTGATAATGTGCATAGACTGATTCCTGGAAAC
ATGACAGCTTCAGAGAAACTTCTTTTCGACGACATTCATGCGCAACTTCG
ACGCATCCACCGCGCACCGTTGGCTGCCGTTGGGCTTGGGGAGGATTCCA
TATCCGAGGCTGCTGGATGCGTCTATGCTGATTGGCGCGATATAGGTACA
CATGATTTCATCGGAACCGGTCTGGCCGGAGTTAATGTATACCCGCTCTA
CACACGCCCTGTGCCGAGTCTCAATATCTCCCTCGTGAACGAGGCTTGGG
GTGAGGTTTCAGGATGGGCCGAAGCTTCTCTCCGCAGTGCCGAGCGAGCA
CTGTTTCACCAGTATCGCTTGAAACGCCCGTCGTGGATGGACGAGCCTTT
CCACACTTCAGTCATTCGCAAATTCAACCGCGGGTAG
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protein sequence of Gvermi7081.t1

>Gvermi7081.t1 ID=Gvermi7081.t1|Name=Gvermi7081.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=629bp
MMYALVLPLIFTLISRAFASPPRDCHVAIVGAGIGGAYTAWRLAVDTLDI
PAHRVCIFEAKSRPGGRILSVKDAVPAFENYTVDLGAYRYHRTRHPLTRF
VVEDILRLPVRCYSDLFSIKQNTQCPSETQQLVTARGSSFSYTVDGASSA
EIALSNYSSRVPYVIPLEGQWGPMRPRRSPRSPYDLLFPPSSVIPETESA
WTEIDSESSYPAAMRQADAAIRMLNNGTYRGASYWDVALSTAASAEGYDP
EELALYLGVDVTVVEGYVIRHSIAELAQIELRDMAASKRRLSGPNGYVVP
VETRDGRTRRLGMATVVHKMLRACEAAGVRVFYGTKIAAISRYRKRRRLL
KLQVEGGGIVLARNVVLNIGKPDLIAMGVTSEPLRSGGYVFRRAVDHTTV
SGLAKMYCFWEDAWWVTKLNQTEGRFKATGELLQSGRYHDGDVTCRDLKN
TKDCRGALLVSYVQGDAYMVGSGLFPHNFNSAPYSPLSHADNVHRLIPGN
MTASEKLLFDDIHAQLRRIHRAPLAAVGLGEDSISEAAGCVYADWRDIGT
HDFIGTGLAGVNVYPLYTRPVPSLNISLVNEAWGEVSGWAEASLRSAERA
LFHQYRLKRPSWMDEPFHTSVIRKFNRG*
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mRNA from alignment at ScGOVlb_24229:1551658..1553617-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7081.t1 ID=Gvermi7081.t1|Name=Gvermi7081.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1960bp|location=Sequence derived from alignment at ScGOVlb_24229:1551658..1553617- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGTACGCACTTGTTCTCCCGCTCATATTCACTCTTATATCCCGCGC
GTTCGCTTCCCCGCCTCGAGACTGTCACGTTGCAATCGTTGGCGCAGGCA
TCGGTGGAGCGTACACGGCGTGGCGCTTGGCAGTTGACACGCTCGACATT
CCCGCCCATCGTGTATGCATCTTCGAGGCCAAATCGCGTCCTGGTGGTCG
CATTCTCTCGGTCAAGGACGCCGTGCCCGCTTTCGAAAACTATACAGTGG
ATTTGGGAGCATATCGGTATGCCTTTTCGTCATTCACTTGTCCAAGCTTC
GCGTACAATACGTTACTCAATACTCTGACGAGCATGTAGCTATCACCGCA
CACGTCACCCGCTTACTCGCTTTGTGGTCGAGGACATTCTCCGTCTTCCT
GTCCGTTGCTACTCCGACTTGTTTTCTATCAAGCAAAACACTCAGTGCCC
GTCTGAAACGCAGCAACTTGTCACTGCGAGGGGTAGCAGCTTCAGCTACA
CTGTCGATGGTGCTTCGTCTGCAGAGATTGCACTTTCGAACTACTCCTCG
CGTGTGCCATATGTGATTCCACTGGAAGGGCAATGGGGTCCCATGCGACC
TCGGAGATCACCTCGTTCTCCATACGACCTTCTTTTTCCGCCGTCCTCAG
TGATTCCTGAAACCGAATCCGCCTGGACCGAGATTGATTCCGAGTCCAGC
TACCCGGCGGCGATGCGTCAAGCCGATGCCGCCATACGTATGCTGAATAA
CGGTACCTATCGAGGCGCGTCATACTGGGATGTCGCTCTGTCCACTGCCG
CATCAGCTGAGGGATACGATCCTGAGGAACTTGCATTGTATCTCGGAGTT
GATGTGACTGTAGTGGAGGGGTATGTTATTCGGCATAGTATTGCCGAGCT
CGCGCAGATCGAGCTTCGCGACATGGCAGCTTCCAAACGTCGTTTGTCTG
GTCCAAATGGCTACGTTGTCCCCGTGGAAACTCGTGATGGCCGAACTAGG
CGACTCGGTATGGCCACCGTTGTTCACAAGATGCTGCGAGCGTGCGAGGC
AGCCGGTGTGCGTGTCTTCTACGGTACAAAGATTGCCGCGATCTCGCGTT
ACCGCAAACGTCGCCGGCTGCTCAAACTGCAAGTTGAGGGCGGGGGTATT
GTTCTTGCTCGCAATGTAGTGTTAAACATTGGCAAGCCCGATCTCATTGC
AATGGGTGTCACCTCGGAGCCTCTTCGAAGCGGTGGATATGTGTTTCGTC
GAGCCGTTGACCACACCACAGTCTCTGGCCTCGCGAAGATGTACTGCTTT
TGGGAGGACGCCTGGTGGGTGACTAAACTGAATCAAACCGAGGGCCGTTT
CAAAGCCACGGGGGAATTACTGCAATCTGGGAGATACCATGATGGCGACG
TCACGTGTCGCGATTTGAAGAACACCAAAGACTGTCGCGGCGCCCTTCTT
GTCTCGTACGTACAGGGTGACGCCTACATGGTAGGATCGGGATTGTTCCC
GCACAATTTCAATTCGGCGCCTTATTCACCCTTGTCGCACGCTGATAATG
TGCATAGACTGATTCCTGGAAACATGACAGCTTCAGAGAAACTTCTTTTC
GACGACATTCATGCGCAACTTCGACGCATCCACCGCGCACCGTTGGCTGC
CGTTGGGCTTGGGGAGGATTCCATATCCGAGGCTGCTGGATGCGTCTATG
CTGATTGGCGCGATATAGGTACACATGATTTCATCGGAACCGGTCTGGCC
GGAGTTAATGTATACCCGCTCTACACACGCCCTGTGCCGAGTCTCAATAT
CTCCCTCGTGAACGAGGCTTGGGGTGAGGTTTCAGGATGGGCCGAAGCTT
CTCTCCGCAGTGCCGAGCGAGCACTGTTTCACCAGTATCGCTTGAAACGC
CCGTCGTGGATGGACGAGCCTTTCCACACTTCAGTCATTCGCAAATTCAA
CCGCGGGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1551658..1553617-

>Gvermi7081.t1 ID=Gvermi7081.t1|Name=Gvermi7081.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1887bp|location=Sequence derived from alignment at ScGOVlb_24229:1551658..1553617- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGTACGCACTTGTTCTCCCGCTCATATTCACTCTTATATCCCGCGC
GTTCGCTTCCCCGCCTCGAGACTGTCACGTTGCAATCGTTGGCGCAGGCA
TCGGTGGAGCGTACACGGCGTGGCGCTTGGCAGTTGACACGCTCGACATT
CCCGCCCATCGTGTATGCATCTTCGAGGCCAAATCGCGTCCTGGTGGTCG
CATTCTCTCGGTCAAGGACGCCGTGCCCGCTTTCGAAAACTATACAGTGG
ATTTGGGAGCATATCGCTATCACCGCACACGTCACCCGCTTACTCGCTTT
GTGGTCGAGGACATTCTCCGTCTTCCTGTCCGTTGCTACTCCGACTTGTT
TTCTATCAAGCAAAACACTCAGTGCCCGTCTGAAACGCAGCAACTTGTCA
CTGCGAGGGGTAGCAGCTTCAGCTACACTGTCGATGGTGCTTCGTCTGCA
GAGATTGCACTTTCGAACTACTCCTCGCGTGTGCCATATGTGATTCCACT
GGAAGGGCAATGGGGTCCCATGCGACCTCGGAGATCACCTCGTTCTCCAT
ACGACCTTCTTTTTCCGCCGTCCTCAGTGATTCCTGAAACCGAATCCGCC
TGGACCGAGATTGATTCCGAGTCCAGCTACCCGGCGGCGATGCGTCAAGC
CGATGCCGCCATACGTATGCTGAATAACGGTACCTATCGAGGCGCGTCAT
ACTGGGATGTCGCTCTGTCCACTGCCGCATCAGCTGAGGGATACGATCCT
GAGGAACTTGCATTGTATCTCGGAGTTGATGTGACTGTAGTGGAGGGGTA
TGTTATTCGGCATAGTATTGCCGAGCTCGCGCAGATCGAGCTTCGCGACA
TGGCAGCTTCCAAACGTCGTTTGTCTGGTCCAAATGGCTACGTTGTCCCC
GTGGAAACTCGTGATGGCCGAACTAGGCGACTCGGTATGGCCACCGTTGT
TCACAAGATGCTGCGAGCGTGCGAGGCAGCCGGTGTGCGTGTCTTCTACG
GTACAAAGATTGCCGCGATCTCGCGTTACCGCAAACGTCGCCGGCTGCTC
AAACTGCAAGTTGAGGGCGGGGGTATTGTTCTTGCTCGCAATGTAGTGTT
AAACATTGGCAAGCCCGATCTCATTGCAATGGGTGTCACCTCGGAGCCTC
TTCGAAGCGGTGGATATGTGTTTCGTCGAGCCGTTGACCACACCACAGTC
TCTGGCCTCGCGAAGATGTACTGCTTTTGGGAGGACGCCTGGTGGGTGAC
TAAACTGAATCAAACCGAGGGCCGTTTCAAAGCCACGGGGGAATTACTGC
AATCTGGGAGATACCATGATGGCGACGTCACGTGTCGCGATTTGAAGAAC
ACCAAAGACTGTCGCGGCGCCCTTCTTGTCTCGTACGTACAGGGTGACGC
CTACATGGTAGGATCGGGATTGTTCCCGCACAATTTCAATTCGGCGCCTT
ATTCACCCTTGTCGCACGCTGATAATGTGCATAGACTGATTCCTGGAAAC
ATGACAGCTTCAGAGAAACTTCTTTTCGACGACATTCATGCGCAACTTCG
ACGCATCCACCGCGCACCGTTGGCTGCCGTTGGGCTTGGGGAGGATTCCA
TATCCGAGGCTGCTGGATGCGTCTATGCTGATTGGCGCGATATAGGTACA
CATGATTTCATCGGAACCGGTCTGGCCGGAGTTAATGTATACCCGCTCTA
CACACGCCCTGTGCCGAGTCTCAATATCTCCCTCGTGAACGAGGCTTGGG
GTGAGGTTTCAGGATGGGCCGAAGCTTCTCTCCGCAGTGCCGAGCGAGCA
CTGTTTCACCAGTATCGCTTGAAACGCCCGTCGTGGATGGACGAGCCTTT
CCACACTTCAGTCATTCGCAAATTCAACCGCGGGTAG
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