Gvermi6928.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6928.t1
Unique Name	Gvermi6928.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	442

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:594375..595700 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4096.XP_009764205.1
PFAMs	Enolase_C,Enolase_N
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00349
KEGG ko	ko:K01689
KEGG Reaction	R00658
KEGG Pathway	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066
KEGG Module	M00001,M00002,M00003,M00346,M00394
GOs	GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004634,GO:0005488,GO:0005507,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005829,GO:0005886,GO:0005911,GO:0006950,GO:0006970,GO:0008150,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0010035,GO:0010038,GO:0016020,GO:0016829,GO:0016835,GO:0016836,GO:0030054,GO:0031967,GO:0031975,GO:0033993,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0050896,GO:0055044,GO:0071944,GO:0097159,GO:0097305,GO:1901363,GO:1901700
Evalue	4.07e-216
EggNOG OGs	COG0148@1\|root,KOG2670@2759\|Eukaryota,37JMA@33090\|Viridiplantae,3G9BD@35493\|Streptophyta,44DIH@71274\|asterids
EC	4.2.1.11
Description	Enolase, N-terminal domain
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6928	Gvermi6928	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 594375..595700 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6928.t1.stop1	Gvermi6928.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 594375..594377 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6928.t1.CDS1	Gvermi6928.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 594375..595700 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6928.t1.exon1	Gvermi6928.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 594375..595700 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6928.t1.start1	Gvermi6928.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 595698..595700 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6928.t1	Gvermi6928.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 594375..595700 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:594375..595700-
coding sequence from alignment at ScGOVlb_24229:594375..595700-

mRNA sequence

>Gvermi6928.t1 ID=Gvermi6928.t1|Name=Gvermi6928.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=442bp
MSATITAVTARSVFDSRGNPTVEVDVVTSDGKFSAMVPSGASTGIYEALE
LRDGDKSAYLGKGVDKAVANVKNKIAPAICGMRAADQAAIDAKMIQLDGT
EGGFKKNLGANAILGVSMACARAGAAAKRLPLYKHLNDLAGNPKMLLPVP
SLNVINGGSHAGNKLAMQEFMILPVGATTFREAMKMGAETYQYLKKVIKK
KYGLDATGVGDEGGFAPNIQDNTEGLRLLEEAIEIAGYTGKIKVGMDVAA
SEFWVDDKQKYDLDFKTPSNDGSQCLTGEQLGDLYKSFVADFPMVSIEDP
FDQDDWESYAALTAAVGDSVQIVGDDLLVTNPTRIQTGIDKKACNALLLK
VNQIGSITEAIQACKMSRDAGWGVMVSHRSGETEDTFIADLCVGLGTAQI
KTGAPCRSERLAKYNQLLRIEEELGDAAVYAGASFRTPWAI*

spliced messenger RNA

>Gvermi6928.t1 ID=Gvermi6928.t1|Name=Gvermi6928.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at ScGOVlb_24229:594375..595700- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCCACCATCACCGCTGTCACGGCGCGCTCCGTCTTCGACTCGCG
CGGAAACCCCACCGTCGAGGTCGACGTCGTCACCTCCGATGGCAAGTTCT
CCGCCATGGTGCCGTCCGGCGCCTCCACCGGCATTTACGAGGCGCTCGAG
CTGCGCGACGGCGACAAGTCCGCCTACCTGGGCAAGGGCGTCGACAAGGC
CGTGGCAAACGTCAAGAACAAGATCGCCCCGGCCATCTGCGGCATGCGCG
CCGCCGACCAGGCCGCCATCGACGCCAAGATGATCCAGCTGGACGGCACG
GAGGGCGGCTTCAAGAAGAACCTCGGCGCCAACGCCATTCTGGGCGTGTC
CATGGCCTGCGCCCGTGCTGGCGCCGCCGCCAAGCGCCTCCCGCTCTACA
AGCATCTCAACGACCTCGCCGGCAACCCCAAGATGTTGCTTCCGGTCCCG
AGTCTCAACGTCATCAACGGCGGCAGCCACGCCGGCAACAAGCTGGCCAT
GCAGGAGTTCATGATCCTTCCGGTGGGCGCCACCACGTTCCGTGAAGCCA
TGAAGATGGGCGCCGAGACGTACCAGTATCTCAAGAAGGTCATCAAGAAA
AAGTACGGTCTGGACGCCACGGGCGTCGGCGACGAGGGGGGATTTGCCCC
CAACATTCAGGACAACACCGAGGGTCTCCGACTGCTGGAGGAGGCCATCG
AAATCGCGGGATACACGGGCAAGATCAAGGTCGGCATGGACGTGGCCGCC
AGTGAGTTTTGGGTCGACGACAAGCAAAAGTACGATCTCGACTTCAAGAC
GCCCAGCAATGACGGCTCGCAGTGCCTCACCGGCGAGCAACTCGGCGACT
TGTACAAGAGCTTTGTCGCCGACTTCCCAATGGTGTCCATCGAAGATCCG
TTCGACCAGGATGACTGGGAGTCTTATGCGGCGCTCACGGCTGCCGTGGG
CGACAGCGTTCAGATCGTCGGTGACGATCTGCTCGTGACGAACCCCACGC
GCATTCAAACCGGAATCGACAAGAAGGCGTGCAACGCACTGCTGCTCAAG
GTCAATCAGATCGGGTCTATCACGGAGGCCATTCAAGCGTGCAAGATGTC
GCGCGACGCCGGATGGGGCGTCATGGTTTCCCATCGATCTGGGGAAACAG
AAGATACGTTCATCGCTGACTTGTGCGTCGGACTGGGCACTGCGCAGATC
AAGACTGGGGCCCCTTGCCGTTCTGAGCGACTCGCCAAGTACAATCAGCT
GCTGCGAATCGAGGAGGAGCTTGGCGACGCAGCCGTGTACGCTGGCGCCA
GTTTCCGTACACCGTGGGCCATATAG

protein sequence of Gvermi6928.t1

>Gvermi6928.t1 ID=Gvermi6928.t1|Name=Gvermi6928.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=442bp
MSATITAVTARSVFDSRGNPTVEVDVVTSDGKFSAMVPSGASTGIYEALE
LRDGDKSAYLGKGVDKAVANVKNKIAPAICGMRAADQAAIDAKMIQLDGT
EGGFKKNLGANAILGVSMACARAGAAAKRLPLYKHLNDLAGNPKMLLPVP
SLNVINGGSHAGNKLAMQEFMILPVGATTFREAMKMGAETYQYLKKVIKK
KYGLDATGVGDEGGFAPNIQDNTEGLRLLEEAIEIAGYTGKIKVGMDVAA
SEFWVDDKQKYDLDFKTPSNDGSQCLTGEQLGDLYKSFVADFPMVSIEDP
FDQDDWESYAALTAAVGDSVQIVGDDLLVTNPTRIQTGIDKKACNALLLK
VNQIGSITEAIQACKMSRDAGWGVMVSHRSGETEDTFIADLCVGLGTAQI
KTGAPCRSERLAKYNQLLRIEEELGDAAVYAGASFRTPWAI*

mRNA from alignment at ScGOVlb_24229:594375..595700-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6928.t1 ID=Gvermi6928.t1|Name=Gvermi6928.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at ScGOVlb_24229:594375..595700- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGCCACCATCACCGCTGTCACGGCGCGCTCCGTCTTCGACTCGCG
CGGAAACCCCACCGTCGAGGTCGACGTCGTCACCTCCGATGGCAAGTTCT
CCGCCATGGTGCCGTCCGGCGCCTCCACCGGCATTTACGAGGCGCTCGAG
CTGCGCGACGGCGACAAGTCCGCCTACCTGGGCAAGGGCGTCGACAAGGC
CGTGGCAAACGTCAAGAACAAGATCGCCCCGGCCATCTGCGGCATGCGCG
CCGCCGACCAGGCCGCCATCGACGCCAAGATGATCCAGCTGGACGGCACG
GAGGGCGGCTTCAAGAAGAACCTCGGCGCCAACGCCATTCTGGGCGTGTC
CATGGCCTGCGCCCGTGCTGGCGCCGCCGCCAAGCGCCTCCCGCTCTACA
AGCATCTCAACGACCTCGCCGGCAACCCCAAGATGTTGCTTCCGGTCCCG
AGTCTCAACGTCATCAACGGCGGCAGCCACGCCGGCAACAAGCTGGCCAT
GCAGGAGTTCATGATCCTTCCGGTGGGCGCCACCACGTTCCGTGAAGCCA
TGAAGATGGGCGCCGAGACGTACCAGTATCTCAAGAAGGTCATCAAGAAA
AAGTACGGTCTGGACGCCACGGGCGTCGGCGACGAGGGGGGATTTGCCCC
CAACATTCAGGACAACACCGAGGGTCTCCGACTGCTGGAGGAGGCCATCG
AAATCGCGGGATACACGGGCAAGATCAAGGTCGGCATGGACGTGGCCGCC
AGTGAGTTTTGGGTCGACGACAAGCAAAAGTACGATCTCGACTTCAAGAC
GCCCAGCAATGACGGCTCGCAGTGCCTCACCGGCGAGCAACTCGGCGACT
TGTACAAGAGCTTTGTCGCCGACTTCCCAATGGTGTCCATCGAAGATCCG
TTCGACCAGGATGACTGGGAGTCTTATGCGGCGCTCACGGCTGCCGTGGG
CGACAGCGTTCAGATCGTCGGTGACGATCTGCTCGTGACGAACCCCACGC
GCATTCAAACCGGAATCGACAAGAAGGCGTGCAACGCACTGCTGCTCAAG
GTCAATCAGATCGGGTCTATCACGGAGGCCATTCAAGCGTGCAAGATGTC
GCGCGACGCCGGATGGGGCGTCATGGTTTCCCATCGATCTGGGGAAACAG
AAGATACGTTCATCGCTGACTTGTGCGTCGGACTGGGCACTGCGCAGATC
AAGACTGGGGCCCCTTGCCGTTCTGAGCGACTCGCCAAGTACAATCAGCT
GCTGCGAATCGAGGAGGAGCTTGGCGACGCAGCCGTGTACGCTGGCGCCA
GTTTCCGTACACCGTGGGCCATATAG

Coding sequence (CDS) from alignment at ScGOVlb_24229:594375..595700-

>Gvermi6928.t1 ID=Gvermi6928.t1|Name=Gvermi6928.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1326bp|location=Sequence derived from alignment at ScGOVlb_24229:594375..595700- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGCCACCATCACCGCTGTCACGGCGCGCTCCGTCTTCGACTCGCG
CGGAAACCCCACCGTCGAGGTCGACGTCGTCACCTCCGATGGCAAGTTCT
CCGCCATGGTGCCGTCCGGCGCCTCCACCGGCATTTACGAGGCGCTCGAG
CTGCGCGACGGCGACAAGTCCGCCTACCTGGGCAAGGGCGTCGACAAGGC
CGTGGCAAACGTCAAGAACAAGATCGCCCCGGCCATCTGCGGCATGCGCG
CCGCCGACCAGGCCGCCATCGACGCCAAGATGATCCAGCTGGACGGCACG
GAGGGCGGCTTCAAGAAGAACCTCGGCGCCAACGCCATTCTGGGCGTGTC
CATGGCCTGCGCCCGTGCTGGCGCCGCCGCCAAGCGCCTCCCGCTCTACA
AGCATCTCAACGACCTCGCCGGCAACCCCAAGATGTTGCTTCCGGTCCCG
AGTCTCAACGTCATCAACGGCGGCAGCCACGCCGGCAACAAGCTGGCCAT
GCAGGAGTTCATGATCCTTCCGGTGGGCGCCACCACGTTCCGTGAAGCCA
TGAAGATGGGCGCCGAGACGTACCAGTATCTCAAGAAGGTCATCAAGAAA
AAGTACGGTCTGGACGCCACGGGCGTCGGCGACGAGGGGGGATTTGCCCC
CAACATTCAGGACAACACCGAGGGTCTCCGACTGCTGGAGGAGGCCATCG
AAATCGCGGGATACACGGGCAAGATCAAGGTCGGCATGGACGTGGCCGCC
AGTGAGTTTTGGGTCGACGACAAGCAAAAGTACGATCTCGACTTCAAGAC
GCCCAGCAATGACGGCTCGCAGTGCCTCACCGGCGAGCAACTCGGCGACT
TGTACAAGAGCTTTGTCGCCGACTTCCCAATGGTGTCCATCGAAGATCCG
TTCGACCAGGATGACTGGGAGTCTTATGCGGCGCTCACGGCTGCCGTGGG
CGACAGCGTTCAGATCGTCGGTGACGATCTGCTCGTGACGAACCCCACGC
GCATTCAAACCGGAATCGACAAGAAGGCGTGCAACGCACTGCTGCTCAAG
GTCAATCAGATCGGGTCTATCACGGAGGCCATTCAAGCGTGCAAGATGTC
GCGCGACGCCGGATGGGGCGTCATGGTTTCCCATCGATCTGGGGAAACAG
AAGATACGTTCATCGCTGACTTGTGCGTCGGACTGGGCACTGCGCAGATC
AAGACTGGGGCCCCTTGCCGTTCTGAGCGACTCGCCAAGTACAATCAGCT
GCTGCGAATCGAGGAGGAGCTTGGCGACGCAGCCGTGTACGCTGGCGCCA
GTTTCCGTACACCGTGGGCCATATAG