Gvermi7103.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7103.t1
Unique NameGvermi7103.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1706980..1708323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7103Gvermi7103Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1706980..1708323 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7103.t1.stop1Gvermi7103.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1706980..1706982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7103.t1.CDS1Gvermi7103.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1706980..1708323 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7103.t1.exon1Gvermi7103.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1706980..1708323 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7103.t1.start1Gvermi7103.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1708321..1708323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7103.t1Gvermi7103.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1706980..1708323 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7103.t1 ID=Gvermi7103.t1|Name=Gvermi7103.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=448bp
MDAVFQLLLFMGVFHGALQLDATELCAMPRRNRTFCGDATDIALGDDRVK
SSKPNQCRVGCQSFSHPDITMTTRSAKCAFDLCDLVQPFRTFDHGTRMCQ
PRAVCISACGEEPPGCVYSGTCREFTCFHDRNTGRPANFTRITYAGPRTI
VRVNDSVTSDKSPYDNSLDAVLISRDNCDGTYYRIDSKVCGESGDALLSV
DEEQEFVQCRNVCRNIQNDAVEIVRMRTSCDLCSSEAEKSVCIPQSECQA
SCEMPFTNVAGCVFTGTCKSMICVSGIDSKLPAVVAVTNDTGLGGVIVSV
DNSKAPTTLDPPVYAKYLEDIFVPDSRIEDNANDNEQVTTADHLEGPTAA
TEPEKVKTPKNATASFEVDVVKGPRNKTLEEPSNKTENGETSKWGWLGPI
VGLLGAFITALAALAAAYITRGTKVHRRKKDSPHRDVSLCDVDIDKL*
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spliced messenger RNA

>Gvermi7103.t1 ID=Gvermi7103.t1|Name=Gvermi7103.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at ScGOVlb_24229:1706980..1708323- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTGTTTTCCAATTGCTGTTATTCATGGGAGTGTTTCATGGAGC
TCTGCAACTCGATGCTACTGAGCTCTGCGCCATGCCTAGGCGCAACCGTA
CATTCTGCGGGGATGCTACGGACATTGCACTTGGCGACGATCGCGTCAAA
TCCTCGAAGCCCAATCAATGTCGCGTGGGTTGCCAGTCATTTTCACATCC
CGACATTACCATGACAACTCGGTCGGCCAAGTGCGCCTTCGATCTCTGCG
ATCTCGTGCAGCCGTTTCGTACGTTTGACCATGGTACGCGTATGTGTCAG
CCACGAGCAGTTTGCATTTCTGCTTGCGGCGAAGAGCCCCCAGGTTGCGT
GTACTCAGGCACGTGTCGCGAGTTCACATGCTTTCATGACAGGAACACAG
GGCGGCCGGCCAACTTCACCAGAATCACATATGCTGGACCTCGCACTATT
GTTCGCGTGAATGACTCCGTAACATCCGATAAATCTCCATATGACAACTC
ACTCGATGCGGTGCTGATATCCAGAGATAATTGCGATGGCACTTACTATC
GTATCGACAGTAAAGTCTGTGGGGAATCTGGAGACGCGTTGCTCTCGGTC
GATGAAGAGCAAGAATTCGTTCAATGTCGTAATGTTTGCCGAAATATCCA
GAACGATGCGGTAGAGATAGTGCGGATGAGGACGTCATGTGATCTGTGCA
GTTCGGAAGCTGAAAAGTCAGTTTGTATCCCTCAATCTGAATGCCAGGCT
AGTTGTGAAATGCCGTTCACGAATGTAGCAGGATGTGTTTTTACTGGTAC
TTGCAAGTCCATGATATGTGTGTCAGGAATTGATTCAAAATTACCGGCTG
TAGTAGCTGTCACTAATGATACAGGACTAGGGGGGGTCATTGTTTCCGTT
GATAACTCAAAAGCGCCCACAACATTGGATCCACCTGTATACGCGAAATA
CTTGGAGGATATTTTCGTACCAGACTCGAGGATTGAAGATAATGCGAATG
ATAACGAGCAAGTTACGACTGCAGACCATTTAGAGGGACCAACAGCTGCT
ACTGAACCGGAAAAAGTCAAAACACCTAAAAACGCAACTGCTTCCTTCGA
AGTAGACGTTGTCAAAGGACCCAGGAACAAAACTCTCGAAGAACCCAGCA
ACAAAACTGAGAACGGAGAAACGTCAAAATGGGGATGGCTTGGACCTATT
GTCGGATTACTGGGCGCCTTTATTACTGCTTTGGCGGCTCTGGCTGCAGC
CTACATTACTCGCGGGACAAAAGTACACAGGAGAAAGAAAGACTCTCCGC
ACAGAGATGTCAGCTTGTGCGATGTGGATATTGATAAATTGTGA
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protein sequence of Gvermi7103.t1

>Gvermi7103.t1 ID=Gvermi7103.t1|Name=Gvermi7103.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=448bp
MDAVFQLLLFMGVFHGALQLDATELCAMPRRNRTFCGDATDIALGDDRVK
SSKPNQCRVGCQSFSHPDITMTTRSAKCAFDLCDLVQPFRTFDHGTRMCQ
PRAVCISACGEEPPGCVYSGTCREFTCFHDRNTGRPANFTRITYAGPRTI
VRVNDSVTSDKSPYDNSLDAVLISRDNCDGTYYRIDSKVCGESGDALLSV
DEEQEFVQCRNVCRNIQNDAVEIVRMRTSCDLCSSEAEKSVCIPQSECQA
SCEMPFTNVAGCVFTGTCKSMICVSGIDSKLPAVVAVTNDTGLGGVIVSV
DNSKAPTTLDPPVYAKYLEDIFVPDSRIEDNANDNEQVTTADHLEGPTAA
TEPEKVKTPKNATASFEVDVVKGPRNKTLEEPSNKTENGETSKWGWLGPI
VGLLGAFITALAALAAAYITRGTKVHRRKKDSPHRDVSLCDVDIDKL*
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mRNA from alignment at ScGOVlb_24229:1706980..1708323-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7103.t1 ID=Gvermi7103.t1|Name=Gvermi7103.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at ScGOVlb_24229:1706980..1708323- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCTGTTTTCCAATTGCTGTTATTCATGGGAGTGTTTCATGGAGC
TCTGCAACTCGATGCTACTGAGCTCTGCGCCATGCCTAGGCGCAACCGTA
CATTCTGCGGGGATGCTACGGACATTGCACTTGGCGACGATCGCGTCAAA
TCCTCGAAGCCCAATCAATGTCGCGTGGGTTGCCAGTCATTTTCACATCC
CGACATTACCATGACAACTCGGTCGGCCAAGTGCGCCTTCGATCTCTGCG
ATCTCGTGCAGCCGTTTCGTACGTTTGACCATGGTACGCGTATGTGTCAG
CCACGAGCAGTTTGCATTTCTGCTTGCGGCGAAGAGCCCCCAGGTTGCGT
GTACTCAGGCACGTGTCGCGAGTTCACATGCTTTCATGACAGGAACACAG
GGCGGCCGGCCAACTTCACCAGAATCACATATGCTGGACCTCGCACTATT
GTTCGCGTGAATGACTCCGTAACATCCGATAAATCTCCATATGACAACTC
ACTCGATGCGGTGCTGATATCCAGAGATAATTGCGATGGCACTTACTATC
GTATCGACAGTAAAGTCTGTGGGGAATCTGGAGACGCGTTGCTCTCGGTC
GATGAAGAGCAAGAATTCGTTCAATGTCGTAATGTTTGCCGAAATATCCA
GAACGATGCGGTAGAGATAGTGCGGATGAGGACGTCATGTGATCTGTGCA
GTTCGGAAGCTGAAAAGTCAGTTTGTATCCCTCAATCTGAATGCCAGGCT
AGTTGTGAAATGCCGTTCACGAATGTAGCAGGATGTGTTTTTACTGGTAC
TTGCAAGTCCATGATATGTGTGTCAGGAATTGATTCAAAATTACCGGCTG
TAGTAGCTGTCACTAATGATACAGGACTAGGGGGGGTCATTGTTTCCGTT
GATAACTCAAAAGCGCCCACAACATTGGATCCACCTGTATACGCGAAATA
CTTGGAGGATATTTTCGTACCAGACTCGAGGATTGAAGATAATGCGAATG
ATAACGAGCAAGTTACGACTGCAGACCATTTAGAGGGACCAACAGCTGCT
ACTGAACCGGAAAAAGTCAAAACACCTAAAAACGCAACTGCTTCCTTCGA
AGTAGACGTTGTCAAAGGACCCAGGAACAAAACTCTCGAAGAACCCAGCA
ACAAAACTGAGAACGGAGAAACGTCAAAATGGGGATGGCTTGGACCTATT
GTCGGATTACTGGGCGCCTTTATTACTGCTTTGGCGGCTCTGGCTGCAGC
CTACATTACTCGCGGGACAAAAGTACACAGGAGAAAGAAAGACTCTCCGC
ACAGAGATGTCAGCTTGTGCGATGTGGATATTGATAAATTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1706980..1708323-

>Gvermi7103.t1 ID=Gvermi7103.t1|Name=Gvermi7103.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1344bp|location=Sequence derived from alignment at ScGOVlb_24229:1706980..1708323- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCTGTTTTCCAATTGCTGTTATTCATGGGAGTGTTTCATGGAGC
TCTGCAACTCGATGCTACTGAGCTCTGCGCCATGCCTAGGCGCAACCGTA
CATTCTGCGGGGATGCTACGGACATTGCACTTGGCGACGATCGCGTCAAA
TCCTCGAAGCCCAATCAATGTCGCGTGGGTTGCCAGTCATTTTCACATCC
CGACATTACCATGACAACTCGGTCGGCCAAGTGCGCCTTCGATCTCTGCG
ATCTCGTGCAGCCGTTTCGTACGTTTGACCATGGTACGCGTATGTGTCAG
CCACGAGCAGTTTGCATTTCTGCTTGCGGCGAAGAGCCCCCAGGTTGCGT
GTACTCAGGCACGTGTCGCGAGTTCACATGCTTTCATGACAGGAACACAG
GGCGGCCGGCCAACTTCACCAGAATCACATATGCTGGACCTCGCACTATT
GTTCGCGTGAATGACTCCGTAACATCCGATAAATCTCCATATGACAACTC
ACTCGATGCGGTGCTGATATCCAGAGATAATTGCGATGGCACTTACTATC
GTATCGACAGTAAAGTCTGTGGGGAATCTGGAGACGCGTTGCTCTCGGTC
GATGAAGAGCAAGAATTCGTTCAATGTCGTAATGTTTGCCGAAATATCCA
GAACGATGCGGTAGAGATAGTGCGGATGAGGACGTCATGTGATCTGTGCA
GTTCGGAAGCTGAAAAGTCAGTTTGTATCCCTCAATCTGAATGCCAGGCT
AGTTGTGAAATGCCGTTCACGAATGTAGCAGGATGTGTTTTTACTGGTAC
TTGCAAGTCCATGATATGTGTGTCAGGAATTGATTCAAAATTACCGGCTG
TAGTAGCTGTCACTAATGATACAGGACTAGGGGGGGTCATTGTTTCCGTT
GATAACTCAAAAGCGCCCACAACATTGGATCCACCTGTATACGCGAAATA
CTTGGAGGATATTTTCGTACCAGACTCGAGGATTGAAGATAATGCGAATG
ATAACGAGCAAGTTACGACTGCAGACCATTTAGAGGGACCAACAGCTGCT
ACTGAACCGGAAAAAGTCAAAACACCTAAAAACGCAACTGCTTCCTTCGA
AGTAGACGTTGTCAAAGGACCCAGGAACAAAACTCTCGAAGAACCCAGCA
ACAAAACTGAGAACGGAGAAACGTCAAAATGGGGATGGCTTGGACCTATT
GTCGGATTACTGGGCGCCTTTATTACTGCTTTGGCGGCTCTGGCTGCAGC
CTACATTACTCGCGGGACAAAAGTACACAGGAGAAAGAAAGACTCTCCGC
ACAGAGATGTCAGCTTGTGCGATGTGGATATTGATAAATTGTGA
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