Gvermi7072.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7072.t1
Unique NameGvermi7072.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1448379..1449182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog756067.MicvaDRAFT_1735
PFAMsDUF2235
Max annot lvl1117|Cyanobacteria
Evalue2.35e-58
EggNOG OGsCOG3673@1|root,COG3673@2|Bacteria,1G1VC@1117|Cyanobacteria,1H9I8@1150|Oscillatoriales
Description'Conserved protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7072Gvermi7072Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1448379..1449182 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7072.t1.stop1Gvermi7072.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1448379..1448381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7072.t1.CDS1Gvermi7072.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1448379..1449182 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7072.t1.exon1Gvermi7072.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1448379..1449182 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7072.t1.start1Gvermi7072.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1449180..1449182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7072.t1Gvermi7072.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1448379..1449182 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7072.t1 ID=Gvermi7072.t1|Name=Gvermi7072.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=268bp
MNYEEGDEIYLFGFSRGAYTVRSLAGMMHESGLLYREHLDNVKEAYELYR
DNDDVDSAIAKEFRAKYARRVPIKLLMCFDTVGALGLPPGLPFPLSVIGD
EDRYRFHNTELSEYIENAIHLMSIDEDKKSFSPTPMTPNPKRGSKQLTQK
FMPGSHGGIGGGNAAEIELSRNALFFTLEEMKRRELGIEFGGDLLPKEYT
YNIEPRNPHPWFSRHNIIKAISGGEQPREIKSIHDLHETAIRRYNKFKNW
RPMSLDHLKDSLLARVD*
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spliced messenger RNA

>Gvermi7072.t1 ID=Gvermi7072.t1|Name=Gvermi7072.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=804bp|location=Sequence derived from alignment at ScGOVlb_24229:1448379..1449182- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTATGAGGAAGGAGATGAAATATACCTCTTCGGCTTCTCACGCGG
CGCCTACACAGTGCGTTCGCTGGCCGGTATGATGCATGAGTCCGGCCTCT
TGTACAGAGAACACCTCGACAACGTCAAAGAGGCGTACGAGTTGTACCGT
GACAACGACGACGTCGATTCCGCGATTGCGAAAGAATTTCGTGCCAAGTA
CGCCAGAAGAGTTCCTATCAAGTTGCTTATGTGCTTTGACACGGTCGGAG
CGTTGGGACTGCCGCCAGGATTGCCCTTCCCACTGTCTGTGATTGGAGAC
GAGGATCGATACCGCTTTCACAATACCGAACTCAGTGAATATATTGAGAA
CGCCATTCATTTGATGAGTATTGATGAGGACAAGAAATCATTCTCGCCTA
CACCCATGACACCAAATCCGAAGCGCGGTTCGAAACAGCTCACTCAAAAG
TTCATGCCAGGATCTCATGGTGGCATAGGCGGCGGGAACGCCGCTGAGAT
AGAGCTCTCAAGAAATGCGCTCTTCTTTACGTTGGAGGAGATGAAAAGAA
GAGAGCTGGGCATTGAGTTTGGTGGTGACCTACTTCCGAAAGAATACACG
TATAACATTGAACCGAGAAATCCACATCCTTGGTTTTCGCGCCACAATAT
CATTAAGGCTATTTCCGGCGGTGAGCAGCCTCGCGAAATTAAGAGCATAC
ACGATCTTCATGAAACTGCGATCCGGAGATACAACAAATTCAAGAATTGG
AGACCCATGTCGTTAGACCATCTCAAAGACTCGTTGCTCGCTCGTGTGGA
CTAA
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protein sequence of Gvermi7072.t1

>Gvermi7072.t1 ID=Gvermi7072.t1|Name=Gvermi7072.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=268bp
MNYEEGDEIYLFGFSRGAYTVRSLAGMMHESGLLYREHLDNVKEAYELYR
DNDDVDSAIAKEFRAKYARRVPIKLLMCFDTVGALGLPPGLPFPLSVIGD
EDRYRFHNTELSEYIENAIHLMSIDEDKKSFSPTPMTPNPKRGSKQLTQK
FMPGSHGGIGGGNAAEIELSRNALFFTLEEMKRRELGIEFGGDLLPKEYT
YNIEPRNPHPWFSRHNIIKAISGGEQPREIKSIHDLHETAIRRYNKFKNW
RPMSLDHLKDSLLARVD*
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mRNA from alignment at ScGOVlb_24229:1448379..1449182-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7072.t1 ID=Gvermi7072.t1|Name=Gvermi7072.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=804bp|location=Sequence derived from alignment at ScGOVlb_24229:1448379..1449182- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTATGAGGAAGGAGATGAAATATACCTCTTCGGCTTCTCACGCGG
CGCCTACACAGTGCGTTCGCTGGCCGGTATGATGCATGAGTCCGGCCTCT
TGTACAGAGAACACCTCGACAACGTCAAAGAGGCGTACGAGTTGTACCGT
GACAACGACGACGTCGATTCCGCGATTGCGAAAGAATTTCGTGCCAAGTA
CGCCAGAAGAGTTCCTATCAAGTTGCTTATGTGCTTTGACACGGTCGGAG
CGTTGGGACTGCCGCCAGGATTGCCCTTCCCACTGTCTGTGATTGGAGAC
GAGGATCGATACCGCTTTCACAATACCGAACTCAGTGAATATATTGAGAA
CGCCATTCATTTGATGAGTATTGATGAGGACAAGAAATCATTCTCGCCTA
CACCCATGACACCAAATCCGAAGCGCGGTTCGAAACAGCTCACTCAAAAG
TTCATGCCAGGATCTCATGGTGGCATAGGCGGCGGGAACGCCGCTGAGAT
AGAGCTCTCAAGAAATGCGCTCTTCTTTACGTTGGAGGAGATGAAAAGAA
GAGAGCTGGGCATTGAGTTTGGTGGTGACCTACTTCCGAAAGAATACACG
TATAACATTGAACCGAGAAATCCACATCCTTGGTTTTCGCGCCACAATAT
CATTAAGGCTATTTCCGGCGGTGAGCAGCCTCGCGAAATTAAGAGCATAC
ACGATCTTCATGAAACTGCGATCCGGAGATACAACAAATTCAAGAATTGG
AGACCCATGTCGTTAGACCATCTCAAAGACTCGTTGCTCGCTCGTGTGGA
CTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1448379..1449182-

>Gvermi7072.t1 ID=Gvermi7072.t1|Name=Gvermi7072.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=804bp|location=Sequence derived from alignment at ScGOVlb_24229:1448379..1449182- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTATGAGGAAGGAGATGAAATATACCTCTTCGGCTTCTCACGCGG
CGCCTACACAGTGCGTTCGCTGGCCGGTATGATGCATGAGTCCGGCCTCT
TGTACAGAGAACACCTCGACAACGTCAAAGAGGCGTACGAGTTGTACCGT
GACAACGACGACGTCGATTCCGCGATTGCGAAAGAATTTCGTGCCAAGTA
CGCCAGAAGAGTTCCTATCAAGTTGCTTATGTGCTTTGACACGGTCGGAG
CGTTGGGACTGCCGCCAGGATTGCCCTTCCCACTGTCTGTGATTGGAGAC
GAGGATCGATACCGCTTTCACAATACCGAACTCAGTGAATATATTGAGAA
CGCCATTCATTTGATGAGTATTGATGAGGACAAGAAATCATTCTCGCCTA
CACCCATGACACCAAATCCGAAGCGCGGTTCGAAACAGCTCACTCAAAAG
TTCATGCCAGGATCTCATGGTGGCATAGGCGGCGGGAACGCCGCTGAGAT
AGAGCTCTCAAGAAATGCGCTCTTCTTTACGTTGGAGGAGATGAAAAGAA
GAGAGCTGGGCATTGAGTTTGGTGGTGACCTACTTCCGAAAGAATACACG
TATAACATTGAACCGAGAAATCCACATCCTTGGTTTTCGCGCCACAATAT
CATTAAGGCTATTTCCGGCGGTGAGCAGCCTCGCGAAATTAAGAGCATAC
ACGATCTTCATGAAACTGCGATCCGGAGATACAACAAATTCAAGAATTGG
AGACCCATGTCGTTAGACCATCTCAAAGACTCGTTGCTCGCTCGTGTGGA
CTAA
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