Gvermi7065.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7065.t1
Unique NameGvermi7065.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1428482..1429108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7065Gvermi7065Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1428482..1429108 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7065.t1.stop1Gvermi7065.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1428482..1428484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7065.t1.CDS1Gvermi7065.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1428482..1429108 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7065.t1.exon1Gvermi7065.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1428482..1429108 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7065.t1.start1Gvermi7065.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1429106..1429108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7065.t1Gvermi7065.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1428482..1429108 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7065.t1 ID=Gvermi7065.t1|Name=Gvermi7065.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=209bp
MCSALFPIFLVCVALCQLAVLGMPTMPANAAASSEQPCLLVNDASKLGLP
LPLNYEAAAILLTCSFKQGSVVTHNSGRRGYTSSRVVCDERPLISYDEQA
DRIQASASGIPVYCENGVCVFYHSIGSQVLLSALIDEGEVARIQSTSAQI
PFLRTTVRFAFNGMLETFAKRILSAFMKNVTGEIDLRAVAFLASEESTCS
IPSTPCTC*
back to top

spliced messenger RNA

>Gvermi7065.t1 ID=Gvermi7065.t1|Name=Gvermi7065.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=627bp|location=Sequence derived from alignment at ScGOVlb_24229:1428482..1429108- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTAGCGCTCTTTTCCCCATCTTCCTTGTGTGCGTCGCATTGTGCCA
GCTCGCAGTGCTTGGAATGCCCACGATGCCGGCTAACGCAGCTGCCTCTT
CCGAGCAACCTTGTCTGCTCGTTAACGACGCATCGAAACTTGGTCTTCCG
CTCCCCTTAAACTACGAAGCAGCCGCTATTTTGCTCACGTGCTCTTTCAA
GCAAGGCTCTGTCGTCACGCACAACTCTGGTAGACGAGGTTACACAAGCT
CGCGAGTGGTCTGCGATGAGAGGCCGTTAATCTCATATGACGAGCAGGCT
GACCGCATTCAGGCCTCTGCTTCTGGAATCCCCGTCTACTGCGAGAACGG
CGTGTGCGTGTTTTATCATTCAATTGGCTCCCAAGTTCTACTGTCTGCGT
TAATTGATGAGGGAGAAGTAGCTCGGATTCAATCGACTTCGGCCCAGATT
CCGTTCCTGAGAACTACGGTGAGATTTGCATTCAATGGTATGCTAGAAAC
GTTTGCGAAGAGAATTCTTTCGGCTTTCATGAAGAACGTGACTGGTGAGA
TTGATCTCCGCGCTGTTGCATTTCTGGCCTCTGAAGAGAGCACATGCTCG
ATACCGAGCACCCCATGCACCTGCTAG
back to top

protein sequence of Gvermi7065.t1

>Gvermi7065.t1 ID=Gvermi7065.t1|Name=Gvermi7065.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=209bp
MCSALFPIFLVCVALCQLAVLGMPTMPANAAASSEQPCLLVNDASKLGLP
LPLNYEAAAILLTCSFKQGSVVTHNSGRRGYTSSRVVCDERPLISYDEQA
DRIQASASGIPVYCENGVCVFYHSIGSQVLLSALIDEGEVARIQSTSAQI
PFLRTTVRFAFNGMLETFAKRILSAFMKNVTGEIDLRAVAFLASEESTCS
IPSTPCTC*
back to top

mRNA from alignment at ScGOVlb_24229:1428482..1429108-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7065.t1 ID=Gvermi7065.t1|Name=Gvermi7065.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=627bp|location=Sequence derived from alignment at ScGOVlb_24229:1428482..1429108- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTAGCGCTCTTTTCCCCATCTTCCTTGTGTGCGTCGCATTGTGCCA
GCTCGCAGTGCTTGGAATGCCCACGATGCCGGCTAACGCAGCTGCCTCTT
CCGAGCAACCTTGTCTGCTCGTTAACGACGCATCGAAACTTGGTCTTCCG
CTCCCCTTAAACTACGAAGCAGCCGCTATTTTGCTCACGTGCTCTTTCAA
GCAAGGCTCTGTCGTCACGCACAACTCTGGTAGACGAGGTTACACAAGCT
CGCGAGTGGTCTGCGATGAGAGGCCGTTAATCTCATATGACGAGCAGGCT
GACCGCATTCAGGCCTCTGCTTCTGGAATCCCCGTCTACTGCGAGAACGG
CGTGTGCGTGTTTTATCATTCAATTGGCTCCCAAGTTCTACTGTCTGCGT
TAATTGATGAGGGAGAAGTAGCTCGGATTCAATCGACTTCGGCCCAGATT
CCGTTCCTGAGAACTACGGTGAGATTTGCATTCAATGGTATGCTAGAAAC
GTTTGCGAAGAGAATTCTTTCGGCTTTCATGAAGAACGTGACTGGTGAGA
TTGATCTCCGCGCTGTTGCATTTCTGGCCTCTGAAGAGAGCACATGCTCG
ATACCGAGCACCCCATGCACCTGCTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:1428482..1429108-

>Gvermi7065.t1 ID=Gvermi7065.t1|Name=Gvermi7065.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=627bp|location=Sequence derived from alignment at ScGOVlb_24229:1428482..1429108- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTAGCGCTCTTTTCCCCATCTTCCTTGTGTGCGTCGCATTGTGCCA
GCTCGCAGTGCTTGGAATGCCCACGATGCCGGCTAACGCAGCTGCCTCTT
CCGAGCAACCTTGTCTGCTCGTTAACGACGCATCGAAACTTGGTCTTCCG
CTCCCCTTAAACTACGAAGCAGCCGCTATTTTGCTCACGTGCTCTTTCAA
GCAAGGCTCTGTCGTCACGCACAACTCTGGTAGACGAGGTTACACAAGCT
CGCGAGTGGTCTGCGATGAGAGGCCGTTAATCTCATATGACGAGCAGGCT
GACCGCATTCAGGCCTCTGCTTCTGGAATCCCCGTCTACTGCGAGAACGG
CGTGTGCGTGTTTTATCATTCAATTGGCTCCCAAGTTCTACTGTCTGCGT
TAATTGATGAGGGAGAAGTAGCTCGGATTCAATCGACTTCGGCCCAGATT
CCGTTCCTGAGAACTACGGTGAGATTTGCATTCAATGGTATGCTAGAAAC
GTTTGCGAAGAGAATTCTTTCGGCTTTCATGAAGAACGTGACTGGTGAGA
TTGATCTCCGCGCTGTTGCATTTCTGGCCTCTGAAGAGAGCACATGCTCG
ATACCGAGCACCCCATGCACCTGCTAG
back to top