Gvermi4233.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4233.t1
Unique NameGvermi4233.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length441
Homology
BLAST of Gvermi4233.t1 vs. uniprot
Match: A0A2V3J1B1_9FLOR (High mobility group B protein 13 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1B1_9FLOR)

HSP 1 Score: 351 bits (901), Expect = 1.760e-114
Identity = 215/399 (53.88%), Postives = 269/399 (67.42%), Query Frame = 0
Query:   55 AEPVEETLAV---HVDIAHITSQLEGTKISSD------SSPAGLPETTVNPFGGTVPPSAS----FALPKRPLTAYQQFCKNQRDQICQQHPGAKFAEINSLLGAAWKALSPEQRSEFEQSVAEDRHRYDQEMTQYKEQQQQLEKERMAIEFYEKELRVQKXXXXXXXXXXEQKDAVKNV-PAPPKQARSAYNFFVASRFKETGGNSVFGLSAQIAKEWKALQGSRNKKGKALVASFEKMAAEDEQRYRAETEEHAAALAEXXXXXXXXXXXXXXXXXEAYETNLKEKEDAQAFRKLQAELKMAQKQEKKKLRXXXXXXXXXXXAEPKRPKNAYAIFFSKNAAEVSEYIKETNVEHTMAKEVAARWKALSDAEKEPYLKEAENDRVRYRNEMEAFNATQ 439
            A+P EET+       DI  IT  L+ T I++D      +  A LP    NPFGG +  SAS     ALPKRPLTAYQQFCK  RD ICQQ P A F+++NS LG  W+ALS E++ +++Q V EDR RYD+EM    EQ+ Q EKER+AI+FY  +L+V+K          +   +  N  PA PKQ RSAYNFF+A+RFKE  GN  FG +AQIA+EWK LQ SR KK K L+A+F KM A+DEQRYR E E++   L +                 EAYE +L++KEDAQAFRK+Q +LK  +++ +KK R  XXXXXXXX AEPKRPKNAYAIFFSK A EVSEYI++ +VEH+MAKE+AARWKALSD EK+PY+ EAE DR RY+ EM AF++ Q
Sbjct:   33 AKPQEETVVETPPKPDIDQITEHLQQTTIANDHLETQPAPSAQLPNA--NPFGGAILSSASAAAPLALPKRPLTAYQQFCKQNRDAICQQIPKASFSQVNSKLGQQWRALSSEEQQQYQQQVMEDRQRYDREMHHINEQRTQAEKERLAIDFYHHQLKVEKALEMYEKHLEQHSPSSDNTAPAAPKQPRSAYNFFMAARFKEIDGNIGFGATAQIAEEWKQLQSSRKKKDKTLLANFNKMVADDEQRYRVEMEQYQTVLDQHTAKKAKESEQFKQRALEAYEASLRDKEDAQAFRKMQTQLKAVERELRKKAREDXXXXXXXXAAEPKRPKNAYAIFFSKLAPEVSEYIRQHDVEHSMAKEIAARWKALSDREKKPYVLEAEKDRERYQKEMNAFSSAQ 429          
BLAST of Gvermi4233.t1 vs. uniprot
Match: A0A8C3ZBP1_9TELE (Transcription factor A, mitochondrial-like n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZBP1_9TELE)

HSP 1 Score: 80.9 bits (198), Expect = 1.930e-13
Identity = 58/189 (30.69%), Postives = 93/189 (49.21%), Query Frame = 0
Query:  110 PKRPLTAYQQFCKNQRDQICQQHPGAKFAEINSLLGAAWKALSPEQRSEFEQSVAEDRHRYDQEMTQYKEQQQQLEKERMAIEFYEKELRVQKXXXXXXXXXXEQKDAVKNVPAPPKQARSAYNFFVASRFKETGGNSVFGLSAQIAKEWKALQGSRNKKGKALVASFEKMAAEDEQRYRAET---EEH 295
            PKRPLT Y +F K Q+  +  QHP  K  EI   +   W+AL+PEQ+  F+Q+  ++R RY   M +Y  Q   L   + A    EK L++ +           +K         PK+ R+A+N F+A  F+E  G ++ G    +  +WK L  ++ +        + ++A +D+ RY+ E    EEH
Sbjct:   48 PKRPLTGYMRFVKQQQPVVSGQHPDVKVVEIVRKIAQQWRALTPEQKQPFQQASLQERERYKAAMEEYHAQ---LTPTQSAAIMSEKRLKMARRRAL-------RKKRELTSLGKPKRPRTAFNIFMAEHFEEAKGTTMQGKMKSLMDDWKKLLANQKQ-------VYVQLAEDDKIRYKNEMKAWEEH 219          
BLAST of Gvermi4233.t1 vs. uniprot
Match: W5MHD6_LEPOC (Transcription factor A, mitochondrial n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5MHD6_LEPOC)

HSP 1 Score: 77.0 bits (188), Expect = 4.680e-12
Identity = 57/189 (30.16%), Postives = 93/189 (49.21%), Query Frame = 0
Query:  110 PKRPLTAYQQFCKNQRDQICQQHPGAKFAEINSLLGAAWKALSPEQRSEFEQSVAEDRHRYDQEMTQYKEQQQQLEKERMAIEFYEKELRVQKXXXXXXXXXXEQKDAVKNVPAPPKQARSAYNFFVASRFKETGGNSVFGLSAQIAKEWKALQGSRNKKGKALVASFEKMAAEDEQRYRAET---EEH 295
            PKRPLT Y ++ + QR    +Q+P  K  +I   +   WKALS E++  F+++   DR +Y +EM ++K Q    +   +  E  EK  R +            +K     +   PK+ RSA+N F+A  F+E  G S+ G    +  +W+ L  S+ +        + ++A +D+ RYR E    EEH
Sbjct:   48 PKRPLTGYIRYIRQQRPVFIKQYPDVKNVDITRKIAQEWKALSSEEKRPFQEAAVADREQYKEEMMKFKAQLTPAQTAALEEERREKIARRRTI----------RKKRELTMLGKPKRPRSAFNIFMAEHFEEAKGVSMQGKMKSLFDDWRNLHASQKQ-------VYMQLAEDDKIRYRNEIKSWEEH 219          
BLAST of Gvermi4233.t1 vs. uniprot
Match: UPI001C0A3F47 (transcription factor A, mitochondrial n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C0A3F47)

HSP 1 Score: 74.7 bits (182), Expect = 2.530e-11
Identity = 57/189 (30.16%), Postives = 92/189 (48.68%), Query Frame = 0
Query:  110 PKRPLTAYQQFCKNQRDQICQQHPGAKFAEINSLLGAAWKALSPEQRSEFEQSVAEDRHRYDQEMTQYKEQQQQLEKERMAIEFYEKELRVQKXXXXXXXXXXEQKDAVKNVPAPPKQARSAYNFFVASRFKETGGNSVFGLSAQIAKEWKALQGSRNKKGKALVASFEKMAAEDEQRYRAET---EEH 295
            PKRPLT Y +F K QR Q+  Q+P  K  E+   +   W+ L+PEQ+  FEQ+   +R++Y   M +Y   Q QL   + A    EK  +  K           +K    N    PK+ R+ +N F+A  F+E  G ++      + ++WK L  ++ +        + ++A +D+ RY+ E    EEH
Sbjct:   47 PKRPLTGYMRFVKEQRLQVITQNPDVKAVEVIKQIAERWRVLTPEQKRPFEQAALSERNQYKTIMERY---QAQLTPAQSAAMVEEKRQKRAKRKAI-------RKKRELNTLGKPKRPRTGFNIFMAEHFEEARGVTMQAKMKSLLEDWKNLYITQKQ-------VYLQLAEDDKVRYKNEIKTWEEH 218          
BLAST of Gvermi4233.t1 vs. uniprot
Match: A0A6J2V8H0_CHACN (transcription factor A, mitochondrial n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2V8H0_CHACN)

HSP 1 Score: 73.6 bits (179), Expect = 6.080e-11
Identity = 54/189 (28.57%), Postives = 96/189 (50.79%), Query Frame = 0
Query:  110 PKRPLTAYQQFCKNQRDQICQQHPGAKFAEINSLLGAAWKALSPEQRSEFEQSVAEDRHRYDQEMTQYKEQQQQLEKERMAIEFYEKELRVQKXXXXXXXXXXEQKDAVKNVPAPPKQARSAYNFFVASRFKETGGNSVFGLSAQIAKEWKALQGSRNKKGKALVASFEKMAAEDEQRYRAET---EEH 295
            PKRPLTAY ++ K Q+  I +Q+P  K  E+   +   W+ ++P+Q+  FE++   DR +Y + M ++   Q QL   + A    EK  ++ K           +K    N    PK+ R+A+N F++  F+E  G+++      + ++WK L  S+ +        + ++A +D+ RY+ E    EEH
Sbjct:   47 PKRPLTAYIRYVKEQQPIISRQNPDIKIVEVMRKIAQQWRVMTPDQKRPFEEASLADREQYKRAMERF---QAQLSPAQSAALAEEKRQKMAKRRAI-------RKKRELNSLGKPKRPRNAFNIFMSEHFEEAKGSTMQAKMKSLMEDWKGLYVSQKQ-------IYIQLAEDDKVRYKNEMKSWEEH 218          
BLAST of Gvermi4233.t1 vs. uniprot
Match: A0A7L4HUW5_SCOUM (TFAM factor (Fragment) n=1 Tax=Scopus umbretta TaxID=33581 RepID=A0A7L4HUW5_SCOUM)

HSP 1 Score: 71.2 bits (173), Expect = 1.760e-10
Identity = 56/192 (29.17%), Postives = 88/192 (45.83%), Query Frame = 0
Query:  110 PKRPLTAYQQFCKNQRDQICQQHPGAKFAEINSLLGAAWKALSPEQRSEFEQSVAEDRHRYDQEMTQYKEQQQQLEKERMAIEFYEKELRVQKXXXXXXXXXXEQKDAVKNVPAPPKQARSAYNFFVASRFKETGGNSVFGLSAQIAKEWKALQGSRNKKGKALVASFEKMAAEDEQRYRAETEEHAAALAE 301
            PKRPLTAY +F K  R    Q++P     E+   +  AWK L   Q+  +E++   D  RY++++  YK Q   L   + A    E+  R+ K                  V   PK+ RS +N FV+  F+E+ G S  G   Q+   W+ L GS+ +        + ++A +D+ RY  E +   A + E
Sbjct:    9 PKRPLTAYFRFLKENRSAFRQKNPEMSNVELVKRIAGAWKELPASQKQVYEEARKADWQRYEEQLATYKAQ---LTPAQAAALKEERRKRLAKRRSFRAKREL-------TVLGKPKRPRSGFNIFVSENFQESEGLSPMGKMKQLFDTWRKLSGSQKQ-------PYLQLAEDDKVRYENEMKSWEAKMIE 183          
BLAST of Gvermi4233.t1 vs. uniprot
Match: A0A6P3VJ43_CLUHA (transcription factor A, mitochondrial isoform X1 n=2 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3VJ43_CLUHA)

HSP 1 Score: 71.6 bits (174), Expect = 2.740e-10
Identity = 56/200 (28.00%), Postives = 101/200 (50.50%), Query Frame = 0
Query:   92 TTVNPFGGTVPPSASFALPKRPLTAYQQFCKNQRDQICQQHPGAKFAEINSLLGAAWKALSPEQRSEFEQSVAEDRHRYDQEMTQYKEQQQQLEKERMAIEFYEKELRVQKXXXXXXXXXXEQKDAVKNVPAPPKQARSAYNFFVASRFKETGGNSVFGLSAQIAKEWKALQGSRNKKGKALVASFEKMAAEDEQRYRAE 291
            T   PF      +A+   PKRPLT Y +F K Q+ Q+ +Q+P AK  E+   +   W+ L+  Q+  FEQ+   DR++Y   M ++   Q QL  E+ A+   EK  +  K          ++K  + ++   PK+ R A+N F++  F+E  G+++      + ++WK L  ++ +        + ++A +D+ RY+ E
Sbjct:   34 TAAKPFS-----TAAGGPPKRPLTGYMRFVKEQQPQVTRQYPDAKAVEVIRKVAERWRGLTLIQKQPFEQAALVDRNQYKVTMQRF---QAQLTPEQSAVLVEEKRQKRAKRKNI------KKKRELTSL-GKPKRPRIAFNIFMSEHFEEARGDTMPAKMKSLLEDWKNLYMTQKQ-------VYVQLAEDDKVRYKTE 211          
BLAST of Gvermi4233.t1 vs. uniprot
Match: A0A0E9WXS0_ANGAN (Uncharacterized protein n=3 Tax=Anguilla anguilla TaxID=7936 RepID=A0A0E9WXS0_ANGAN)

HSP 1 Score: 71.2 bits (173), Expect = 3.570e-10
Identity = 55/189 (29.10%), Postives = 89/189 (47.09%), Query Frame = 0
Query:  110 PKRPLTAYQQFCKNQRDQICQQHPGAKFAEINSLLGAAWKALSPEQRSEFEQSVAEDRHRYDQEMTQYKEQQQQLEKERMAIEFYEKELRVQKXXXXXXXXXXEQKDAVKNVPAPPKQARSAYNFFVASRFKETGGNSVFGLSAQIAKEWKALQGSRNKKGKALVASFEKMAAEDEQRYRAET---EEH 295
            PKRPLT+Y +F K QR  + +Q+P  K  +I   +   W+ALSPEQ+  FE++   D  +Y  ++ +YK Q    +   +      KE R QK           +   +      PK+ RSA+N F A    +  G ++      +  +WK L  S+ +        + ++A +D+ RY+ E    EEH
Sbjct:   45 PKRPLTSYMRFVKQQRPLVVRQNPDLKLVDIVKRIAQHWRALSPEQKRPFEEASLADHAQYKMDIERYKSQLTPAQSAAL------KEERRQKMAKRRSIRHKRELTLL----GKPKRPRSAFNIFTAEHIPQARGTTMPAKLISVTDDWKRLHLSQKQ-------VYIQLAEDDQIRYKNEMKSWEEH 216          
BLAST of Gvermi4233.t1 vs. uniprot
Match: A0A0J8RKA3_COCIT (Non-histone chromosomal protein 6 n=1 Tax=Coccidioides immitis H538.4 TaxID=396776 RepID=A0A0J8RKA3_COCIT)

HSP 1 Score: 66.2 bits (160), Expect = 4.180e-10
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 0
Query:  110 PKRPLTAYQQFCKNQRDQICQQHPGAKFAEINSLLGAAWKALSPEQRSEFEQSVAEDRHRYDQEMTQY 177
            PKR L+AY  F K QR+ + +++PG  F ++  LLG  WKALS +QR+ +E+  A D  RY+ E   Y
Sbjct:    8 PKRGLSAYMFFAKEQRENVREENPGISFGQVGKLLGERWKALSDKQRAPYEEKAAADEKRYEDEKANY 75          
BLAST of Gvermi4233.t1 vs. uniprot
Match: A0A5A9PTN6_9TELE (Transcription factor A, mitochondrial n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PTN6_9TELE)

HSP 1 Score: 70.1 bits (170), Expect = 8.820e-10
Identity = 55/189 (29.10%), Postives = 92/189 (48.68%), Query Frame = 0
Query:  110 PKRPLTAYQQFCKNQRDQICQQHPGAKFAEINSLLGAAWKALSPEQRSEFEQSVAEDRHRYDQEMTQYKEQQQQLEKERMAIEFYEKELRVQKXXXXXXXXXXEQKDAVKNVPAPPKQARSAYNFFVASRFKETGGNSVFGLSAQIAKEWKALQGSRNKKGKALVASFEKMAAEDEQRYRAET---EEH 295
            PKRPLTAY +F K+ +    +Q+PG K  +I   +   W+ L+PEQ+  F++     R +Y   + +YK Q    +   +A E      R QK          ++ +++      PK+ RS +N F+A  F+E  G ++ G    +  +WK L    N   K +   + ++A +D+ RY+ E    EEH
Sbjct:   47 PKRPLTAYMKFMKDNQPTFVRQNPGIKNVDIVRKIAQQWRGLTPEQKQPFQEVSLAAREQYKLALQEYKAQLTPAQSAAIAEE------RKQKLAKRKAIRKKKELNSL----GKPKRPRSGFNIFMAEHFEEARGATMQGKMKSLTDDWKRL----NIPQKQI---YTQLAEDDKVRYKNEIKSWEEH 218          
The following BLAST results are available for this feature:
BLAST of Gvermi4233.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J1B1_9FLOR1.760e-11453.88High mobility group B protein 13 n=1 Tax=Gracilari... [more]
A0A8C3ZBP1_9TELE1.930e-1330.69Transcription factor A, mitochondrial-like n=2 Tax... [more]
W5MHD6_LEPOC4.680e-1230.16Transcription factor A, mitochondrial n=2 Tax=Lepi... [more]
UPI001C0A3F472.530e-1130.16transcription factor A, mitochondrial n=1 Tax=Alos... [more]
A0A6J2V8H0_CHACN6.080e-1128.57transcription factor A, mitochondrial n=1 Tax=Chan... [more]
A0A7L4HUW5_SCOUM1.760e-1029.17TFAM factor (Fragment) n=1 Tax=Scopus umbretta Tax... [more]
A0A6P3VJ43_CLUHA2.740e-1028.00transcription factor A, mitochondrial isoform X1 n... [more]
A0A0E9WXS0_ANGAN3.570e-1029.10Uncharacterized protein n=3 Tax=Anguilla anguilla ... [more]
A0A0J8RKA3_COCIT4.180e-1044.12Non-histone chromosomal protein 6 n=1 Tax=Coccidio... [more]
A0A5A9PTN6_9TELE8.820e-1029.10Transcription factor A, mitochondrial n=1 Tax=Trip... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 167..204
NoneNo IPR availableCOILSCoilCoilcoord: 334..365
NoneNo IPR availableCOILSCoilCoilcoord: 289..320
NoneNo IPR availableCOILSCoilCoilcoord: 418..438
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 345..366
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..33
NoneNo IPR availablePANTHERPTHR48112HIGH MOBILITY GROUP PROTEIN DSP1coord: 219..436
coord: 39..188
NoneNo IPR availableCDDcd00084HMG-boxcoord: 110..174
e-value: 8.61189E-16
score: 69.5699
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 367..433
e-value: 1.82295E-10
score: 54.5562
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 109..179
e-value: 7.9E-23
score: 91.8
coord: 366..437
e-value: 3.7E-11
score: 53.1
coord: 224..297
e-value: 1.3
score: 11.5
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 367..436
e-value: 2.9E-11
score: 43.6
coord: 110..178
e-value: 7.2E-20
score: 71.2
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 225..296
score: 8.785625
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 367..436
score: 16.048998
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 110..178
score: 18.649654
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 224..295
e-value: 2.8E-12
score: 48.7
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 364..440
e-value: 3.4E-17
score: 64.6
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 107..197
e-value: 7.9E-23
score: 82.7
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 109..183
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 218..302
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 360..438

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:853340..854662 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4233.t1Gvermi4233.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 853340..854662 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4233.t1 ID=Gvermi4233.t1|Name=Gvermi4233.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=441bp
MPPRTRARKPLANVPQNEPMPRPTRSTMKQQRPKRTPAEPAPAEPAPTEL
APPPAEPVEETLAVHVDIAHITSQLEGTKISSDSSPAGLPETTVNPFGGT
VPPSASFALPKRPLTAYQQFCKNQRDQICQQHPGAKFAEINSLLGAAWKA
LSPEQRSEFEQSVAEDRHRYDQEMTQYKEQQQQLEKERMAIEFYEKELRV
QKALEFYEKHLAEQKDAVKNVPAPPKQARSAYNFFVASRFKETGGNSVFG
LSAQIAKEWKALQGSRNKKGKALVASFEKMAAEDEQRYRAETEEHAAALA
EQAEQKAQEHEQFKKAAVEAYETNLKEKEDAQAFRKLQAELKMAQKQEKK
KLREEKKAAKEAKSAEPKRPKNAYAIFFSKNAAEVSEYIKETNVEHTMAK
EVAARWKALSDAEKEPYLKEAENDRVRYRNEMEAFNATQQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf