Gvermi6902.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6902.t1
Unique NameGvermi6902.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length364
Homology
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BLAST of Gvermi6902.t1 vs. uniprot
Match: A0A2V3IUI5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUI5_9FLOR)

HSP 1 Score: 420 bits (1080), Expect = 8.400e-144
Identity = 254/361 (70.36%), Postives = 296/361 (81.99%), Query Frame = 0 
Query:    3 LVCVLFSTVAAQESRTQEKSDVQKFVHALTADSQTVFMFELFVASLVVVYVISFVYGSFFNLKIARNVARNLREILGQQFTKFDTVDGKPLLKDGQSFYWYHATGRRYTSGLIVFMDLAKRMDIFSYTSSFMTTSQRDRLVFYLPITNDVNMDPLTLFIVKRKELPRLRDVQEGEALKSVEQFAGEVMDVNGLPDDLVTMTEHSDIIANLLPDRVRAIIARQSRNLVSIHVSENGVKWDAQCTAYKRLIRIEFTLPWQQKRIPEVLEDMSQIAIHLLDTIAETKISAAARKKAVELRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGKMSREKQIKYEEKKRKKELNARMRKSVKK 363
            ++  L ST AA E RT+       F+ AL AD QTV  FELFVASLVV+YVI F+YGS  NL +AR VA NLR IL  QF  F T +GK LLKDGQS++WYHATGRR TSGL VF+DLAKRMDIFSYTS  MT+ +RDR+VFYLPITNDV+MDPLTLFIVKRKEL RLR+V+EG AL+SVE+FAG+V+DVNG P DLVTMTEHSDI   LLP+R+R +IARQ+RNL+SIHV+ENG KWDAQC+  KRL+R+EF LP Q+  +P+VLEDM QIAIH +D +A+TK+SA ARKKA+ELR      XXXXXXXXXXXXXXXXXXXXXXXXXXAVGKMS +KQ+KYE KKRKKELNARM+KS +K
Sbjct:    4 IILALLSTTAAAE-RTES------FISALVADKQTVLFFELFVASLVVIYVICFLYGSHQNLNLARAVAHNLRNILEYQFVSFGTEEGKTLLKDGQSYFWYHATGRRNTSGLTVFLDLAKRMDIFSYTSGLMTSPERDRVVFYLPITNDVSMDPLTLFIVKRKELDRLRNVEEGLALESVERFAGQVIDVNGFPSDLVTMTEHSDISTALLPERIRNMIARQARNLISIHVTENGAKWDAQCSVSKRLVRVEFVLPRQKSNLPDVLEDMCQIAIHFVDAVADTKMSATARKKALELRRRAQLEXXXXXXXXXXXXXXXXXXXXXXXXXXAVGKMSGDKQVKYEAKKRKKELNARMKKSARK 357
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BLAST of Gvermi6902.t1 vs. uniprot
Match: R7QHT1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHT1_CHOCR)

HSP 1 Score: 299 bits (765), Expect = 7.960e-96
Identity = 177/361 (49.03%), Postives = 249/361 (68.98%), Query Frame = 0 
Query:    3 LVCVLFSTVAAQESRTQEKSDVQKFVHALTADSQTVFMFELFVASLVVVYVISFVYGSFFNLKIARNVARNLREILGQQFTKFDTVDGKPLLKDGQSFYWYHATGRRYTSGLIVFMDLAKRMDIFSYTSSFMTTSQRDRLVFYLPITNDVNMDPLTLFIVKRKELPRLRDVQEGEALKSVEQFAGEVMDVNGLPDDLVTMTEHSDIIANLLPDRVRAIIARQSRNLVSIHVSENGVKWDAQCTAYKRLIRIEFTLPWQQKRIPEVLEDMSQIAIHLLDTIAETKISAAARKKAVELRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGKMSREKQIKYEEKKRKKELNARMRKSVKK 363
            ++CV     AA      ++S+       L AD  T+ +FE+ +A+LVV + I+F+YGS  N  +AR VA+ + ++L  +F        + LLKDG+S+YWY+ATGRRYTSGL VFMDLAKRMD+F+YTS   +T Q+DR+VFYLP+T+D +M+P++L +V++KEL RLR+++EG  L+  E  A  V+++NG+P D V MTEHSD+   LLP+R+R +I    + + SIHV+ENG  WD+QCT  KRLIR++F+LP +   +P VL+ M QI++HL+D   E +++  ++KKA+ELR             XXXXXXXXXXXXXXXXXXX         Q+KYEEKKRKKE+NARMRK+ +K
Sbjct:   24 ILCVQVQAQAAGGKPASKRSE-----SPLIADENTMQLFEMAMAALVVAFAITFMYGSITNRSLARKVAKLMEDLLTLEFAHSGVSSTEKLLKDGESYYWYYATGRRYTSGLTVFMDLAKRMDVFAYTSGLFSTPQKDRIVFYLPLTDDFDMEPMSLLLVRKKELFRLRELKEGAPLREAETVAANVLELNGIPVDFVCMTEHSDVATALLPERIRTLIQENGKYINSIHVAENGASWDSQCTLTKRLIRVDFSLPGKSSLLPAVLQAMLQISMHLVDAAGEVRLTPVSKKKAIELRKKAVQEAERHIQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXQMKYEEKKRKKEINARMRKATRK 379
The following BLAST results are available for this feature:
BLAST of Gvermi6902.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IUI5_9FLOR8.400e-14470.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QHT1_CHOCR7.960e-9649.03Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 288..330
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 344..363
NoneNo IPR availablePANTHERPTHR12883:SF0COILED-COIL DOMAIN-CONTAINING PROTEIN 47coord: 31..360
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 14..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..13
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 59..363
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..58
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..13
NoneNo IPR availableTMHMMTMhelixcoord: 40..62
IPR012879PAT complex subunit CCDC47PFAMPF07946DUF1682coord: 39..353
e-value: 1.4E-53
score: 182.2
IPR012879PAT complex subunit CCDC47PANTHERPTHR12883ADIPOCYTE-SPECIFIC PROTEIN 4-RELATEDcoord: 31..360

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:399874..400965 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6902.t1Gvermi6902.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 399874..400965 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6902.t1 ID=Gvermi6902.t1|Name=Gvermi6902.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=364bp
LFLVCVLFSTVAAQESRTQEKSDVQKFVHALTADSQTVFMFELFVASLVV
VYVISFVYGSFFNLKIARNVARNLREILGQQFTKFDTVDGKPLLKDGQSF
YWYHATGRRYTSGLIVFMDLAKRMDIFSYTSSFMTTSQRDRLVFYLPITN
DVNMDPLTLFIVKRKELPRLRDVQEGEALKSVEQFAGEVMDVNGLPDDLV
TMTEHSDIIANLLPDRVRAIIARQSRNLVSIHVSENGVKWDAQCTAYKRL
IRIEFTLPWQQKRIPEVLEDMSQIAIHLLDTIAETKISAAARKKAVELRR
KVIQEEEKKLQKARADEAAARRLAKKKEEEEAVGKMSREKQIKYEEKKRK
KELNARMRKSVKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012879CCDC47