Gvermi7096.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7096.t1
Unique NameGvermi7096.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1633359..1634150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog123214.PERMA_1223
Preferred namerpsD
PFAMsRibosomal_S4,S4
Max annot lvl200783|Aquificae
KEGG koko:K02986
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112
Evalue1.85e-25
EggNOG OGsCOG0522@1|root,COG0522@2|Bacteria,2G402@200783|Aquificae
DescriptionOne of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7096Gvermi7096Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1633359..1634150 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7096.t1.stop1Gvermi7096.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1633359..1633361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7096.t1.CDS1Gvermi7096.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1633359..1634150 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7096.t1.exon1Gvermi7096.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1633359..1634150 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7096.t1.start1Gvermi7096.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1634148..1634150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7096.t1Gvermi7096.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1633359..1634150 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7096.t1 ID=Gvermi7096.t1|Name=Gvermi7096.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=264bp
MPVNYQLKNLRRLFGEASFLRPTTDSPATPLGKVARVSRRTGSDPPQKRT
KAAGGMPRAFFSEQPPRSVRNKAVSSQLYSIHLIEKQKMRLYYGAIRDSQ
FKKYVQKAAQTRHNVDAHLVRLLELRLDTFLYRTSFVKTPAQARQWIYHG
HVLVNGDVVDVKSFQMRPGDVLTIAEHHFERALQACTENAQMRKGFGCGA
SWIVSRADVAGMLPWMEIDRVGLSAVLVREPTDEEARSMTRAALFPFIRD
ANLNPLAAMRAYR*
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spliced messenger RNA

>Gvermi7096.t1 ID=Gvermi7096.t1|Name=Gvermi7096.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=792bp|location=Sequence derived from alignment at ScGOVlb_24229:1633359..1634150- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGTGAACTATCAACTGAAAAACTTGCGGCGCCTATTTGGCGAGGC
TTCGTTCCTCCGCCCTACAACCGACTCGCCCGCAACACCGCTCGGCAAAG
TAGCACGCGTATCGCGTCGGACAGGCAGCGATCCACCGCAAAAGCGGACC
AAAGCGGCAGGTGGAATGCCTCGCGCCTTTTTCTCCGAACAACCGCCGCG
CTCAGTTCGAAACAAGGCAGTTTCGTCGCAGCTATACTCCATCCATCTAA
TCGAGAAGCAAAAAATGAGGTTGTACTACGGCGCAATACGCGACTCCCAG
TTCAAAAAGTATGTGCAGAAGGCGGCCCAAACTCGGCACAACGTCGACGC
GCACCTGGTCCGTTTGCTGGAGCTGCGTCTCGATACGTTTTTGTACCGGA
CGTCGTTCGTGAAGACGCCCGCGCAGGCAAGACAATGGATTTACCACGGA
CACGTTTTGGTGAATGGCGATGTGGTCGATGTGAAGAGCTTTCAGATGAG
ACCAGGCGACGTGTTGACCATCGCGGAACACCACTTTGAGCGTGCCTTGC
AGGCCTGCACGGAGAATGCGCAGATGAGAAAAGGCTTCGGGTGCGGTGCG
TCGTGGATTGTTTCGCGCGCGGACGTGGCGGGGATGTTGCCATGGATGGA
AATCGATCGCGTGGGTCTGTCGGCAGTTTTGGTGCGGGAGCCCACTGACG
AGGAGGCGCGCTCCATGACGCGGGCGGCTCTTTTCCCGTTCATTCGGGAC
GCCAATCTCAACCCACTTGCGGCCATGCGCGCGTACAGATGA
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protein sequence of Gvermi7096.t1

>Gvermi7096.t1 ID=Gvermi7096.t1|Name=Gvermi7096.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=264bp
MPVNYQLKNLRRLFGEASFLRPTTDSPATPLGKVARVSRRTGSDPPQKRT
KAAGGMPRAFFSEQPPRSVRNKAVSSQLYSIHLIEKQKMRLYYGAIRDSQ
FKKYVQKAAQTRHNVDAHLVRLLELRLDTFLYRTSFVKTPAQARQWIYHG
HVLVNGDVVDVKSFQMRPGDVLTIAEHHFERALQACTENAQMRKGFGCGA
SWIVSRADVAGMLPWMEIDRVGLSAVLVREPTDEEARSMTRAALFPFIRD
ANLNPLAAMRAYR*
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mRNA from alignment at ScGOVlb_24229:1633359..1634150-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7096.t1 ID=Gvermi7096.t1|Name=Gvermi7096.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=792bp|location=Sequence derived from alignment at ScGOVlb_24229:1633359..1634150- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGTGAACTATCAACTGAAAAACTTGCGGCGCCTATTTGGCGAGGC
TTCGTTCCTCCGCCCTACAACCGACTCGCCCGCAACACCGCTCGGCAAAG
TAGCACGCGTATCGCGTCGGACAGGCAGCGATCCACCGCAAAAGCGGACC
AAAGCGGCAGGTGGAATGCCTCGCGCCTTTTTCTCCGAACAACCGCCGCG
CTCAGTTCGAAACAAGGCAGTTTCGTCGCAGCTATACTCCATCCATCTAA
TCGAGAAGCAAAAAATGAGGTTGTACTACGGCGCAATACGCGACTCCCAG
TTCAAAAAGTATGTGCAGAAGGCGGCCCAAACTCGGCACAACGTCGACGC
GCACCTGGTCCGTTTGCTGGAGCTGCGTCTCGATACGTTTTTGTACCGGA
CGTCGTTCGTGAAGACGCCCGCGCAGGCAAGACAATGGATTTACCACGGA
CACGTTTTGGTGAATGGCGATGTGGTCGATGTGAAGAGCTTTCAGATGAG
ACCAGGCGACGTGTTGACCATCGCGGAACACCACTTTGAGCGTGCCTTGC
AGGCCTGCACGGAGAATGCGCAGATGAGAAAAGGCTTCGGGTGCGGTGCG
TCGTGGATTGTTTCGCGCGCGGACGTGGCGGGGATGTTGCCATGGATGGA
AATCGATCGCGTGGGTCTGTCGGCAGTTTTGGTGCGGGAGCCCACTGACG
AGGAGGCGCGCTCCATGACGCGGGCGGCTCTTTTCCCGTTCATTCGGGAC
GCCAATCTCAACCCACTTGCGGCCATGCGCGCGTACAGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1633359..1634150-

>Gvermi7096.t1 ID=Gvermi7096.t1|Name=Gvermi7096.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=792bp|location=Sequence derived from alignment at ScGOVlb_24229:1633359..1634150- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGTGAACTATCAACTGAAAAACTTGCGGCGCCTATTTGGCGAGGC
TTCGTTCCTCCGCCCTACAACCGACTCGCCCGCAACACCGCTCGGCAAAG
TAGCACGCGTATCGCGTCGGACAGGCAGCGATCCACCGCAAAAGCGGACC
AAAGCGGCAGGTGGAATGCCTCGCGCCTTTTTCTCCGAACAACCGCCGCG
CTCAGTTCGAAACAAGGCAGTTTCGTCGCAGCTATACTCCATCCATCTAA
TCGAGAAGCAAAAAATGAGGTTGTACTACGGCGCAATACGCGACTCCCAG
TTCAAAAAGTATGTGCAGAAGGCGGCCCAAACTCGGCACAACGTCGACGC
GCACCTGGTCCGTTTGCTGGAGCTGCGTCTCGATACGTTTTTGTACCGGA
CGTCGTTCGTGAAGACGCCCGCGCAGGCAAGACAATGGATTTACCACGGA
CACGTTTTGGTGAATGGCGATGTGGTCGATGTGAAGAGCTTTCAGATGAG
ACCAGGCGACGTGTTGACCATCGCGGAACACCACTTTGAGCGTGCCTTGC
AGGCCTGCACGGAGAATGCGCAGATGAGAAAAGGCTTCGGGTGCGGTGCG
TCGTGGATTGTTTCGCGCGCGGACGTGGCGGGGATGTTGCCATGGATGGA
AATCGATCGCGTGGGTCTGTCGGCAGTTTTGGTGCGGGAGCCCACTGACG
AGGAGGCGCGCTCCATGACGCGGGCGGCTCTTTTCCCGTTCATTCGGGAC
GCCAATCTCAACCCACTTGCGGCCATGCGCGCGTACAGATGA
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