Gvermi7042.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7042.t1
Unique NameGvermi7042.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length87
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1241135..1241465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7042Gvermi7042Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1241135..1241465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7042.t1Gvermi7042.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1241135..1241465 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7042.t1.stop1Gvermi7042.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1241135..1241137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7042.t1.CDS1Gvermi7042.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1241135..1241262 -
Gvermi7042.t1.CDS2Gvermi7042.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1241333..1241465 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7042.t1.exon1Gvermi7042.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1241135..1241262 -
Gvermi7042.t1.exon2Gvermi7042.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1241333..1241465 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7042.t1.intron1Gvermi7042.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 1241263..1241332 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7042.t1.start1Gvermi7042.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1241463..1241465 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7042.t1 ID=Gvermi7042.t1|Name=Gvermi7042.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=87bp
MSVLNTTGIKQKQSNPPASASFMFVDVSYSDQLRRRILVYTTMLRSNTFC
ILAHNTFYTHIFHLCCGLFYKLSFWFVTKWRFRKAM*
back to top

spliced messenger RNA

>Gvermi7042.t1 ID=Gvermi7042.t1|Name=Gvermi7042.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=261bp|location=Sequence derived from alignment at ScGOVlb_24229:1241135..1241465- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTACTCAATACAACCGGCATCAAACAGAAACAATCGAACCCTCC
CGCATCTGCTTCTTTCATGTTTGTAGATGTCTCTTACAGTGATCAACTTC
GGAGGAGAATCTTGGTTTATACAACAATGTTGAGGAGCAACACTTTCTGC
ATTCTTGCCCACAATACGTTTTATACACATATTTTTCACCTTTGCTGCGG
TCTGTTTTATAAGTTATCGTTTTGGTTCGTCACCAAGTGGCGTTTCCGAA
AAGCAATGTGA
back to top

protein sequence of Gvermi7042.t1

>Gvermi7042.t1 ID=Gvermi7042.t1|Name=Gvermi7042.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=87bp
MSVLNTTGIKQKQSNPPASASFMFVDVSYSDQLRRRILVYTTMLRSNTFC
ILAHNTFYTHIFHLCCGLFYKLSFWFVTKWRFRKAM*
back to top

mRNA from alignment at ScGOVlb_24229:1241135..1241465-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7042.t1 ID=Gvermi7042.t1|Name=Gvermi7042.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=331bp|location=Sequence derived from alignment at ScGOVlb_24229:1241135..1241465- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGTACTCAATACAACCGGCATCAAACAGAAACAATCGAACCCTCC
CGCATCTGCTTCTTTCATGTTTGTAGATGTCTCTTACAGTGATCAACTTC
GGAGGAGAATCTTGGTTTATACAACAATGTTGAGTGTGTTTTATATCCAA
GAAATGGTCGTATAACTGCGGGAAACGATGTTTCTGACCCCTCTTTTTTC
CAGGGAGCAACACTTTCTGCATTCTTGCCCACAATACGTTTTATACACAT
ATTTTTCACCTTTGCTGCGGTCTGTTTTATAAGTTATCGTTTTGGTTCGT
CACCAAGTGGCGTTTCCGAAAAGCAATGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:1241135..1241465-

>Gvermi7042.t1 ID=Gvermi7042.t1|Name=Gvermi7042.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=261bp|location=Sequence derived from alignment at ScGOVlb_24229:1241135..1241465- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGTACTCAATACAACCGGCATCAAACAGAAACAATCGAACCCTCC
CGCATCTGCTTCTTTCATGTTTGTAGATGTCTCTTACAGTGATCAACTTC
GGAGGAGAATCTTGGTTTATACAACAATGTTGAGGAGCAACACTTTCTGC
ATTCTTGCCCACAATACGTTTTATACACATATTTTTCACCTTTGCTGCGG
TCTGTTTTATAAGTTATCGTTTTGGTTCGTCACCAAGTGGCGTTTCCGAA
AAGCAATGTGA
back to top