Gvermi6917.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6917.t1
Unique NameGvermi6917.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length764
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:459442..461733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708884.1
PFAMsNa_H_Exchanger,TrkA_N
Max annot lvl2759|Eukaryota
Evalue1.61e-229
EggNOG OGsCOG0475@1|root,KOG1650@2759|Eukaryota
Descriptionsolute:proton antiporter activity
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6917Gvermi6917Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 459442..461733 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6917.t1.stop1Gvermi6917.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 459442..459444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6917.t1.CDS1Gvermi6917.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 459442..461733 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6917.t1.exon1Gvermi6917.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 459442..461733 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6917.t1.start1Gvermi6917.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 461731..461733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6917.t1Gvermi6917.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 459442..461733 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6917.t1 ID=Gvermi6917.t1|Name=Gvermi6917.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=764bp
LAVAAIAAHVLRPPPSRAFQPPDLSSSPAVPAAFTSRRIAVASAIAVTPA
ASPSKDQQPDSSAKQSDTHRDFLATLPARIDRLRSSLLSLLHHSHDSHQH
AVNDALVLLIATVIIIPLARRLGISPILGFLAAGVALGPNGFALVNDVRT
TKALAELGVVFFLFEMGLELSTSKLKSLRADVFGLGTAQFFVTGAIITAA
AIAAGITSQAAIIVGAALALSSSAFVLQLLSERGEVGTRFGRAAFGILLF
QDLVVVPVLVLIPLLAGSGAPAAVLRAVSIASVKAVLALAFIIFMGNNAL
QPLFRFVARARSPEAFIAVILLTVLGTSSLTQMLGLSDTLGAFLAGVMLA
ETKFRHQVEADIQPFRGLLLGLFFMTVGFSIDLNLAWANMSKVISLVSGL
LAIKASVIAAAGVAFGLSVGSALRTGLLLSQGGEFAFVIFGLGLSVGVLP
TDLSQLLLLVVAISMAVTPLLAAAGRQISSQLEKKRGLIGVRMEDADTAD
ARDFVMVAGWGRVGQSVCEMLDAKLVRYMAFDMSPTRVIDARNKGLPVFF
GDASRPEVLRVAGVERARAVVVTLDDPEQALRAVQNIRREFEEVKVFCRA
RDAKHQKLLQAAGATAIVPELLEASLLLGGAVLLDYGTPLDEVNSLVEEA
RSENLSEIGVADDVTATIGSIFRESRSRTLHEQQPKSSKAEEELKEEDES
EEPELLPVESDVKSEDIPLGSTPKDDTEDIYEPAEQLSVPSEDGVAQGKK
AVVVEDLESDSVR*
back to top

spliced messenger RNA

>Gvermi6917.t1 ID=Gvermi6917.t1|Name=Gvermi6917.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2292bp|location=Sequence derived from alignment at ScGOVlb_24229:459442..461733- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGCCGTGGCCGCCATCGCCGCTCACGTCCTGCGTCCGCCGCCTTCGCG
CGCCTTCCAGCCCCCCGATTTGTCCTCGTCCCCCGCTGTGCCAGCCGCCT
TTACATCGAGACGCATCGCCGTTGCGAGCGCCATCGCCGTTACCCCGGCC
GCATCACCTTCTAAAGACCAACAACCCGACTCGTCCGCCAAGCAATCTGA
CACTCATCGCGACTTTCTCGCCACCCTGCCGGCCCGAATCGACCGCCTTC
GCTCTTCGTTACTGTCCTTGCTTCACCACTCTCATGATTCCCATCAACAT
GCAGTTAACGATGCGCTCGTGCTACTCATCGCCACAGTCATCATCATCCC
GCTCGCGCGCCGCCTCGGCATTTCACCTATTCTTGGCTTCCTAGCTGCCG
GAGTTGCCTTGGGGCCGAATGGCTTCGCCCTCGTCAACGATGTACGCACA
ACCAAGGCCCTTGCCGAACTCGGTGTCGTCTTCTTTCTCTTCGAGATGGG
TCTCGAGCTCTCTACGTCCAAGCTCAAGTCTCTCCGCGCGGATGTGTTCG
GCCTAGGCACCGCCCAGTTCTTTGTCACGGGCGCCATAATCACCGCCGCC
GCTATCGCTGCGGGCATCACATCTCAAGCCGCCATCATTGTCGGCGCGGC
CCTGGCCTTGAGCTCCAGCGCGTTTGTGCTCCAGCTGCTCTCTGAACGTG
GTGAAGTTGGCACTCGCTTCGGCCGCGCCGCGTTCGGTATCCTCTTGTTT
CAAGACCTCGTAGTCGTCCCTGTTCTTGTCCTCATCCCTCTTCTAGCTGG
ATCGGGAGCACCGGCAGCCGTTTTGCGCGCCGTCAGTATTGCAAGTGTCA
AAGCAGTTCTGGCTCTCGCTTTCATTATTTTCATGGGCAACAACGCTTTG
CAACCTCTCTTTCGGTTTGTTGCCCGCGCTAGGAGTCCGGAAGCCTTCAT
CGCAGTGATCCTTCTCACCGTTCTCGGTACTTCTTCACTGACACAGATGC
TTGGATTGAGCGATACTCTTGGAGCTTTTTTGGCGGGCGTCATGCTTGCG
GAAACCAAGTTCAGGCATCAAGTTGAGGCGGATATTCAGCCGTTCCGCGG
ACTTCTACTCGGCTTATTCTTCATGACTGTTGGCTTTTCTATTGACCTTA
ATCTGGCATGGGCCAATATGAGCAAGGTGATTTCTCTGGTATCGGGGTTG
TTGGCTATTAAGGCTAGCGTTATCGCCGCCGCTGGTGTTGCATTTGGTCT
CAGTGTCGGGTCTGCTCTACGCACTGGATTGCTTCTTTCTCAAGGGGGAG
AGTTTGCATTTGTTATATTCGGGCTTGGGCTATCAGTTGGCGTGCTGCCT
ACCGACTTGAGTCAGCTGTTGTTGCTTGTCGTGGCTATATCTATGGCAGT
GACACCGCTTCTAGCTGCAGCTGGGCGGCAGATATCTTCTCAACTGGAGA
AAAAGAGAGGTCTTATCGGTGTACGTATGGAGGACGCTGACACTGCTGAT
GCTCGCGACTTCGTCATGGTCGCTGGCTGGGGCCGTGTTGGTCAGTCCGT
TTGTGAAATGCTCGATGCCAAACTTGTGAGATATATGGCATTTGATATGT
CTCCAACACGAGTCATTGATGCACGTAATAAGGGCTTGCCAGTGTTCTTT
GGCGACGCCTCTCGTCCTGAGGTTTTAAGAGTTGCTGGCGTTGAAAGAGC
CCGTGCTGTCGTCGTCACGCTTGACGATCCGGAACAAGCGTTGAGAGCCG
TTCAAAACATTCGCCGAGAGTTTGAAGAAGTTAAGGTGTTTTGTCGCGCT
CGCGATGCCAAACATCAGAAACTGCTGCAGGCGGCAGGTGCCACGGCTAT
TGTTCCTGAGCTACTTGAGGCTTCATTACTTTTAGGTGGAGCTGTTCTGT
TAGACTATGGAACCCCTCTTGATGAAGTTAACTCCTTGGTAGAGGAGGCC
AGATCTGAGAATCTCTCGGAGATAGGTGTAGCGGACGATGTGACTGCCAC
CATTGGGTCAATTTTCAGAGAATCACGATCGCGCACGCTTCATGAACAAC
AGCCAAAGTCTTCGAAAGCTGAAGAAGAATTAAAAGAAGAGGATGAGAGC
GAAGAACCGGAGCTCCTACCCGTTGAGTCTGATGTGAAGAGTGAGGATAT
CCCACTCGGCTCAACCCCTAAGGACGACACAGAGGACATCTACGAGCCGG
CAGAACAACTAAGCGTGCCATCAGAAGACGGAGTCGCGCAAGGGAAGAAG
GCAGTTGTTGTTGAAGATTTGGAATCAGATTCTGTGAGGTAG
back to top

protein sequence of Gvermi6917.t1

>Gvermi6917.t1 ID=Gvermi6917.t1|Name=Gvermi6917.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=764bp
LAVAAIAAHVLRPPPSRAFQPPDLSSSPAVPAAFTSRRIAVASAIAVTPA
ASPSKDQQPDSSAKQSDTHRDFLATLPARIDRLRSSLLSLLHHSHDSHQH
AVNDALVLLIATVIIIPLARRLGISPILGFLAAGVALGPNGFALVNDVRT
TKALAELGVVFFLFEMGLELSTSKLKSLRADVFGLGTAQFFVTGAIITAA
AIAAGITSQAAIIVGAALALSSSAFVLQLLSERGEVGTRFGRAAFGILLF
QDLVVVPVLVLIPLLAGSGAPAAVLRAVSIASVKAVLALAFIIFMGNNAL
QPLFRFVARARSPEAFIAVILLTVLGTSSLTQMLGLSDTLGAFLAGVMLA
ETKFRHQVEADIQPFRGLLLGLFFMTVGFSIDLNLAWANMSKVISLVSGL
LAIKASVIAAAGVAFGLSVGSALRTGLLLSQGGEFAFVIFGLGLSVGVLP
TDLSQLLLLVVAISMAVTPLLAAAGRQISSQLEKKRGLIGVRMEDADTAD
ARDFVMVAGWGRVGQSVCEMLDAKLVRYMAFDMSPTRVIDARNKGLPVFF
GDASRPEVLRVAGVERARAVVVTLDDPEQALRAVQNIRREFEEVKVFCRA
RDAKHQKLLQAAGATAIVPELLEASLLLGGAVLLDYGTPLDEVNSLVEEA
RSENLSEIGVADDVTATIGSIFRESRSRTLHEQQPKSSKAEEELKEEDES
EEPELLPVESDVKSEDIPLGSTPKDDTEDIYEPAEQLSVPSEDGVAQGKK
AVVVEDLESDSVR*
back to top

mRNA from alignment at ScGOVlb_24229:459442..461733-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6917.t1 ID=Gvermi6917.t1|Name=Gvermi6917.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2292bp|location=Sequence derived from alignment at ScGOVlb_24229:459442..461733- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGCCGTGGCCGCCATCGCCGCTCACGTCCTGCGTCCGCCGCCTTCGCG
CGCCTTCCAGCCCCCCGATTTGTCCTCGTCCCCCGCTGTGCCAGCCGCCT
TTACATCGAGACGCATCGCCGTTGCGAGCGCCATCGCCGTTACCCCGGCC
GCATCACCTTCTAAAGACCAACAACCCGACTCGTCCGCCAAGCAATCTGA
CACTCATCGCGACTTTCTCGCCACCCTGCCGGCCCGAATCGACCGCCTTC
GCTCTTCGTTACTGTCCTTGCTTCACCACTCTCATGATTCCCATCAACAT
GCAGTTAACGATGCGCTCGTGCTACTCATCGCCACAGTCATCATCATCCC
GCTCGCGCGCCGCCTCGGCATTTCACCTATTCTTGGCTTCCTAGCTGCCG
GAGTTGCCTTGGGGCCGAATGGCTTCGCCCTCGTCAACGATGTACGCACA
ACCAAGGCCCTTGCCGAACTCGGTGTCGTCTTCTTTCTCTTCGAGATGGG
TCTCGAGCTCTCTACGTCCAAGCTCAAGTCTCTCCGCGCGGATGTGTTCG
GCCTAGGCACCGCCCAGTTCTTTGTCACGGGCGCCATAATCACCGCCGCC
GCTATCGCTGCGGGCATCACATCTCAAGCCGCCATCATTGTCGGCGCGGC
CCTGGCCTTGAGCTCCAGCGCGTTTGTGCTCCAGCTGCTCTCTGAACGTG
GTGAAGTTGGCACTCGCTTCGGCCGCGCCGCGTTCGGTATCCTCTTGTTT
CAAGACCTCGTAGTCGTCCCTGTTCTTGTCCTCATCCCTCTTCTAGCTGG
ATCGGGAGCACCGGCAGCCGTTTTGCGCGCCGTCAGTATTGCAAGTGTCA
AAGCAGTTCTGGCTCTCGCTTTCATTATTTTCATGGGCAACAACGCTTTG
CAACCTCTCTTTCGGTTTGTTGCCCGCGCTAGGAGTCCGGAAGCCTTCAT
CGCAGTGATCCTTCTCACCGTTCTCGGTACTTCTTCACTGACACAGATGC
TTGGATTGAGCGATACTCTTGGAGCTTTTTTGGCGGGCGTCATGCTTGCG
GAAACCAAGTTCAGGCATCAAGTTGAGGCGGATATTCAGCCGTTCCGCGG
ACTTCTACTCGGCTTATTCTTCATGACTGTTGGCTTTTCTATTGACCTTA
ATCTGGCATGGGCCAATATGAGCAAGGTGATTTCTCTGGTATCGGGGTTG
TTGGCTATTAAGGCTAGCGTTATCGCCGCCGCTGGTGTTGCATTTGGTCT
CAGTGTCGGGTCTGCTCTACGCACTGGATTGCTTCTTTCTCAAGGGGGAG
AGTTTGCATTTGTTATATTCGGGCTTGGGCTATCAGTTGGCGTGCTGCCT
ACCGACTTGAGTCAGCTGTTGTTGCTTGTCGTGGCTATATCTATGGCAGT
GACACCGCTTCTAGCTGCAGCTGGGCGGCAGATATCTTCTCAACTGGAGA
AAAAGAGAGGTCTTATCGGTGTACGTATGGAGGACGCTGACACTGCTGAT
GCTCGCGACTTCGTCATGGTCGCTGGCTGGGGCCGTGTTGGTCAGTCCGT
TTGTGAAATGCTCGATGCCAAACTTGTGAGATATATGGCATTTGATATGT
CTCCAACACGAGTCATTGATGCACGTAATAAGGGCTTGCCAGTGTTCTTT
GGCGACGCCTCTCGTCCTGAGGTTTTAAGAGTTGCTGGCGTTGAAAGAGC
CCGTGCTGTCGTCGTCACGCTTGACGATCCGGAACAAGCGTTGAGAGCCG
TTCAAAACATTCGCCGAGAGTTTGAAGAAGTTAAGGTGTTTTGTCGCGCT
CGCGATGCCAAACATCAGAAACTGCTGCAGGCGGCAGGTGCCACGGCTAT
TGTTCCTGAGCTACTTGAGGCTTCATTACTTTTAGGTGGAGCTGTTCTGT
TAGACTATGGAACCCCTCTTGATGAAGTTAACTCCTTGGTAGAGGAGGCC
AGATCTGAGAATCTCTCGGAGATAGGTGTAGCGGACGATGTGACTGCCAC
CATTGGGTCAATTTTCAGAGAATCACGATCGCGCACGCTTCATGAACAAC
AGCCAAAGTCTTCGAAAGCTGAAGAAGAATTAAAAGAAGAGGATGAGAGC
GAAGAACCGGAGCTCCTACCCGTTGAGTCTGATGTGAAGAGTGAGGATAT
CCCACTCGGCTCAACCCCTAAGGACGACACAGAGGACATCTACGAGCCGG
CAGAACAACTAAGCGTGCCATCAGAAGACGGAGTCGCGCAAGGGAAGAAG
GCAGTTGTTGTTGAAGATTTGGAATCAGATTCTGTGAGGTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:459442..461733-

>Gvermi6917.t1 ID=Gvermi6917.t1|Name=Gvermi6917.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2292bp|location=Sequence derived from alignment at ScGOVlb_24229:459442..461733- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGCCGTGGCCGCCATCGCCGCTCACGTCCTGCGTCCGCCGCCTTCGCG
CGCCTTCCAGCCCCCCGATTTGTCCTCGTCCCCCGCTGTGCCAGCCGCCT
TTACATCGAGACGCATCGCCGTTGCGAGCGCCATCGCCGTTACCCCGGCC
GCATCACCTTCTAAAGACCAACAACCCGACTCGTCCGCCAAGCAATCTGA
CACTCATCGCGACTTTCTCGCCACCCTGCCGGCCCGAATCGACCGCCTTC
GCTCTTCGTTACTGTCCTTGCTTCACCACTCTCATGATTCCCATCAACAT
GCAGTTAACGATGCGCTCGTGCTACTCATCGCCACAGTCATCATCATCCC
GCTCGCGCGCCGCCTCGGCATTTCACCTATTCTTGGCTTCCTAGCTGCCG
GAGTTGCCTTGGGGCCGAATGGCTTCGCCCTCGTCAACGATGTACGCACA
ACCAAGGCCCTTGCCGAACTCGGTGTCGTCTTCTTTCTCTTCGAGATGGG
TCTCGAGCTCTCTACGTCCAAGCTCAAGTCTCTCCGCGCGGATGTGTTCG
GCCTAGGCACCGCCCAGTTCTTTGTCACGGGCGCCATAATCACCGCCGCC
GCTATCGCTGCGGGCATCACATCTCAAGCCGCCATCATTGTCGGCGCGGC
CCTGGCCTTGAGCTCCAGCGCGTTTGTGCTCCAGCTGCTCTCTGAACGTG
GTGAAGTTGGCACTCGCTTCGGCCGCGCCGCGTTCGGTATCCTCTTGTTT
CAAGACCTCGTAGTCGTCCCTGTTCTTGTCCTCATCCCTCTTCTAGCTGG
ATCGGGAGCACCGGCAGCCGTTTTGCGCGCCGTCAGTATTGCAAGTGTCA
AAGCAGTTCTGGCTCTCGCTTTCATTATTTTCATGGGCAACAACGCTTTG
CAACCTCTCTTTCGGTTTGTTGCCCGCGCTAGGAGTCCGGAAGCCTTCAT
CGCAGTGATCCTTCTCACCGTTCTCGGTACTTCTTCACTGACACAGATGC
TTGGATTGAGCGATACTCTTGGAGCTTTTTTGGCGGGCGTCATGCTTGCG
GAAACCAAGTTCAGGCATCAAGTTGAGGCGGATATTCAGCCGTTCCGCGG
ACTTCTACTCGGCTTATTCTTCATGACTGTTGGCTTTTCTATTGACCTTA
ATCTGGCATGGGCCAATATGAGCAAGGTGATTTCTCTGGTATCGGGGTTG
TTGGCTATTAAGGCTAGCGTTATCGCCGCCGCTGGTGTTGCATTTGGTCT
CAGTGTCGGGTCTGCTCTACGCACTGGATTGCTTCTTTCTCAAGGGGGAG
AGTTTGCATTTGTTATATTCGGGCTTGGGCTATCAGTTGGCGTGCTGCCT
ACCGACTTGAGTCAGCTGTTGTTGCTTGTCGTGGCTATATCTATGGCAGT
GACACCGCTTCTAGCTGCAGCTGGGCGGCAGATATCTTCTCAACTGGAGA
AAAAGAGAGGTCTTATCGGTGTACGTATGGAGGACGCTGACACTGCTGAT
GCTCGCGACTTCGTCATGGTCGCTGGCTGGGGCCGTGTTGGTCAGTCCGT
TTGTGAAATGCTCGATGCCAAACTTGTGAGATATATGGCATTTGATATGT
CTCCAACACGAGTCATTGATGCACGTAATAAGGGCTTGCCAGTGTTCTTT
GGCGACGCCTCTCGTCCTGAGGTTTTAAGAGTTGCTGGCGTTGAAAGAGC
CCGTGCTGTCGTCGTCACGCTTGACGATCCGGAACAAGCGTTGAGAGCCG
TTCAAAACATTCGCCGAGAGTTTGAAGAAGTTAAGGTGTTTTGTCGCGCT
CGCGATGCCAAACATCAGAAACTGCTGCAGGCGGCAGGTGCCACGGCTAT
TGTTCCTGAGCTACTTGAGGCTTCATTACTTTTAGGTGGAGCTGTTCTGT
TAGACTATGGAACCCCTCTTGATGAAGTTAACTCCTTGGTAGAGGAGGCC
AGATCTGAGAATCTCTCGGAGATAGGTGTAGCGGACGATGTGACTGCCAC
CATTGGGTCAATTTTCAGAGAATCACGATCGCGCACGCTTCATGAACAAC
AGCCAAAGTCTTCGAAAGCTGAAGAAGAATTAAAAGAAGAGGATGAGAGC
GAAGAACCGGAGCTCCTACCCGTTGAGTCTGATGTGAAGAGTGAGGATAT
CCCACTCGGCTCAACCCCTAAGGACGACACAGAGGACATCTACGAGCCGG
CAGAACAACTAAGCGTGCCATCAGAAGACGGAGTCGCGCAAGGGAAGAAG
GCAGTTGTTGTTGAAGATTTGGAATCAGATTCTGTGAGGTAG
back to top