Gvermi7099.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7099.t1
Unique NameGvermi7099.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length479
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1638644..1640080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8364.ENSXETP00000053817
Preferred nameRUVBL2
PFAMsTIP49
Max annot lvl33208|Metazoa
KEGG koko:K11338
GOsGO:0000123,GO:0000166,GO:0000226,GO:0000228,GO:0000491,GO:0000492,GO:0000785,GO:0000790,GO:0000791,GO:0000812,GO:0000976,GO:0000977,GO:0000979,GO:0000980,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0001158,GO:0001578,GO:0002009,GO:0002165,GO:0003341,GO:0003351,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003690,GO:0003712,GO:0003714,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005719,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006325,GO:0006338,GO:0006342,GO:0006355,GO:0006356,GO:0006357,GO:0006457,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007431,GO:0007435,GO:0007444,GO:0007478,GO:0007480,GO:0007507,GO:0007552,GO:0007560,GO:0008013,GO:0008026,GO:0008094,GO:0008104,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010623,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0012501,GO:0012502,GO:0014070,GO:0015630,GO:0016020,GO:0016043,GO:0016363,GO:0016458,GO:0016462,GO:0016569,GO:0016570,GO:0016573,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017076,GO:0017111,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022607,GO:0022612,GO:0022613,GO:0022618,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030111,GO:0030154,GO:0030178,GO:0030554,GO:0031011,GO:0031056,GO:0031058,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031490,GO:0031974,GO:0031981,GO:0032091,GO:0032268,GO:0032270,GO:0032355,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032870,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033202,GO:0033365,GO:0033554,GO:0033993,GO:0034399,GO:0034502,GO:0034613,GO:0034622,GO:0034641,GO:0034644,GO:0034708,GO:0034728,GO:0035065,GO:0035066,GO:0035070,GO:0035071,GO:0035072,GO:0035075,GO:0035078,GO:0035081,GO:0035082,GO:0035097,GO:0035107,GO:0035114,GO:0035120,GO:0035218,GO:0035239,GO:0035267,GO:0035272,GO:0035295,GO:0035326,GO:0035639,GO:0036094,GO:0036211,GO:0036314,GO:0040008,GO:0040029,GO:0042127,GO:0042221,GO:0042623,GO:0042802,GO:0042803,GO:0043044,GO:0043067,GO:0043068,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043486,GO:0043531,GO:0043543,GO:0043565,GO:0043933,GO:0043967,GO:0043968,GO:0044085,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044458,GO:0044464,GO:0044665,GO:0044782,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045943,GO:0045944,GO:0046483,GO:0046620,GO:0046983,GO:0048102,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048565,GO:0048569,GO:0048583,GO:0048585,GO:0048638,GO:0048707,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051082,GO:0051098,GO:0051100,GO:0051117,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0051716,GO:0055123,GO:0060033,GO:0060255,GO:0060271,GO:0060420,GO:0060429,GO:0060562,GO:0060828,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070035,GO:0070199,GO:0070286,GO:0070603,GO:0070727,GO:0070887,GO:0070925,GO:0071103,GO:0071168,GO:0071169,GO:0071214,GO:0071310,GO:0071339,GO:0071392,GO:0071396,GO:0071407,GO:0071478,GO:0071482,GO:0071495,GO:0071704,GO:0071733,GO:0071824,GO:0071826,GO:0071840,GO:0071898,GO:0071899,GO:0072359,GO:0072594,GO:0080090,GO:0090090,GO:0090202,GO:0090304,GO:0090579,GO:0097159,GO:0097255,GO:0097305,GO:0097346,GO:0097367,GO:0104004,GO:0120031,GO:0120036,GO:0140097,GO:0140110,GO:1900120,GO:1900121,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901654,GO:1901700,GO:1901701,GO:1901836,GO:1901838,GO:1901983,GO:1901985,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904949,GO:1905269,GO:1990234,GO:1990837,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000756,GO:2000758,GO:2001141,GO:2001252
Evalue3.14e-227
EggNOG OGsCOG1224@1|root,KOG2680@2759|Eukaryota,38DYY@33154|Opisthokonta,3BCRH@33208|Metazoa,3CVB4@33213|Bilateria,48618@7711|Chordata,48W5C@7742|Vertebrata
EC3.6.4.12
DescriptionATP-dependent 5'-3' DNA helicase activity
COG categoryL
BRITEko00000,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7099Gvermi7099Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1638644..1640080 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7099.t1.start1Gvermi7099.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1638644..1638646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7099.t1.CDS1Gvermi7099.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1638644..1640080 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7099.t1.exon1Gvermi7099.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1638644..1640080 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7099.t1.stop1Gvermi7099.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1640078..1640080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7099.t1Gvermi7099.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1638644..1640080 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7099.t1 ID=Gvermi7099.t1|Name=Gvermi7099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=479bp
MLNSRFEETVKRPGMERIGAHSHIRGLGLDEQLNPAHIGQGLVGQMEARK
AAGLIVRMIQSGKLAGRAILIAGQPGTGKTALAMAMAQALGRDTPFTKIT
ASEVFSLGMSKTEALTQALRRSIGVKIHEETDIIEGEVVELQIDRPLSSQ
STEITHSGKLTLKTTEMETVYDLGVKMIKSLQKEKVTSGDVITIDKATGK
ITKLGRSFARSRDFDATGSNIRFVQTPDGELQRRKEVVHVVSIHEIDVIN
SRQQGFLALFSGDTGEIKSEVREQIDIKVAEWREEGKAELVPGVLFIDEV
HMLDIECFSFINKAIESDLAPVLIMASNRGITYIRGTKYKAPHGLPLDLL
DRLLIISTKPYEEKEVDEILRLRCEEEDIALSDNARALLTRIGMETSLRY
AMYLITSSALVCAKRNGTEVDVEDIKRTYALFSDVKRSTQTLAEYQGEFM
FSSNQEAVAQAKTQSGEDPMQSIVPARS*
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spliced messenger RNA

>Gvermi7099.t1 ID=Gvermi7099.t1|Name=Gvermi7099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1437bp|location=Sequence derived from alignment at ScGOVlb_24229:1638644..1640080+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAACTCGCGTTTTGAGGAGACGGTGAAACGACCCGGAATGGAGAG
AATCGGGGCGCACTCGCATATTCGGGGCCTTGGACTGGATGAACAACTGA
ACCCGGCGCATATCGGTCAAGGGCTGGTCGGTCAAATGGAGGCAAGAAAA
GCCGCAGGGCTAATCGTGCGCATGATACAGTCGGGAAAGTTGGCCGGACG
CGCTATTCTCATCGCCGGGCAGCCTGGCACTGGGAAAACGGCCCTTGCGA
TGGCAATGGCCCAGGCCTTGGGGCGTGACACTCCTTTCACTAAAATCACC
GCCAGTGAAGTCTTTTCATTGGGAATGTCAAAGACAGAGGCGCTTACGCA
GGCCTTAAGACGTAGCATCGGGGTCAAGATTCACGAAGAGACTGATATTA
TAGAAGGAGAGGTCGTAGAGCTGCAGATCGATCGTCCTCTTTCGTCACAG
TCTACAGAGATTACTCATAGCGGAAAGCTCACGTTGAAAACAACTGAGAT
GGAAACTGTTTATGACCTTGGAGTCAAGATGATCAAATCTCTTCAGAAAG
AAAAAGTTACGAGTGGCGATGTCATTACCATTGACAAGGCCACTGGTAAA
ATCACAAAGCTGGGCCGGTCTTTTGCAAGGTCTCGCGATTTCGATGCCAC
AGGCTCCAATATCCGTTTCGTGCAAACGCCGGACGGGGAGCTTCAACGAC
GGAAAGAAGTCGTGCATGTGGTGTCTATTCATGAGATTGATGTCATTAAC
TCCCGGCAGCAGGGATTTTTAGCGTTGTTTTCTGGTGATACGGGTGAAAT
TAAGAGCGAAGTTCGTGAGCAAATTGATATAAAGGTGGCTGAATGGCGAG
AAGAGGGCAAAGCGGAGCTCGTGCCTGGTGTGCTCTTCATTGATGAAGTA
CATATGTTGGATATCGAATGTTTTTCGTTTATCAACAAGGCGATCGAATC
TGATCTGGCTCCTGTGCTCATAATGGCGTCGAACAGGGGGATTACCTACA
TTCGAGGCACAAAATACAAAGCTCCTCATGGATTACCATTGGATCTTTTA
GATAGACTGCTTATCATCAGCACGAAACCATATGAGGAAAAGGAAGTTGA
TGAGATTTTGAGGTTGCGATGCGAAGAGGAGGATATTGCTCTTTCTGACA
ATGCAAGGGCATTGTTGACTCGCATAGGCATGGAAACTTCATTACGGTAC
GCTATGTATCTCATCACATCTTCGGCTCTCGTCTGTGCGAAACGCAATGG
AACAGAAGTGGACGTCGAAGATATAAAACGGACGTATGCATTGTTTTCGG
ATGTGAAGCGCAGCACTCAGACTTTAGCGGAGTATCAGGGAGAGTTCATG
TTCAGCAGTAATCAAGAAGCCGTTGCACAGGCTAAAACTCAATCCGGGGA
AGACCCTATGCAAAGCATTGTCCCCGCCCGGTCATAA
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protein sequence of Gvermi7099.t1

>Gvermi7099.t1 ID=Gvermi7099.t1|Name=Gvermi7099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=479bp
MLNSRFEETVKRPGMERIGAHSHIRGLGLDEQLNPAHIGQGLVGQMEARK
AAGLIVRMIQSGKLAGRAILIAGQPGTGKTALAMAMAQALGRDTPFTKIT
ASEVFSLGMSKTEALTQALRRSIGVKIHEETDIIEGEVVELQIDRPLSSQ
STEITHSGKLTLKTTEMETVYDLGVKMIKSLQKEKVTSGDVITIDKATGK
ITKLGRSFARSRDFDATGSNIRFVQTPDGELQRRKEVVHVVSIHEIDVIN
SRQQGFLALFSGDTGEIKSEVREQIDIKVAEWREEGKAELVPGVLFIDEV
HMLDIECFSFINKAIESDLAPVLIMASNRGITYIRGTKYKAPHGLPLDLL
DRLLIISTKPYEEKEVDEILRLRCEEEDIALSDNARALLTRIGMETSLRY
AMYLITSSALVCAKRNGTEVDVEDIKRTYALFSDVKRSTQTLAEYQGEFM
FSSNQEAVAQAKTQSGEDPMQSIVPARS*
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mRNA from alignment at ScGOVlb_24229:1638644..1640080+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7099.t1 ID=Gvermi7099.t1|Name=Gvermi7099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1437bp|location=Sequence derived from alignment at ScGOVlb_24229:1638644..1640080+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGAACTCGCGTTTTGAGGAGACGGTGAAACGACCCGGAATGGAGAG
AATCGGGGCGCACTCGCATATTCGGGGCCTTGGACTGGATGAACAACTGA
ACCCGGCGCATATCGGTCAAGGGCTGGTCGGTCAAATGGAGGCAAGAAAA
GCCGCAGGGCTAATCGTGCGCATGATACAGTCGGGAAAGTTGGCCGGACG
CGCTATTCTCATCGCCGGGCAGCCTGGCACTGGGAAAACGGCCCTTGCGA
TGGCAATGGCCCAGGCCTTGGGGCGTGACACTCCTTTCACTAAAATCACC
GCCAGTGAAGTCTTTTCATTGGGAATGTCAAAGACAGAGGCGCTTACGCA
GGCCTTAAGACGTAGCATCGGGGTCAAGATTCACGAAGAGACTGATATTA
TAGAAGGAGAGGTCGTAGAGCTGCAGATCGATCGTCCTCTTTCGTCACAG
TCTACAGAGATTACTCATAGCGGAAAGCTCACGTTGAAAACAACTGAGAT
GGAAACTGTTTATGACCTTGGAGTCAAGATGATCAAATCTCTTCAGAAAG
AAAAAGTTACGAGTGGCGATGTCATTACCATTGACAAGGCCACTGGTAAA
ATCACAAAGCTGGGCCGGTCTTTTGCAAGGTCTCGCGATTTCGATGCCAC
AGGCTCCAATATCCGTTTCGTGCAAACGCCGGACGGGGAGCTTCAACGAC
GGAAAGAAGTCGTGCATGTGGTGTCTATTCATGAGATTGATGTCATTAAC
TCCCGGCAGCAGGGATTTTTAGCGTTGTTTTCTGGTGATACGGGTGAAAT
TAAGAGCGAAGTTCGTGAGCAAATTGATATAAAGGTGGCTGAATGGCGAG
AAGAGGGCAAAGCGGAGCTCGTGCCTGGTGTGCTCTTCATTGATGAAGTA
CATATGTTGGATATCGAATGTTTTTCGTTTATCAACAAGGCGATCGAATC
TGATCTGGCTCCTGTGCTCATAATGGCGTCGAACAGGGGGATTACCTACA
TTCGAGGCACAAAATACAAAGCTCCTCATGGATTACCATTGGATCTTTTA
GATAGACTGCTTATCATCAGCACGAAACCATATGAGGAAAAGGAAGTTGA
TGAGATTTTGAGGTTGCGATGCGAAGAGGAGGATATTGCTCTTTCTGACA
ATGCAAGGGCATTGTTGACTCGCATAGGCATGGAAACTTCATTACGGTAC
GCTATGTATCTCATCACATCTTCGGCTCTCGTCTGTGCGAAACGCAATGG
AACAGAAGTGGACGTCGAAGATATAAAACGGACGTATGCATTGTTTTCGG
ATGTGAAGCGCAGCACTCAGACTTTAGCGGAGTATCAGGGAGAGTTCATG
TTCAGCAGTAATCAAGAAGCCGTTGCACAGGCTAAAACTCAATCCGGGGA
AGACCCTATGCAAAGCATTGTCCCCGCCCGGTCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1638644..1640080+

>Gvermi7099.t1 ID=Gvermi7099.t1|Name=Gvermi7099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1437bp|location=Sequence derived from alignment at ScGOVlb_24229:1638644..1640080+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGAACTCGCGTTTTGAGGAGACGGTGAAACGACCCGGAATGGAGAG
AATCGGGGCGCACTCGCATATTCGGGGCCTTGGACTGGATGAACAACTGA
ACCCGGCGCATATCGGTCAAGGGCTGGTCGGTCAAATGGAGGCAAGAAAA
GCCGCAGGGCTAATCGTGCGCATGATACAGTCGGGAAAGTTGGCCGGACG
CGCTATTCTCATCGCCGGGCAGCCTGGCACTGGGAAAACGGCCCTTGCGA
TGGCAATGGCCCAGGCCTTGGGGCGTGACACTCCTTTCACTAAAATCACC
GCCAGTGAAGTCTTTTCATTGGGAATGTCAAAGACAGAGGCGCTTACGCA
GGCCTTAAGACGTAGCATCGGGGTCAAGATTCACGAAGAGACTGATATTA
TAGAAGGAGAGGTCGTAGAGCTGCAGATCGATCGTCCTCTTTCGTCACAG
TCTACAGAGATTACTCATAGCGGAAAGCTCACGTTGAAAACAACTGAGAT
GGAAACTGTTTATGACCTTGGAGTCAAGATGATCAAATCTCTTCAGAAAG
AAAAAGTTACGAGTGGCGATGTCATTACCATTGACAAGGCCACTGGTAAA
ATCACAAAGCTGGGCCGGTCTTTTGCAAGGTCTCGCGATTTCGATGCCAC
AGGCTCCAATATCCGTTTCGTGCAAACGCCGGACGGGGAGCTTCAACGAC
GGAAAGAAGTCGTGCATGTGGTGTCTATTCATGAGATTGATGTCATTAAC
TCCCGGCAGCAGGGATTTTTAGCGTTGTTTTCTGGTGATACGGGTGAAAT
TAAGAGCGAAGTTCGTGAGCAAATTGATATAAAGGTGGCTGAATGGCGAG
AAGAGGGCAAAGCGGAGCTCGTGCCTGGTGTGCTCTTCATTGATGAAGTA
CATATGTTGGATATCGAATGTTTTTCGTTTATCAACAAGGCGATCGAATC
TGATCTGGCTCCTGTGCTCATAATGGCGTCGAACAGGGGGATTACCTACA
TTCGAGGCACAAAATACAAAGCTCCTCATGGATTACCATTGGATCTTTTA
GATAGACTGCTTATCATCAGCACGAAACCATATGAGGAAAAGGAAGTTGA
TGAGATTTTGAGGTTGCGATGCGAAGAGGAGGATATTGCTCTTTCTGACA
ATGCAAGGGCATTGTTGACTCGCATAGGCATGGAAACTTCATTACGGTAC
GCTATGTATCTCATCACATCTTCGGCTCTCGTCTGTGCGAAACGCAATGG
AACAGAAGTGGACGTCGAAGATATAAAACGGACGTATGCATTGTTTTCGG
ATGTGAAGCGCAGCACTCAGACTTTAGCGGAGTATCAGGGAGAGTTCATG
TTCAGCAGTAATCAAGAAGCCGTTGCACAGGCTAAAACTCAATCCGGGGA
AGACCCTATGCAAAGCATTGTCCCCGCCCGGTCATAA
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