Gvermi7101.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7101.t1
Unique NameGvermi7101.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length156
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1664238..1664850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_021678-tr
PFAMsRVT_1,rve
Max annot lvl33208|Metazoa
Evalue6.89e-29
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3AH2J@33154|Opisthokonta,3BX3Q@33208|Metazoa
Descriptiontransposition, RNA-mediated
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7101Gvermi7101Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1664238..1664850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7101.t1Gvermi7101.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1664238..1664850 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7101.t1.stop1Gvermi7101.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1664238..1664240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7101.t1.CDS1Gvermi7101.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1664238..1664558 -
Gvermi7101.t1.CDS2Gvermi7101.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1664704..1664850 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7101.t1.exon1Gvermi7101.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1664238..1664558 -
Gvermi7101.t1.exon2Gvermi7101.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1664704..1664850 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7101.t1.intron1Gvermi7101.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 1664559..1664703 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7101.t1.start1Gvermi7101.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1664848..1664850 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7101.t1 ID=Gvermi7101.t1|Name=Gvermi7101.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=156bp
MLRAEVLEPAQSPWASPAVLAIKADGTWKFLVDYRRLNAVTVRDTYPIPR
IPFDLTNAPATFQRAIDIILSRFKWRKCLVYLDDIIVFSDNLNDHLTHVR
DDMTVLRDVGITLKLKKCEFFTDTVNYLWRIIRPGRLMIEETRVKSFALA
MEPTT*
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spliced messenger RNA

>Gvermi7101.t1 ID=Gvermi7101.t1|Name=Gvermi7101.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=468bp|location=Sequence derived from alignment at ScGOVlb_24229:1664238..1664850- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCGCGCTGAAGTGCTTGAGCCCGCTCAGTCGCCTTGGGCGTCCCC
AGCGGTGCTGGCGATTAAAGCCGATGGGACTTGGAAATTTCTTGTTGATT
ACCGCCGGTTAAACGCCGTAACGGTACGGGATACATATCCTATCCCCCGG
ATACCGTTTGATCTCACAAACGCCCCCGCTACCTTTCAGCGGGCGATCGA
CATCATTTTGAGTCGATTCAAATGGCGGAAATGCCTGGTCTATCTGGATG
ACATCATCGTCTTTTCAGATAACCTGAACGACCACCTCACCCATGTAAGG
GATGATATGACCGTATTACGGGACGTAGGAATAACCCTAAAGTTGAAAAA
GTGTGAGTTCTTCACTGACACCGTGAACTATCTCTGGCGTATTATCCGTC
CGGGACGGTTGATGATTGAAGAAACCCGTGTGAAGTCATTCGCCCTTGCT
ATGGAACCGACAACATAG
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protein sequence of Gvermi7101.t1

>Gvermi7101.t1 ID=Gvermi7101.t1|Name=Gvermi7101.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=156bp
MLRAEVLEPAQSPWASPAVLAIKADGTWKFLVDYRRLNAVTVRDTYPIPR
IPFDLTNAPATFQRAIDIILSRFKWRKCLVYLDDIIVFSDNLNDHLTHVR
DDMTVLRDVGITLKLKKCEFFTDTVNYLWRIIRPGRLMIEETRVKSFALA
MEPTT*
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mRNA from alignment at ScGOVlb_24229:1664238..1664850-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7101.t1 ID=Gvermi7101.t1|Name=Gvermi7101.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=613bp|location=Sequence derived from alignment at ScGOVlb_24229:1664238..1664850- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCCGCGCTGAAGTGCTTGAGCCCGCTCAGTCGCCTTGGGCGTCCCC
AGCGGTGCTGGCGATTAAAGCCGATGGGACTTGGAAATTTCTTGTTGATT
ACCGCCGGTTAAACGCCGTAACGGTACGGGATACATATCCTATCCCCGTA
TGGACGAGTGTATCGATTCTCTAGGCAACGCTATCGTGTTCACCACCCTC
GATGCTAATTGGGGGTATTGGCAAGTCTCTATAAGGGGTGAGCACCGCGA
CAAGACAGCTTTTTTTGTCACTCTGGATCCTACCGCTTTAAGCGGATACC
GTTTGATCTCACAAACGCCCCCGCTACCTTTCAGCGGGCGATCGACATCA
TTTTGAGTCGATTCAAATGGCGGAAATGCCTGGTCTATCTGGATGACATC
ATCGTCTTTTCAGATAACCTGAACGACCACCTCACCCATGTAAGGGATGA
TATGACCGTATTACGGGACGTAGGAATAACCCTAAAGTTGAAAAAGTGTG
AGTTCTTCACTGACACCGTGAACTATCTCTGGCGTATTATCCGTCCGGGA
CGGTTGATGATTGAAGAAACCCGTGTGAAGTCATTCGCCCTTGCTATGGA
ACCGACAACATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1664238..1664850-

>Gvermi7101.t1 ID=Gvermi7101.t1|Name=Gvermi7101.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=468bp|location=Sequence derived from alignment at ScGOVlb_24229:1664238..1664850- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCCGCGCTGAAGTGCTTGAGCCCGCTCAGTCGCCTTGGGCGTCCCC
AGCGGTGCTGGCGATTAAAGCCGATGGGACTTGGAAATTTCTTGTTGATT
ACCGCCGGTTAAACGCCGTAACGGTACGGGATACATATCCTATCCCCCGG
ATACCGTTTGATCTCACAAACGCCCCCGCTACCTTTCAGCGGGCGATCGA
CATCATTTTGAGTCGATTCAAATGGCGGAAATGCCTGGTCTATCTGGATG
ACATCATCGTCTTTTCAGATAACCTGAACGACCACCTCACCCATGTAAGG
GATGATATGACCGTATTACGGGACGTAGGAATAACCCTAAAGTTGAAAAA
GTGTGAGTTCTTCACTGACACCGTGAACTATCTCTGGCGTATTATCCGTC
CGGGACGGTTGATGATTGAAGAAACCCGTGTGAAGTCATTCGCCCTTGCT
ATGGAACCGACAACATAG
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