Gvermi7031.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7031.t1
Unique NameGvermi7031.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length622
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1034778..1036752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog568076.XP_007823090.1
PFAMsSNF
Max annot lvl4751|Fungi
KEGG koko:K05034
KEGG TC2.A.22.3.2
KEGG Pathwayko04727,map04727
Evalue1.01e-195
EggNOG OGsCOG0733@1|root,KOG3660@2759|Eukaryota,38G22@33154|Opisthokonta,3NYFJ@4751|Fungi,3QNAC@4890|Ascomycota,211DN@147550|Sordariomycetes,3TCRZ@5125|Hypocreales
DescriptionSodium:neurotransmitter symporter family
COG categoryT
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7031Gvermi7031Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1034778..1036752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7031.t1Gvermi7031.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1034778..1036752 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7031.t1.start1Gvermi7031.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1034778..1034780 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7031.t1.CDS1Gvermi7031.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1034778..1036226 +
Gvermi7031.t1.CDS2Gvermi7031.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1036336..1036752 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7031.t1.exon1Gvermi7031.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1034778..1036226 +
Gvermi7031.t1.exon2Gvermi7031.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1036336..1036752 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7031.t1.intron1Gvermi7031.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 1036227..1036335 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7031.t1.stop1Gvermi7031.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1036750..1036752 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7031.t1 ID=Gvermi7031.t1|Name=Gvermi7031.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=622bp
MGLAVGIGNLLRYPSIAYNNLGVQWFIPYVMALLFVGIPLLLLEISIGQA
YRGGAVVAFNRLSHRLRGLGISVVYVGFTVASYYVVILAWAMVFLRHSFT
SPLPWSGGRQQLLDFFNNSVIRNDVSMDRDGNNVYNHTGVVGETIGWALL
IWILVYLSIFKGVSLTGRVVYFSMLFPLAMLVVITIRAVTLENAWRGIRL
YIATWNGSKLGDGRIWKDAVGQIFFSIGTGFGSFIAYASYNSTYANAVQD
SLIIAFSNSCYEVIAGFAAFGVIGFLNLPTDNELSTFVLAFLTYPQALAE
LPGSNVWAFLFFLTIIILGIDSAFGLLEGLVTVLADTDWGKKLPRSALVF
GVTLSAALLSIMYTTQFGLSLLDAVDKWFNELALILSMWVQCTGVTSLYR
YKDVISQTGSVAFTVANCAYVLSMLLLVVLGHAVHSWVGALGFASVLVSG
TFASVILSKDPTIPSPWARSRYTDRLWWLTMYSGEQLRRDLNVIVAKGQN
WKIPPLWAPMLRWLTAPVLAVILSYSYRDFILGPPGKKPFSRDPLNVYGF
VAAHLVALFLVVGIVIPRVFDVFITRESKEDHRLQYETNPLEVLKENRDL
PIDDSEQVTGEPEETIDAAAT*
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spliced messenger RNA

>Gvermi7031.t1 ID=Gvermi7031.t1|Name=Gvermi7031.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at ScGOVlb_24229:1034778..1036752+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTTGCCGTTGGCATCGGTAATCTGCTTCGGTACCCATCTATAGC
GTACAACAACCTGGGTGTCCAATGGTTCATTCCATACGTAATGGCTTTGT
TGTTTGTAGGGATTCCACTACTACTACTTGAAATATCCATCGGCCAAGCC
TACCGTGGAGGAGCCGTTGTGGCATTCAATCGCCTTTCTCACCGTCTTCG
CGGACTCGGTATCTCAGTTGTATACGTTGGCTTCACAGTTGCTTCCTATT
ATGTTGTCATTCTTGCGTGGGCTATGGTGTTTCTCAGGCATAGCTTTACG
TCGCCGTTGCCATGGAGTGGGGGGCGCCAACAACTACTGGACTTCTTTAA
CAACAGCGTCATCCGCAATGACGTTTCCATGGATCGCGACGGCAACAATG
TCTACAATCACACTGGCGTTGTTGGAGAAACAATCGGTTGGGCATTACTG
ATATGGATTCTCGTGTACCTGAGTATCTTTAAGGGTGTCAGCCTTACCGG
AAGAGTTGTTTACTTCTCTATGCTCTTCCCTCTGGCAATGTTGGTTGTGA
TCACCATTCGCGCTGTTACTCTTGAGAATGCATGGCGCGGCATTCGCCTG
TACATCGCTACATGGAACGGGTCCAAACTTGGAGATGGGCGGATATGGAA
AGACGCCGTGGGGCAGATATTCTTTAGTATTGGAACTGGTTTTGGATCTT
TCATTGCATATGCAAGTTACAATAGCACTTACGCAAATGCTGTACAAGAC
TCACTCATAATTGCGTTTTCTAACTCGTGTTATGAAGTCATAGCTGGCTT
TGCTGCTTTCGGTGTCATTGGATTTCTCAATCTTCCCACAGATAACGAGC
TCAGTACTTTTGTCCTAGCTTTCCTAACTTATCCACAAGCCTTGGCAGAG
TTACCGGGCAGCAATGTATGGGCTTTTCTCTTCTTCCTGACAATCATCAT
TCTTGGTATCGATTCGGCTTTTGGGTTATTAGAAGGTCTTGTGACAGTTC
TTGCTGATACGGACTGGGGCAAAAAGCTCCCCAGATCAGCATTGGTTTTT
GGAGTGACTCTCTCTGCGGCTCTTTTGAGCATAATGTATACGACTCAATT
TGGATTGAGTTTATTAGACGCAGTCGATAAGTGGTTTAATGAACTTGCCT
TGATTTTATCTATGTGGGTCCAATGCACGGGAGTCACATCTTTGTATCGC
TACAAAGACGTCATTTCTCAAACTGGTTCCGTGGCTTTTACGGTGGCAAA
CTGTGCATATGTCCTCAGCATGCTTTTACTTGTTGTTCTAGGGCACGCGG
TCCACTCGTGGGTTGGTGCTCTTGGGTTTGCTAGTGTGTTAGTAAGTGGA
ACGTTCGCAAGCGTTATCTTGTCAAAGGATCCCACAATTCCGAGTCCCTG
GGCAAGGTCGAGGTATACTGACCGACTATGGTGGCTAACTATGTATTCGG
GTGAACAACTTCGGAGGGACCTCAACGTCATTGTGGCCAAGGGTCAGAAT
TGGAAAATTCCCCCACTCTGGGCACCAATGTTGCGCTGGCTCACCGCTCC
AGTGCTCGCAGTAATACTGTCTTACTCCTACCGAGATTTCATACTTGGGC
CGCCTGGGAAGAAACCATTCAGTCGGGATCCTCTCAATGTGTACGGTTTC
GTCGCGGCTCATTTGGTCGCATTGTTCCTTGTTGTTGGCATCGTTATCCC
AAGGGTTTTTGATGTATTCATTACCAGAGAAAGCAAAGAAGACCACCGGC
TGCAATACGAGACAAACCCATTGGAAGTCCTCAAGGAAAACAGGGATTTG
CCAATCGACGACAGTGAGCAGGTGACGGGTGAGCCAGAAGAAACGATTGA
TGCAGCAGCAACCTAA
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protein sequence of Gvermi7031.t1

>Gvermi7031.t1 ID=Gvermi7031.t1|Name=Gvermi7031.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=622bp
MGLAVGIGNLLRYPSIAYNNLGVQWFIPYVMALLFVGIPLLLLEISIGQA
YRGGAVVAFNRLSHRLRGLGISVVYVGFTVASYYVVILAWAMVFLRHSFT
SPLPWSGGRQQLLDFFNNSVIRNDVSMDRDGNNVYNHTGVVGETIGWALL
IWILVYLSIFKGVSLTGRVVYFSMLFPLAMLVVITIRAVTLENAWRGIRL
YIATWNGSKLGDGRIWKDAVGQIFFSIGTGFGSFIAYASYNSTYANAVQD
SLIIAFSNSCYEVIAGFAAFGVIGFLNLPTDNELSTFVLAFLTYPQALAE
LPGSNVWAFLFFLTIIILGIDSAFGLLEGLVTVLADTDWGKKLPRSALVF
GVTLSAALLSIMYTTQFGLSLLDAVDKWFNELALILSMWVQCTGVTSLYR
YKDVISQTGSVAFTVANCAYVLSMLLLVVLGHAVHSWVGALGFASVLVSG
TFASVILSKDPTIPSPWARSRYTDRLWWLTMYSGEQLRRDLNVIVAKGQN
WKIPPLWAPMLRWLTAPVLAVILSYSYRDFILGPPGKKPFSRDPLNVYGF
VAAHLVALFLVVGIVIPRVFDVFITRESKEDHRLQYETNPLEVLKENRDL
PIDDSEQVTGEPEETIDAAAT*
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mRNA from alignment at ScGOVlb_24229:1034778..1036752+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7031.t1 ID=Gvermi7031.t1|Name=Gvermi7031.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1975bp|location=Sequence derived from alignment at ScGOVlb_24229:1034778..1036752+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGCTTGCCGTTGGCATCGGTAATCTGCTTCGGTACCCATCTATAGC
GTACAACAACCTGGGTGTCCAATGGTTCATTCCATACGTAATGGCTTTGT
TGTTTGTAGGGATTCCACTACTACTACTTGAAATATCCATCGGCCAAGCC
TACCGTGGAGGAGCCGTTGTGGCATTCAATCGCCTTTCTCACCGTCTTCG
CGGACTCGGTATCTCAGTTGTATACGTTGGCTTCACAGTTGCTTCCTATT
ATGTTGTCATTCTTGCGTGGGCTATGGTGTTTCTCAGGCATAGCTTTACG
TCGCCGTTGCCATGGAGTGGGGGGCGCCAACAACTACTGGACTTCTTTAA
CAACAGCGTCATCCGCAATGACGTTTCCATGGATCGCGACGGCAACAATG
TCTACAATCACACTGGCGTTGTTGGAGAAACAATCGGTTGGGCATTACTG
ATATGGATTCTCGTGTACCTGAGTATCTTTAAGGGTGTCAGCCTTACCGG
AAGAGTTGTTTACTTCTCTATGCTCTTCCCTCTGGCAATGTTGGTTGTGA
TCACCATTCGCGCTGTTACTCTTGAGAATGCATGGCGCGGCATTCGCCTG
TACATCGCTACATGGAACGGGTCCAAACTTGGAGATGGGCGGATATGGAA
AGACGCCGTGGGGCAGATATTCTTTAGTATTGGAACTGGTTTTGGATCTT
TCATTGCATATGCAAGTTACAATAGCACTTACGCAAATGCTGTACAAGAC
TCACTCATAATTGCGTTTTCTAACTCGTGTTATGAAGTCATAGCTGGCTT
TGCTGCTTTCGGTGTCATTGGATTTCTCAATCTTCCCACAGATAACGAGC
TCAGTACTTTTGTCCTAGCTTTCCTAACTTATCCACAAGCCTTGGCAGAG
TTACCGGGCAGCAATGTATGGGCTTTTCTCTTCTTCCTGACAATCATCAT
TCTTGGTATCGATTCGGCTTTTGGGTTATTAGAAGGTCTTGTGACAGTTC
TTGCTGATACGGACTGGGGCAAAAAGCTCCCCAGATCAGCATTGGTTTTT
GGAGTGACTCTCTCTGCGGCTCTTTTGAGCATAATGTATACGACTCAATT
TGGATTGAGTTTATTAGACGCAGTCGATAAGTGGTTTAATGAACTTGCCT
TGATTTTATCTATGTGGGTCCAATGCACGGGAGTCACATCTTTGTATCGC
TACAAAGACGTCATTTCTCAAACTGGTTCCGTGGCTTTTACGGTGGCAAA
CTGTGCATATGTCCTCAGCATGCTTTTACTTGTTGTTCTAGGGCACGCGG
TCCACTCGTGGGTTGGTGCTCTTGGGTTTGCTAGTGTGTTAGTAAGTGGA
ACGTTCGCAAGCGTTATCTTGTCAAAGGATCCCACAATTCCGAGTCCCTG
GGCAAGGTCGAGGTATACTGACCGACTATGGTGGCTAACTATGTATTCGG
TAAGATCGCTTCCCCGCAACCTCGCGCGTTCAACGAGAGAGCTAACTAGT
AAGCGAGTAATTTTATTTACGTGAATGTTTCATGTGAATGTTTCAAATCT
GCGTATAGGGTGAACAACTTCGGAGGGACCTCAACGTCATTGTGGCCAAG
GGTCAGAATTGGAAAATTCCCCCACTCTGGGCACCAATGTTGCGCTGGCT
CACCGCTCCAGTGCTCGCAGTAATACTGTCTTACTCCTACCGAGATTTCA
TACTTGGGCCGCCTGGGAAGAAACCATTCAGTCGGGATCCTCTCAATGTG
TACGGTTTCGTCGCGGCTCATTTGGTCGCATTGTTCCTTGTTGTTGGCAT
CGTTATCCCAAGGGTTTTTGATGTATTCATTACCAGAGAAAGCAAAGAAG
ACCACCGGCTGCAATACGAGACAAACCCATTGGAAGTCCTCAAGGAAAAC
AGGGATTTGCCAATCGACGACAGTGAGCAGGTGACGGGTGAGCCAGAAGA
AACGATTGATGCAGCAGCAACCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1034778..1036752+

>Gvermi7031.t1 ID=Gvermi7031.t1|Name=Gvermi7031.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1866bp|location=Sequence derived from alignment at ScGOVlb_24229:1034778..1036752+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGCTTGCCGTTGGCATCGGTAATCTGCTTCGGTACCCATCTATAGC
GTACAACAACCTGGGTGTCCAATGGTTCATTCCATACGTAATGGCTTTGT
TGTTTGTAGGGATTCCACTACTACTACTTGAAATATCCATCGGCCAAGCC
TACCGTGGAGGAGCCGTTGTGGCATTCAATCGCCTTTCTCACCGTCTTCG
CGGACTCGGTATCTCAGTTGTATACGTTGGCTTCACAGTTGCTTCCTATT
ATGTTGTCATTCTTGCGTGGGCTATGGTGTTTCTCAGGCATAGCTTTACG
TCGCCGTTGCCATGGAGTGGGGGGCGCCAACAACTACTGGACTTCTTTAA
CAACAGCGTCATCCGCAATGACGTTTCCATGGATCGCGACGGCAACAATG
TCTACAATCACACTGGCGTTGTTGGAGAAACAATCGGTTGGGCATTACTG
ATATGGATTCTCGTGTACCTGAGTATCTTTAAGGGTGTCAGCCTTACCGG
AAGAGTTGTTTACTTCTCTATGCTCTTCCCTCTGGCAATGTTGGTTGTGA
TCACCATTCGCGCTGTTACTCTTGAGAATGCATGGCGCGGCATTCGCCTG
TACATCGCTACATGGAACGGGTCCAAACTTGGAGATGGGCGGATATGGAA
AGACGCCGTGGGGCAGATATTCTTTAGTATTGGAACTGGTTTTGGATCTT
TCATTGCATATGCAAGTTACAATAGCACTTACGCAAATGCTGTACAAGAC
TCACTCATAATTGCGTTTTCTAACTCGTGTTATGAAGTCATAGCTGGCTT
TGCTGCTTTCGGTGTCATTGGATTTCTCAATCTTCCCACAGATAACGAGC
TCAGTACTTTTGTCCTAGCTTTCCTAACTTATCCACAAGCCTTGGCAGAG
TTACCGGGCAGCAATGTATGGGCTTTTCTCTTCTTCCTGACAATCATCAT
TCTTGGTATCGATTCGGCTTTTGGGTTATTAGAAGGTCTTGTGACAGTTC
TTGCTGATACGGACTGGGGCAAAAAGCTCCCCAGATCAGCATTGGTTTTT
GGAGTGACTCTCTCTGCGGCTCTTTTGAGCATAATGTATACGACTCAATT
TGGATTGAGTTTATTAGACGCAGTCGATAAGTGGTTTAATGAACTTGCCT
TGATTTTATCTATGTGGGTCCAATGCACGGGAGTCACATCTTTGTATCGC
TACAAAGACGTCATTTCTCAAACTGGTTCCGTGGCTTTTACGGTGGCAAA
CTGTGCATATGTCCTCAGCATGCTTTTACTTGTTGTTCTAGGGCACGCGG
TCCACTCGTGGGTTGGTGCTCTTGGGTTTGCTAGTGTGTTAGTAAGTGGA
ACGTTCGCAAGCGTTATCTTGTCAAAGGATCCCACAATTCCGAGTCCCTG
GGCAAGGTCGAGGTATACTGACCGACTATGGTGGCTAACTATGTATTCGG
GTGAACAACTTCGGAGGGACCTCAACGTCATTGTGGCCAAGGGTCAGAAT
TGGAAAATTCCCCCACTCTGGGCACCAATGTTGCGCTGGCTCACCGCTCC
AGTGCTCGCAGTAATACTGTCTTACTCCTACCGAGATTTCATACTTGGGC
CGCCTGGGAAGAAACCATTCAGTCGGGATCCTCTCAATGTGTACGGTTTC
GTCGCGGCTCATTTGGTCGCATTGTTCCTTGTTGTTGGCATCGTTATCCC
AAGGGTTTTTGATGTATTCATTACCAGAGAAAGCAAAGAAGACCACCGGC
TGCAATACGAGACAAACCCATTGGAAGTCCTCAAGGAAAACAGGGATTTG
CCAATCGACGACAGTGAGCAGGTGACGGGTGAGCCAGAAGAAACGATTGA
TGCAGCAGCAACCTAA
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