Gvermi6902.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6902.t1
Unique Name	Gvermi6902.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	364

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:399874..400965 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3656.XP_008452256.1
PFAMs	DUF1682
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0012505,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046872
Evalue	1.08e-12
EggNOG OGs	KOG2357@1\|root,KOG2357@2759\|Eukaryota,37HXB@33090\|Viridiplantae,3GCK9@35493\|Streptophyta,4JMC9@91835\|fabids
Description	At5g49945-like
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6902	Gvermi6902	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 399874..400965 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6902.t1.start1	Gvermi6902.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 399874..399876 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6902.t1.CDS1	Gvermi6902.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 399874..400965 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6902.t1.exon1	Gvermi6902.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 399874..400965 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6902.t1.stop1	Gvermi6902.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 400963..400965 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6902.t1	Gvermi6902.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 399874..400965 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:399874..400965+
coding sequence from alignment at ScGOVlb_24229:399874..400965+

mRNA sequence

>Gvermi6902.t1 ID=Gvermi6902.t1|Name=Gvermi6902.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=364bp
LFLVCVLFSTVAAQESRTQEKSDVQKFVHALTADSQTVFMFELFVASLVV
VYVISFVYGSFFNLKIARNVARNLREILGQQFTKFDTVDGKPLLKDGQSF
YWYHATGRRYTSGLIVFMDLAKRMDIFSYTSSFMTTSQRDRLVFYLPITN
DVNMDPLTLFIVKRKELPRLRDVQEGEALKSVEQFAGEVMDVNGLPDDLV
TMTEHSDIIANLLPDRVRAIIARQSRNLVSIHVSENGVKWDAQCTAYKRL
IRIEFTLPWQQKRIPEVLEDMSQIAIHLLDTIAETKISAAARKKAVELRR
KVIQEEEKKLQKARADEAAARRLAKKKEEEEAVGKMSREKQIKYEEKKRK
KELNARMRKSVKK*

spliced messenger RNA

>Gvermi6902.t1 ID=Gvermi6902.t1|Name=Gvermi6902.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at ScGOVlb_24229:399874..400965+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTTCTTAGTTTGTGTTCTCTTTTCGACCGTCGCTGCTCAAGAATCTAG
AACGCAGGAAAAATCTGATGTGCAGAAATTCGTACATGCCTTGACCGCAG
ATTCTCAGACCGTGTTCATGTTCGAGCTGTTTGTCGCTTCTCTTGTCGTT
GTGTACGTTATTAGCTTCGTATACGGATCTTTCTTTAATTTGAAGATTGC
GCGAAATGTGGCACGAAACTTGCGTGAGATTCTGGGTCAGCAGTTTACGA
AGTTTGATACCGTGGACGGCAAACCGCTGCTCAAAGATGGGCAATCGTTT
TACTGGTATCATGCCACTGGTCGACGGTATACTTCTGGACTTATTGTGTT
CATGGATCTTGCAAAGCGCATGGATATATTCTCTTACACTTCAAGCTTCA
TGACGACTTCTCAACGAGACCGTCTTGTGTTTTACTTGCCCATTACGAAC
GATGTTAATATGGATCCACTCACATTGTTCATTGTGAAGCGAAAAGAGCT
ACCACGATTGAGAGATGTTCAAGAGGGTGAAGCTCTCAAGTCAGTAGAGC
AATTTGCTGGAGAGGTCATGGACGTGAACGGACTCCCAGATGATCTCGTC
ACCATGACAGAACACAGTGATATTATAGCAAATCTTCTTCCCGATAGAGT
CCGTGCGATCATTGCTCGTCAGTCAAGGAACCTTGTGTCAATTCATGTAT
CAGAGAACGGCGTGAAATGGGATGCGCAGTGCACAGCATATAAGCGACTC
ATTCGAATTGAATTTACGCTGCCATGGCAGCAAAAACGTATTCCAGAAGT
TCTTGAAGATATGTCTCAGATTGCAATCCATTTGTTGGACACAATTGCAG
AGACCAAAATTTCGGCAGCAGCTCGTAAAAAGGCAGTAGAGTTGCGTAGA
AAAGTAATTCAGGAAGAAGAAAAGAAGCTTCAAAAGGCTCGGGCAGATGA
GGCGGCTGCTCGCAGGCTGGCCaagaaaaaggaagaagaagaagcagTTG
GAAAAATGTCCCGCGAAAAGCAGATCAAATATGAGGAGAAGAAGCGAAAA
AAGGAACTTAATGCTCGCATGAGAAAGAGTGTGAAAAAATAA

protein sequence of Gvermi6902.t1

>Gvermi6902.t1 ID=Gvermi6902.t1|Name=Gvermi6902.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=364bp
LFLVCVLFSTVAAQESRTQEKSDVQKFVHALTADSQTVFMFELFVASLVV
VYVISFVYGSFFNLKIARNVARNLREILGQQFTKFDTVDGKPLLKDGQSF
YWYHATGRRYTSGLIVFMDLAKRMDIFSYTSSFMTTSQRDRLVFYLPITN
DVNMDPLTLFIVKRKELPRLRDVQEGEALKSVEQFAGEVMDVNGLPDDLV
TMTEHSDIIANLLPDRVRAIIARQSRNLVSIHVSENGVKWDAQCTAYKRL
IRIEFTLPWQQKRIPEVLEDMSQIAIHLLDTIAETKISAAARKKAVELRR
KVIQEEEKKLQKARADEAAARRLAKKKEEEEAVGKMSREKQIKYEEKKRK
KELNARMRKSVKK*

mRNA from alignment at ScGOVlb_24229:399874..400965+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6902.t1 ID=Gvermi6902.t1|Name=Gvermi6902.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at ScGOVlb_24229:399874..400965+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGTTCTTAGTTTGTGTTCTCTTTTCGACCGTCGCTGCTCAAGAATCTAG
AACGCAGGAAAAATCTGATGTGCAGAAATTCGTACATGCCTTGACCGCAG
ATTCTCAGACCGTGTTCATGTTCGAGCTGTTTGTCGCTTCTCTTGTCGTT
GTGTACGTTATTAGCTTCGTATACGGATCTTTCTTTAATTTGAAGATTGC
GCGAAATGTGGCACGAAACTTGCGTGAGATTCTGGGTCAGCAGTTTACGA
AGTTTGATACCGTGGACGGCAAACCGCTGCTCAAAGATGGGCAATCGTTT
TACTGGTATCATGCCACTGGTCGACGGTATACTTCTGGACTTATTGTGTT
CATGGATCTTGCAAAGCGCATGGATATATTCTCTTACACTTCAAGCTTCA
TGACGACTTCTCAACGAGACCGTCTTGTGTTTTACTTGCCCATTACGAAC
GATGTTAATATGGATCCACTCACATTGTTCATTGTGAAGCGAAAAGAGCT
ACCACGATTGAGAGATGTTCAAGAGGGTGAAGCTCTCAAGTCAGTAGAGC
AATTTGCTGGAGAGGTCATGGACGTGAACGGACTCCCAGATGATCTCGTC
ACCATGACAGAACACAGTGATATTATAGCAAATCTTCTTCCCGATAGAGT
CCGTGCGATCATTGCTCGTCAGTCAAGGAACCTTGTGTCAATTCATGTAT
CAGAGAACGGCGTGAAATGGGATGCGCAGTGCACAGCATATAAGCGACTC
ATTCGAATTGAATTTACGCTGCCATGGCAGCAAAAACGTATTCCAGAAGT
TCTTGAAGATATGTCTCAGATTGCAATCCATTTGTTGGACACAATTGCAG
AGACCAAAATTTCGGCAGCAGCTCGTAAAAAGGCAGTAGAGTTGCGTAGA
AAAGTAATTCAGGAAGAAGAAAAGAAGCTTCAAAAGGCTCGGGCAGATGA
GGCGGCTGCTCGCAGGCTGGCCaagaaaaaggaagaagaagaagcagTTG
GAAAAATGTCCCGCGAAAAGCAGATCAAATATGAGGAGAAGAAGCGAAAA
AAGGAACTTAATGCTCGCATGAGAAAGAGTGTGAAAAAATAA

Coding sequence (CDS) from alignment at ScGOVlb_24229:399874..400965+

>Gvermi6902.t1 ID=Gvermi6902.t1|Name=Gvermi6902.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1092bp|location=Sequence derived from alignment at ScGOVlb_24229:399874..400965+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGTTCTTAGTTTGTGTTCTCTTTTCGACCGTCGCTGCTCAAGAATCTAG
AACGCAGGAAAAATCTGATGTGCAGAAATTCGTACATGCCTTGACCGCAG
ATTCTCAGACCGTGTTCATGTTCGAGCTGTTTGTCGCTTCTCTTGTCGTT
GTGTACGTTATTAGCTTCGTATACGGATCTTTCTTTAATTTGAAGATTGC
GCGAAATGTGGCACGAAACTTGCGTGAGATTCTGGGTCAGCAGTTTACGA
AGTTTGATACCGTGGACGGCAAACCGCTGCTCAAAGATGGGCAATCGTTT
TACTGGTATCATGCCACTGGTCGACGGTATACTTCTGGACTTATTGTGTT
CATGGATCTTGCAAAGCGCATGGATATATTCTCTTACACTTCAAGCTTCA
TGACGACTTCTCAACGAGACCGTCTTGTGTTTTACTTGCCCATTACGAAC
GATGTTAATATGGATCCACTCACATTGTTCATTGTGAAGCGAAAAGAGCT
ACCACGATTGAGAGATGTTCAAGAGGGTGAAGCTCTCAAGTCAGTAGAGC
AATTTGCTGGAGAGGTCATGGACGTGAACGGACTCCCAGATGATCTCGTC
ACCATGACAGAACACAGTGATATTATAGCAAATCTTCTTCCCGATAGAGT
CCGTGCGATCATTGCTCGTCAGTCAAGGAACCTTGTGTCAATTCATGTAT
CAGAGAACGGCGTGAAATGGGATGCGCAGTGCACAGCATATAAGCGACTC
ATTCGAATTGAATTTACGCTGCCATGGCAGCAAAAACGTATTCCAGAAGT
TCTTGAAGATATGTCTCAGATTGCAATCCATTTGTTGGACACAATTGCAG
AGACCAAAATTTCGGCAGCAGCTCGTAAAAAGGCAGTAGAGTTGCGTAGA
AAAGTAATTCAGGAAGAAGAAAAGAAGCTTCAAAAGGCTCGGGCAGATGA
GGCGGCTGCTCGCAGGCTGGCCaagaaaaaggaagaagaagaagcagTTG
GAAAAATGTCCCGCGAAAAGCAGATCAAATATGAGGAGAAGAAGCGAAAA
AAGGAACTTAATGCTCGCATGAGAAAGAGTGTGAAAAAATAA