Gvermi6920.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6920.t1
Unique NameGvermi6920.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length356
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:483340..484407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703559.1
PFAMsILVD_EDD
Max annot lvl2759|Eukaryota
KEGG rclassRC00468,RC01714
KEGG koko:K01687
KEGG ReactionR01209,R04441,R05070
KEGG Pathwayko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00570
Evalue1.48e-93
EggNOG OGsCOG0129@1|root,KOG2448@2759|Eukaryota
EC4.2.1.9
Descriptiondihydroxy-acid dehydratase activity
COG categoryEG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6920Gvermi6920Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 483340..484407 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6920.t1.stop1Gvermi6920.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 483340..483342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6920.t1.CDS1Gvermi6920.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 483340..484407 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6920.t1.exon1Gvermi6920.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 483340..484407 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6920.t1.start1Gvermi6920.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 484405..484407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6920.t1Gvermi6920.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 483340..484407 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6920.t1 ID=Gvermi6920.t1|Name=Gvermi6920.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=356bp
MTHANATPCMAHVNASRNSVARRRNTCRKAFLFGTLVISDGNNMETTGMR
YWLISRDLVPKCIEIMNGHHLADGMGTLSRCDKSIAAASMPILRNDSVGV
MLYGGTILPGHLEVVDTTVSFTRKAIGAPSAGKIDDAELGQKERNYCLVI
GSRGRMFTAYLISSRGEDVGMRVPYSTGPTAVDSQKNISKDNVQTCVRSF
EALFTCIECSITSTQICTRKAFQNGVTVWVALGGSIHAVLDCLALAHEAE
VELTIDDSNAFGERVPLLGDFKPFGSYSMPELEMIGHISLVLKYILDNEL
LDGECIAFARKTVEKHLAKVPSMPSALDVQKALADSYDRPASKLVLMSSS
DSTIP*
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spliced messenger RNA

>Gvermi6920.t1 ID=Gvermi6920.t1|Name=Gvermi6920.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at ScGOVlb_24229:483340..484407- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCATGCCAATGCCACTCCGTGTATGGCTCACGTAAATGCTTCTCG
AAATTCTGTAGCACGACGTCGGAACACTTGCAGAAAGGCATTCTTGTTCG
GCACTCTTGTAATATCTGATGGAAATAACATGGAAACGACCGGCATGCGC
TATTGGCTCATTTCACGAGACCTTGTGCCCAAGTGTATTGAAATTATGAA
TGGACACCACCTGGCAGACGGTATGGGGACCCTTAGTAGATGTGACAAGA
GCATTGCCGCTGCATCGATGCCAATTCTAAGGAACGACTCTGTTGGAGTC
ATGCTGTACGGGGGAACCATCCTTCCAGGTCATCTGGAAGTGGTAGATAC
TACCGTGAGTTTTACACGCAAAGCTATTGGCGCGCCTTCAGCGGGGAAGA
TCGATGACGCTGAGTTGGGGCAAAAGGAACGTAACTATTGTCTGGTAATT
GGTAGTCGCGGTCGGATGTTCACTGCATATCTAATATCAAGCAGAGGCGA
AGATGTGGGAATGCGTGTTCCCTATTCCACTGGACCCACAGCTGTAGACA
GTCAGAAAAACATCAGCAAAGACAATGTACAAACCTGCGTGCGTAGTTTC
GAGGCCTTGTTCACGTGTATAGAATGCAGCATTACGAGCACGCAGATCTG
CACCAGAAAAGCATTTCAAAACGGTGTTACCGTGTGGGTGGCACTCGGCG
GAAGCATACATGCTGTGCTAGACTGTTTAGCACTTGCACATGAGGCAGAG
GTCGAGCTCACGATTGACGATTCTAACGCTTTCGGAGAACGAGTTCCTTT
GCTTGGAGACTTCAAACCTTTCGGATCGTACTCAATGCCAGAACTTGAGA
TGATCGGTCACATTTCGTTGGTCCTGAAATATATACTTGACAACGAGCTC
CTGGACGGTGAATGTATTGCGTTTGCGAGAAAGACAGTGGAGAAACATTT
GGCAAAGGTTCCCAGTATGCCCAGTGCTCTGGATGTGCAGAAAGCATTAG
CTGACTCATATGATCGTCCCGCTTCTAAACTAGTTCTCATGTCATCATCA
GATTCCACAATTCCATAG
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protein sequence of Gvermi6920.t1

>Gvermi6920.t1 ID=Gvermi6920.t1|Name=Gvermi6920.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=356bp
MTHANATPCMAHVNASRNSVARRRNTCRKAFLFGTLVISDGNNMETTGMR
YWLISRDLVPKCIEIMNGHHLADGMGTLSRCDKSIAAASMPILRNDSVGV
MLYGGTILPGHLEVVDTTVSFTRKAIGAPSAGKIDDAELGQKERNYCLVI
GSRGRMFTAYLISSRGEDVGMRVPYSTGPTAVDSQKNISKDNVQTCVRSF
EALFTCIECSITSTQICTRKAFQNGVTVWVALGGSIHAVLDCLALAHEAE
VELTIDDSNAFGERVPLLGDFKPFGSYSMPELEMIGHISLVLKYILDNEL
LDGECIAFARKTVEKHLAKVPSMPSALDVQKALADSYDRPASKLVLMSSS
DSTIP*
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mRNA from alignment at ScGOVlb_24229:483340..484407-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6920.t1 ID=Gvermi6920.t1|Name=Gvermi6920.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at ScGOVlb_24229:483340..484407- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCATGCCAATGCCACTCCGTGTATGGCTCACGTAAATGCTTCTCG
AAATTCTGTAGCACGACGTCGGAACACTTGCAGAAAGGCATTCTTGTTCG
GCACTCTTGTAATATCTGATGGAAATAACATGGAAACGACCGGCATGCGC
TATTGGCTCATTTCACGAGACCTTGTGCCCAAGTGTATTGAAATTATGAA
TGGACACCACCTGGCAGACGGTATGGGGACCCTTAGTAGATGTGACAAGA
GCATTGCCGCTGCATCGATGCCAATTCTAAGGAACGACTCTGTTGGAGTC
ATGCTGTACGGGGGAACCATCCTTCCAGGTCATCTGGAAGTGGTAGATAC
TACCGTGAGTTTTACACGCAAAGCTATTGGCGCGCCTTCAGCGGGGAAGA
TCGATGACGCTGAGTTGGGGCAAAAGGAACGTAACTATTGTCTGGTAATT
GGTAGTCGCGGTCGGATGTTCACTGCATATCTAATATCAAGCAGAGGCGA
AGATGTGGGAATGCGTGTTCCCTATTCCACTGGACCCACAGCTGTAGACA
GTCAGAAAAACATCAGCAAAGACAATGTACAAACCTGCGTGCGTAGTTTC
GAGGCCTTGTTCACGTGTATAGAATGCAGCATTACGAGCACGCAGATCTG
CACCAGAAAAGCATTTCAAAACGGTGTTACCGTGTGGGTGGCACTCGGCG
GAAGCATACATGCTGTGCTAGACTGTTTAGCACTTGCACATGAGGCAGAG
GTCGAGCTCACGATTGACGATTCTAACGCTTTCGGAGAACGAGTTCCTTT
GCTTGGAGACTTCAAACCTTTCGGATCGTACTCAATGCCAGAACTTGAGA
TGATCGGTCACATTTCGTTGGTCCTGAAATATATACTTGACAACGAGCTC
CTGGACGGTGAATGTATTGCGTTTGCGAGAAAGACAGTGGAGAAACATTT
GGCAAAGGTTCCCAGTATGCCCAGTGCTCTGGATGTGCAGAAAGCATTAG
CTGACTCATATGATCGTCCCGCTTCTAAACTAGTTCTCATGTCATCATCA
GATTCCACAATTCCATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:483340..484407-

>Gvermi6920.t1 ID=Gvermi6920.t1|Name=Gvermi6920.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1068bp|location=Sequence derived from alignment at ScGOVlb_24229:483340..484407- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCATGCCAATGCCACTCCGTGTATGGCTCACGTAAATGCTTCTCG
AAATTCTGTAGCACGACGTCGGAACACTTGCAGAAAGGCATTCTTGTTCG
GCACTCTTGTAATATCTGATGGAAATAACATGGAAACGACCGGCATGCGC
TATTGGCTCATTTCACGAGACCTTGTGCCCAAGTGTATTGAAATTATGAA
TGGACACCACCTGGCAGACGGTATGGGGACCCTTAGTAGATGTGACAAGA
GCATTGCCGCTGCATCGATGCCAATTCTAAGGAACGACTCTGTTGGAGTC
ATGCTGTACGGGGGAACCATCCTTCCAGGTCATCTGGAAGTGGTAGATAC
TACCGTGAGTTTTACACGCAAAGCTATTGGCGCGCCTTCAGCGGGGAAGA
TCGATGACGCTGAGTTGGGGCAAAAGGAACGTAACTATTGTCTGGTAATT
GGTAGTCGCGGTCGGATGTTCACTGCATATCTAATATCAAGCAGAGGCGA
AGATGTGGGAATGCGTGTTCCCTATTCCACTGGACCCACAGCTGTAGACA
GTCAGAAAAACATCAGCAAAGACAATGTACAAACCTGCGTGCGTAGTTTC
GAGGCCTTGTTCACGTGTATAGAATGCAGCATTACGAGCACGCAGATCTG
CACCAGAAAAGCATTTCAAAACGGTGTTACCGTGTGGGTGGCACTCGGCG
GAAGCATACATGCTGTGCTAGACTGTTTAGCACTTGCACATGAGGCAGAG
GTCGAGCTCACGATTGACGATTCTAACGCTTTCGGAGAACGAGTTCCTTT
GCTTGGAGACTTCAAACCTTTCGGATCGTACTCAATGCCAGAACTTGAGA
TGATCGGTCACATTTCGTTGGTCCTGAAATATATACTTGACAACGAGCTC
CTGGACGGTGAATGTATTGCGTTTGCGAGAAAGACAGTGGAGAAACATTT
GGCAAAGGTTCCCAGTATGCCCAGTGCTCTGGATGTGCAGAAAGCATTAG
CTGACTCATATGATCGTCCCGCTTCTAAACTAGTTCTCATGTCATCATCA
GATTCCACAATTCCATAG
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