Gvermi6936.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6936.t1
Unique NameGvermi6936.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:692803..693792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ27870
PFAMsDnaJ,DnaJ_C
Max annot lvl35493|Streptophyta
KEGG koko:K09510
GOsGO:0001671,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0008047,GO:0008150,GO:0016020,GO:0030234,GO:0031974,GO:0031981,GO:0032781,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0050790,GO:0051087,GO:0051336,GO:0051345,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0070013,GO:0071944,GO:0098772
Evalue2.13e-91
EggNOG OGsCOG0484@1|root,KOG0714@2759|Eukaryota,37RT4@33090|Viridiplantae,3G7UU@35493|Streptophyta
DescriptionDnaJ homolog subfamily B member
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6936Gvermi6936Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 692803..693792 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6936.t1.start1Gvermi6936.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 692803..692805 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6936.t1.CDS1Gvermi6936.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 692803..693792 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6936.t1.exon1Gvermi6936.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 692803..693792 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6936.t1.stop1Gvermi6936.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 693790..693792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6936.t1Gvermi6936.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 692803..693792 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6936.t1 ID=Gvermi6936.t1|Name=Gvermi6936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=330bp
MGRDYYSILGVSRSATADDLKKAYRRNAMKWHPDKNPDNKPEAEKKFQEI
AEAYQVLSDPKKKEIYDNYGEDALKSGMDEMPRSAPGNFRFTSNTTNMRD
ANDLFNEIFGNMGGFGGMSGMGGMGGMGGFSSMGGGPQGFSSFSSSRAPR
KQPDTEVSLYLSLEELYTGTTKKLKITRNVARADGGADRVAKVHEVFIKP
GYKAGTKIRYNGAGSEAPGYLPGDVIFIIQEKPHSEFKRNGNNLEYTHRI
RLADALAGSTVTIPGLDGRAFRLDCPEVITPQTVKTISGAGMPISKSPGQ
KGDLIVKFDVVFPTYLQPGKRERLRELLS*
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spliced messenger RNA

>Gvermi6936.t1 ID=Gvermi6936.t1|Name=Gvermi6936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=990bp|location=Sequence derived from alignment at ScGOVlb_24229:692803..693792+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGGGACTACTACTCTATACTTGGGGTCAGTCGCAGTGCCACAGC
CGACGACCTCAAGAAGGCCTACCGCAGAAACGCCATGAAGTGGCACCCCG
ACAAGAACCCGGACAACAAGCCAGAAGCCGAGAAGAAGTTCCAGGAGATT
GCCGAGGCCTACCAGGTGCTCTCCGATCCGAAGAAGAAGGAGATATACGA
CAACTACGGCGAGGATGCCCTGAAGTCAGGCATGGACGAAATGCCCCGCA
GTGCGCCTGGCAACTTCAGGTTCACCTCCAATACCACCAACATGAGGGAC
GCCAATGATCTCTTCAACGAGATCTTTGGCAACATGGGAGGCTTTggcgg
catgagtggcatgggcggcatgggcggcatgggcggcTTCAGTTCGATGG
GAGGAGGTCCTCAAGGCTTCTCCTCCTTTTCCAGTAGCCGCGCTCCACGA
AAACAGCCTGATACAGAAGTATCCCTCTACCTCTCCCTCGAAGAACTCTA
CACTGGTACAACTAAAAAACTAAAGATTACTCGAAACGTGGCCCGCGCGG
ATGGTGGCGCCGACAGAGTCGCCAAGGTCCATGAGGTGTTTATAAAACCG
GGCTACAAGGCCGGTACCAAAATTCGCTACAACGGAGCAGGAAGCGAGGC
ACCGGGGTATCTCCCAGGCGACGTCATCTTCATCATTCAGGAGAAACCGC
ACAGCGAATTCAAACGCAACGGAAACAATCTCGAGTATACTCACCGCATA
CGTCTGGCAGATGCACTTGCGGGGAGCACCGTAACAATCCCAGGACTTGA
TGGAAGAGCGTTCCGTCTGGACTGTCCGGAAGTCATTACTCCCCAAACTG
TGAAGACTATATCTGGAGCTGGAATGCCCATATCTAAGAGTCCCGGACAG
AAGGGAGACCTCATTGTCAAGTTCGACGTTGTATTCCCAACTTATTTGCA
ACCTGGAAAGCGTGAGCGACTACGGGAACTTCTTTCATAA
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protein sequence of Gvermi6936.t1

>Gvermi6936.t1 ID=Gvermi6936.t1|Name=Gvermi6936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=330bp
MGRDYYSILGVSRSATADDLKKAYRRNAMKWHPDKNPDNKPEAEKKFQEI
AEAYQVLSDPKKKEIYDNYGEDALKSGMDEMPRSAPGNFRFTSNTTNMRD
ANDLFNEIFGNMGGFGGMSGMGGMGGMGGFSSMGGGPQGFSSFSSSRAPR
KQPDTEVSLYLSLEELYTGTTKKLKITRNVARADGGADRVAKVHEVFIKP
GYKAGTKIRYNGAGSEAPGYLPGDVIFIIQEKPHSEFKRNGNNLEYTHRI
RLADALAGSTVTIPGLDGRAFRLDCPEVITPQTVKTISGAGMPISKSPGQ
KGDLIVKFDVVFPTYLQPGKRERLRELLS*
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mRNA from alignment at ScGOVlb_24229:692803..693792+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6936.t1 ID=Gvermi6936.t1|Name=Gvermi6936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=990bp|location=Sequence derived from alignment at ScGOVlb_24229:692803..693792+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCAGGGACTACTACTCTATACTTGGGGTCAGTCGCAGTGCCACAGC
CGACGACCTCAAGAAGGCCTACCGCAGAAACGCCATGAAGTGGCACCCCG
ACAAGAACCCGGACAACAAGCCAGAAGCCGAGAAGAAGTTCCAGGAGATT
GCCGAGGCCTACCAGGTGCTCTCCGATCCGAAGAAGAAGGAGATATACGA
CAACTACGGCGAGGATGCCCTGAAGTCAGGCATGGACGAAATGCCCCGCA
GTGCGCCTGGCAACTTCAGGTTCACCTCCAATACCACCAACATGAGGGAC
GCCAATGATCTCTTCAACGAGATCTTTGGCAACATGGGAGGCTTTggcgg
catgagtggcatgggcggcatgggcggcatgggcggcTTCAGTTCGATGG
GAGGAGGTCCTCAAGGCTTCTCCTCCTTTTCCAGTAGCCGCGCTCCACGA
AAACAGCCTGATACAGAAGTATCCCTCTACCTCTCCCTCGAAGAACTCTA
CACTGGTACAACTAAAAAACTAAAGATTACTCGAAACGTGGCCCGCGCGG
ATGGTGGCGCCGACAGAGTCGCCAAGGTCCATGAGGTGTTTATAAAACCG
GGCTACAAGGCCGGTACCAAAATTCGCTACAACGGAGCAGGAAGCGAGGC
ACCGGGGTATCTCCCAGGCGACGTCATCTTCATCATTCAGGAGAAACCGC
ACAGCGAATTCAAACGCAACGGAAACAATCTCGAGTATACTCACCGCATA
CGTCTGGCAGATGCACTTGCGGGGAGCACCGTAACAATCCCAGGACTTGA
TGGAAGAGCGTTCCGTCTGGACTGTCCGGAAGTCATTACTCCCCAAACTG
TGAAGACTATATCTGGAGCTGGAATGCCCATATCTAAGAGTCCCGGACAG
AAGGGAGACCTCATTGTCAAGTTCGACGTTGTATTCCCAACTTATTTGCA
ACCTGGAAAGCGTGAGCGACTACGGGAACTTCTTTCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:692803..693792+

>Gvermi6936.t1 ID=Gvermi6936.t1|Name=Gvermi6936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=990bp|location=Sequence derived from alignment at ScGOVlb_24229:692803..693792+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCAGGGACTACTACTCTATACTTGGGGTCAGTCGCAGTGCCACAGC
CGACGACCTCAAGAAGGCCTACCGCAGAAACGCCATGAAGTGGCACCCCG
ACAAGAACCCGGACAACAAGCCAGAAGCCGAGAAGAAGTTCCAGGAGATT
GCCGAGGCCTACCAGGTGCTCTCCGATCCGAAGAAGAAGGAGATATACGA
CAACTACGGCGAGGATGCCCTGAAGTCAGGCATGGACGAAATGCCCCGCA
GTGCGCCTGGCAACTTCAGGTTCACCTCCAATACCACCAACATGAGGGAC
GCCAATGATCTCTTCAACGAGATCTTTGGCAACATGGGAGGCTTTggcgg
catgagtggcatgggcggcatgggcggcatgggcggcTTCAGTTCGATGG
GAGGAGGTCCTCAAGGCTTCTCCTCCTTTTCCAGTAGCCGCGCTCCACGA
AAACAGCCTGATACAGAAGTATCCCTCTACCTCTCCCTCGAAGAACTCTA
CACTGGTACAACTAAAAAACTAAAGATTACTCGAAACGTGGCCCGCGCGG
ATGGTGGCGCCGACAGAGTCGCCAAGGTCCATGAGGTGTTTATAAAACCG
GGCTACAAGGCCGGTACCAAAATTCGCTACAACGGAGCAGGAAGCGAGGC
ACCGGGGTATCTCCCAGGCGACGTCATCTTCATCATTCAGGAGAAACCGC
ACAGCGAATTCAAACGCAACGGAAACAATCTCGAGTATACTCACCGCATA
CGTCTGGCAGATGCACTTGCGGGGAGCACCGTAACAATCCCAGGACTTGA
TGGAAGAGCGTTCCGTCTGGACTGTCCGGAAGTCATTACTCCCCAAACTG
TGAAGACTATATCTGGAGCTGGAATGCCCATATCTAAGAGTCCCGGACAG
AAGGGAGACCTCATTGTCAAGTTCGACGTTGTATTCCCAACTTATTTGCA
ACCTGGAAAGCGTGAGCGACTACGGGAACTTCTTTCATAA
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