Gvermi7028.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7028.t1
Unique NameGvermi7028.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length121
Homology
BLAST of Gvermi7028.t1 vs. uniprot
Match: A0A2V3IR84_9FLOR (DNA-directed RNA polymerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR84_9FLOR)

HSP 1 Score: 140 bits (354), Expect = 2.120e-36
Identity = 69/109 (63.30%), Postives = 85/109 (77.98%), Query Frame = 0
Query:   12 DLKDALAVADVSTLFDGLNALSDQPWRTNRNIYDVAQELWRQGGGVAGFVTKTDIEVPSKEDVMKEQLAAFERRKVEMMEWQEQEGGECNDEDMVFDEKKAYIRLRAER 120
            DL+DALA AD+STLFDGLNAL DQ WR N ++Y+VA ELW +GGG AG VTK++ +VPSK D M+EQ+ AFERRK EMM W+ QE  +  +E+ VFDEKKA  +LR ER
Sbjct:  379 DLQDALAGADLSTLFDGLNALGDQAWRVNEDVYEVADELWSRGGGTAGLVTKSNAKVPSKADFMEEQIKAFERRKEEMMAWRAQEESDGEEEEPVFDEKKATRKLRMER 487          
BLAST of Gvermi7028.t1 vs. uniprot
Match: R7QN31_CHOCR (DNA-directed RNA polymerase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN31_CHOCR)

HSP 1 Score: 95.1 bits (235), Expect = 2.360e-20
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 0
Query:   13 LKDALAVADVSTLFDGLNALSDQPWRTNRNIYDVAQELWRQGGGVAGFVTKTDIEVPSKEDVMKEQLAAFER-RKVEMMEWQEQEGGECNDEDMVFDEKKAYIRLRAER 120
            L+ AL  AD+S L+ GLNAL D  W  NR + DVA+ LW  GGG AG VTK D+ VP+K+  M EQLAAF+  +++        EG   ++E+ +FDE KA  RLR ER
Sbjct:  359 LERALNGADLSLLYQGLNALGDTAWTVNRGVLDVAETLWENGGGKAGLVTKQDVAVPNKKKFMAEQLAAFQDDKRLGRPPSDFVEGDVVDEEEYIFDEGKASRRLRFER 467          
BLAST of Gvermi7028.t1 vs. uniprot
Match: M2X4M7_GALSU (DNA-directed RNA polymerase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X4M7_GALSU)

HSP 1 Score: 67.0 bits (162), Expect = 1.680e-10
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 0
Query:   15 DALAVADVSTLFDGLNALSDQPWRTNRNIYDVAQELWRQGGGVAGFVTKTDIEVP 69
            +AL  A++S +++GLNAL   PW+ N  I +VA+ELWR+GGG+AG V +  I+VP
Sbjct:  591 NALRTANLSKVYEGLNALGATPWKVNTKILEVAEELWRRGGGIAGLVNRERIDVP 645          
BLAST of Gvermi7028.t1 vs. uniprot
Match: A0A388LVQ9_CHABU (DNA-directed RNA polymerase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LVQ9_CHABU)

HSP 1 Score: 58.2 bits (139), Expect = 2.140e-7
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 0
Query:   13 LKDALAVADVSTLFDGLNALSDQPWRTNRNIYDVAQELWRQGGGVAGFVTKTDIEVP----SKEDVMKEQLAAFERRKV 87
            LK A     +  ++  LNAL   PWR N+ +  V +E+W +GGG+AG V++ D E+P    S++D    + A F   KV
Sbjct:  837 LKRATYRKTMKPVYQALNALGSTPWRVNKKVAQVVEEIWEKGGGLAGMVSRKDEELPLPPASRDDDAGRRAAKFAASKV 915          
BLAST of Gvermi7028.t1 vs. uniprot
Match: UPI0017832901 (hypothetical protein n=1 Tax=Ensifer sp. ENS04 TaxID=2769281 RepID=UPI0017832901)

HSP 1 Score: 56.2 bits (134), Expect = 9.790e-7
Identity = 22/57 (38.60%), Postives = 36/57 (63.16%), Query Frame = 0
Query:   15 DALAVADVSTLFDGLNALSDQPWRTNRNIYDVAQELWRQGGGVAGFVTKTDIEVPSK 71
            D     D+  +++ LN + + PW+ NR +YDVA+++W    G+A F TK + EVPS+
Sbjct:  297 DDFEALDMPEVYEALNRVQETPWKINRRVYDVAEQVWDMDLGIANFPTKENEEVPSR 353          
BLAST of Gvermi7028.t1 vs. uniprot
Match: F4INQ5_ARATH (DNA-directed RNA polymerase n=3 Tax=Camelineae TaxID=980083 RepID=F4INQ5_ARATH)

HSP 1 Score: 55.8 bits (133), Expect = 1.340e-6
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 0
Query:   25 LFDGLNALSDQPWRTNRNIYDVAQELWRQGGGVAGFVTKTDIEVPSK 71
            +F+ L+ L +  WR NRNI DV + LW  GG +AG V + D+ +P K
Sbjct:  470 VFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEK 516          
BLAST of Gvermi7028.t1 vs. uniprot
Match: RPOT3_ARATH (DNA-directed RNA polymerase 3, chloroplastic n=39 Tax=Brassicaceae TaxID=3700 RepID=RPOT3_ARATH)

HSP 1 Score: 55.8 bits (133), Expect = 1.350e-6
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 0
Query:   25 LFDGLNALSDQPWRTNRNIYDVAQELWRQGGGVAGFVTKTDIEVPSK 71
            +F+ L+ L +  WR NRNI DV + LW  GG +AG V + D+ +P K
Sbjct:  470 VFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEK 516          
BLAST of Gvermi7028.t1 vs. uniprot
Match: Q0QFS1_9EUKA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Stygamoeba sp. ruffled TaxID=373142 RepID=Q0QFS1_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 2.430e-6
Identity = 22/57 (38.60%), Postives = 37/57 (64.91%), Query Frame = 0
Query:   21 DVSTLFDGLNALSDQPWRTNRNIYDVAQELWRQGGGVAGFVTKTDIEVPSKEDVMKE 77
            D+S ++  L+ LS  PW+ N+ +  VAQELW++GGG+    ++TD+ +P   D  K+
Sbjct:  139 DLSNVYRSLDELSAVPWKINKRVLRVAQELWQRGGGIGDLPSRTDLPLPEAPDNYKD 195          
BLAST of Gvermi7028.t1 vs. uniprot
Match: A0A7S1ZZ68_TRICV (DNA-directed RNA polymerase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZ68_TRICV)

HSP 1 Score: 54.3 bits (129), Expect = 3.680e-6
Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 0
Query:   14 KDALAVADVSTLFDGLNALSDQPWRTNRNIYDVAQELWRQGGGVAGFVTKTDIEVPS--KEDVMKEQLAAF-----ERRKVEMMEW 92
            K+AL +AD++T++ GLN L   PW  N+   D A+  W +G  +    ++TD EVP   +    KE+  A+     E  KVE  EW
Sbjct:  139 KEALKLADLTTVYSGLNVLGSVPWVINKFTLDAARRCWEEGISLGDIPSRTDFEVPPLPERPEGKEKGRAYTEEEKEAFKVEYREW 224          
BLAST of Gvermi7028.t1 vs. uniprot
Match: A0A151Z5F9_9MYCE (DNA-directed RNA polymerase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z5F9_9MYCE)

HSP 1 Score: 53.5 bits (127), Expect = 8.680e-6
Identity = 22/54 (40.74%), Postives = 33/54 (61.11%), Query Frame = 0
Query:   20 ADVSTLFDGLNALSDQPWRTNRNIYDVAQELWRQGGGVAGFVTKTDIEVPSKED 73
            AD++ ++DGLNAL + PW  N+ +Y V  E W  GGG+     ++D E+P   D
Sbjct:  435 ADLTHIYDGLNALGETPWVINQKVYKVINECWVNGGGLGEIPKRSDHELPQIPD 488          
The following BLAST results are available for this feature:
BLAST of Gvermi7028.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2V3IR84_9FLOR2.120e-3663.30DNA-directed RNA polymerase n=1 Tax=Gracilariopsis... [more]
R7QN31_CHOCR2.360e-2048.62DNA-directed RNA polymerase n=1 Tax=Chondrus crisp... [more]
M2X4M7_GALSU1.680e-1050.91DNA-directed RNA polymerase n=1 Tax=Galdieria sulp... [more]
A0A388LVQ9_CHABU2.140e-736.71DNA-directed RNA polymerase n=1 Tax=Chara braunii ... [more]
UPI00178329019.790e-738.60hypothetical protein n=1 Tax=Ensifer sp. ENS04 Tax... [more]
F4INQ5_ARATH1.340e-644.68DNA-directed RNA polymerase n=3 Tax=Camelineae Tax... [more]
RPOT3_ARATH1.350e-644.68DNA-directed RNA polymerase 3, chloroplastic n=39 ... [more]
Q0QFS1_9EUKA2.430e-638.60DNA-directed RNA polymerase (Fragment) n=1 Tax=Sty... [more]
A0A7S1ZZ68_TRICV3.680e-636.05DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri... [more]
A0A151Z5F9_9MYCE8.680e-640.74DNA-directed RNA polymerase n=1 Tax=Tieghemosteliu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024075DNA-directed RNA polymerase, helix hairpin domain superfamilyGENE3D1.10.287.260coord: 35..99
e-value: 5.0E-5
score: 25.6
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 13..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1006062..1015311 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7028.t1Gvermi7028.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 1006062..1015311 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7028.t1 ID=Gvermi7028.t1|Name=Gvermi7028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=121bp
MIKDPFKHILIDLKDALAVADVSTLFDGLNALSDQPWRTNRNIYDVAQEL
WRQGGGVAGFVTKTDIEVPSKEDVMKEQLAAFERRKVEMMEWQEQEGGEC
NDEDMVFDEKKAYIRLRAER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024075DNA-dir_RNA_pol_helix_hairp_sf
IPR043502DNA/RNA_pol_sf