Gvermi6919.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6919.t1
Unique Name	Gvermi6919.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	409

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:465729..466955 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	264402.Cagra.0878s0014.1.p
PFAMs	Methyltransf_29
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0012505,GO:0016740,GO:0016741,GO:0031410,GO:0031982,GO:0031984,GO:0032259,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
Evalue	6.18e-16
EggNOG OGs	28I6U@1\|root,2QTJJ@2759\|Eukaryota,37M9Q@33090\|Viridiplantae,3GB2X@35493\|Streptophyta,3HPPB@3699\|Brassicales
Description	methyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6919	Gvermi6919	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 465729..466955 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6919.t1.start1	Gvermi6919.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 465729..465731 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6919.t1.CDS1	Gvermi6919.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 465729..466955 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6919.t1.exon1	Gvermi6919.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 465729..466955 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6919.t1.stop1	Gvermi6919.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 466953..466955 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6919.t1	Gvermi6919.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 465729..466955 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:465729..466955+
coding sequence from alignment at ScGOVlb_24229:465729..466955+

mRNA sequence

>Gvermi6919.t1 ID=Gvermi6919.t1|Name=Gvermi6919.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=409bp
LANVGELDTSNPEYRLHLANQRWARLEAHEINIREEGGTSGRSFTDNFVY
VKFLLQQLKPISRCAPDSPLVMLDTGAGIGSVAAALVDKRGGDGAIKALS
YVWPDDYLRLQTIISDRGLPSFLANFTGSLPFPSSTFDIVHCKWCWHHIA
GYGTWLKEVNRLLIPGGFFIFTFAPEGTELLEHPRWEKALAQQPFICKRV
HRIVTMCQKHRAVAKKENNGDRFRRAVYCPKGLEKSMSRSKRRLQARMLN
VENELMLTAKAMKEESKNSTARVLNVNCPDAVLCKSLDSIPNVSVLHVNQ
KSQNQVVRGILSLGGLGMLHEWKNNVPVYPRSFDVVILGCNRRSKHFLGQ
QQFWFELNRVLRPGGLVILMRSFCRWYFSMPVKPLGFHTKRITNDFYLSR
RLEMREFT*

spliced messenger RNA

>Gvermi6919.t1 ID=Gvermi6919.t1|Name=Gvermi6919.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at ScGOVlb_24229:465729..466955+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCCAATGTCGGTGAGCTTGACACAAGTAACCCCGAGTATCGACTTCA
TCTTGCAAACCAAAGATGGGCGCGACTAGAGGCACATGAGATCAACATAC
GCGAAGAGGGTGGAACTTCTGGCAGATCATTTACAGACAACTTTGTATAT
GTGAAGTTCTTACTTCAACAGCTCAAACCCATATCTCGGTGTGCACCTGA
TTCCCCTCTCGTGATGTTGGATACGGGAGCCGGTATAGGCTCCGTTGCAG
CAGCTCTGGTTGATAAACGTGGTGGGGATGGCGCTATCAAAGCGCTCTCT
TACGTTTGGCCGGATGATTACCTTAGATTGCAAACGATCATCTCCGACAG
AGGACTTCCTTCTTTCTTGGCCAACTTCACAGGATCATTACCGTTTCCTT
CTTCGACATTCGATATCGTACACTGTAAATGGTGTTGGCATCACATCGCA
GGTTACGGCACATGGTTGAAGGAGGTTAATCGTCTGTTGATACCAGGAGG
TTTCTTCATTTTTACTTTTGCTCCGGAAGGAACAGAGTTGCTTGAGCATC
CGAGATGGGAAAAAGCATTGGCCCAACAGCCCTTTATATGCAAAAGAGTC
CATAGAATCGTTACTATGTGCCAAAAGCATCGTGCCGTGGCCAAAAAGGA
GAACAATGGGGATCGTTTCCGAAGAGCAGTATACTGCCCCAAGGGCCTTG
AGAAGTCGATGTCGAGATCGAAAAGGAGGCTTCAAGCCAGAATGCTGAAT
GTGGAGAACGAGCTCATGCTGACAGCCAAAGCGATGAAAGAGGAATCAAA
AAATAGCACGGCGAGAGTTTTGAATGTTAACTGTCCAGATGCGGTACTGT
GCAAGAGTTTGGATTCTATTCCCAACGTTAGTGTGCTTCATGTGAATCAA
AAGTCTCAGAACCAAGTTGTGAGAGGCATTCTCAGCCTAGGAGGCCTGGG
AATGTTGCACGAATGGAAGAATAATGTTCCTGTGTATCCACGATCATTTG
ATGTTGTGATCCTTGGCTGCAATCGACGATCAAAGCATTTTCTCGGGCAA
CAACAGTTTTGGTTTGAACTCAATCGAGTGCTCAGACCGGGGGGTTTGGT
AATTCTGATGAGAAGTTTTTGTCGATGGTACTTCAGTATGCCTGTGAAAC
CGCTTGGGTTTCACACGAAGAGGATTACGAACGACTTCTATCTTTCAAGA
AGACTCGAAATGCGAGAATTCACATGA

protein sequence of Gvermi6919.t1

>Gvermi6919.t1 ID=Gvermi6919.t1|Name=Gvermi6919.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=409bp
LANVGELDTSNPEYRLHLANQRWARLEAHEINIREEGGTSGRSFTDNFVY
VKFLLQQLKPISRCAPDSPLVMLDTGAGIGSVAAALVDKRGGDGAIKALS
YVWPDDYLRLQTIISDRGLPSFLANFTGSLPFPSSTFDIVHCKWCWHHIA
GYGTWLKEVNRLLIPGGFFIFTFAPEGTELLEHPRWEKALAQQPFICKRV
HRIVTMCQKHRAVAKKENNGDRFRRAVYCPKGLEKSMSRSKRRLQARMLN
VENELMLTAKAMKEESKNSTARVLNVNCPDAVLCKSLDSIPNVSVLHVNQ
KSQNQVVRGILSLGGLGMLHEWKNNVPVYPRSFDVVILGCNRRSKHFLGQ
QQFWFELNRVLRPGGLVILMRSFCRWYFSMPVKPLGFHTKRITNDFYLSR
RLEMREFT*

mRNA from alignment at ScGOVlb_24229:465729..466955+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6919.t1 ID=Gvermi6919.t1|Name=Gvermi6919.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at ScGOVlb_24229:465729..466955+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGCCAATGTCGGTGAGCTTGACACAAGTAACCCCGAGTATCGACTTCA
TCTTGCAAACCAAAGATGGGCGCGACTAGAGGCACATGAGATCAACATAC
GCGAAGAGGGTGGAACTTCTGGCAGATCATTTACAGACAACTTTGTATAT
GTGAAGTTCTTACTTCAACAGCTCAAACCCATATCTCGGTGTGCACCTGA
TTCCCCTCTCGTGATGTTGGATACGGGAGCCGGTATAGGCTCCGTTGCAG
CAGCTCTGGTTGATAAACGTGGTGGGGATGGCGCTATCAAAGCGCTCTCT
TACGTTTGGCCGGATGATTACCTTAGATTGCAAACGATCATCTCCGACAG
AGGACTTCCTTCTTTCTTGGCCAACTTCACAGGATCATTACCGTTTCCTT
CTTCGACATTCGATATCGTACACTGTAAATGGTGTTGGCATCACATCGCA
GGTTACGGCACATGGTTGAAGGAGGTTAATCGTCTGTTGATACCAGGAGG
TTTCTTCATTTTTACTTTTGCTCCGGAAGGAACAGAGTTGCTTGAGCATC
CGAGATGGGAAAAAGCATTGGCCCAACAGCCCTTTATATGCAAAAGAGTC
CATAGAATCGTTACTATGTGCCAAAAGCATCGTGCCGTGGCCAAAAAGGA
GAACAATGGGGATCGTTTCCGAAGAGCAGTATACTGCCCCAAGGGCCTTG
AGAAGTCGATGTCGAGATCGAAAAGGAGGCTTCAAGCCAGAATGCTGAAT
GTGGAGAACGAGCTCATGCTGACAGCCAAAGCGATGAAAGAGGAATCAAA
AAATAGCACGGCGAGAGTTTTGAATGTTAACTGTCCAGATGCGGTACTGT
GCAAGAGTTTGGATTCTATTCCCAACGTTAGTGTGCTTCATGTGAATCAA
AAGTCTCAGAACCAAGTTGTGAGAGGCATTCTCAGCCTAGGAGGCCTGGG
AATGTTGCACGAATGGAAGAATAATGTTCCTGTGTATCCACGATCATTTG
ATGTTGTGATCCTTGGCTGCAATCGACGATCAAAGCATTTTCTCGGGCAA
CAACAGTTTTGGTTTGAACTCAATCGAGTGCTCAGACCGGGGGGTTTGGT
AATTCTGATGAGAAGTTTTTGTCGATGGTACTTCAGTATGCCTGTGAAAC
CGCTTGGGTTTCACACGAAGAGGATTACGAACGACTTCTATCTTTCAAGA
AGACTCGAAATGCGAGAATTCACATGA

Coding sequence (CDS) from alignment at ScGOVlb_24229:465729..466955+

>Gvermi6919.t1 ID=Gvermi6919.t1|Name=Gvermi6919.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1227bp|location=Sequence derived from alignment at ScGOVlb_24229:465729..466955+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGCCAATGTCGGTGAGCTTGACACAAGTAACCCCGAGTATCGACTTCA
TCTTGCAAACCAAAGATGGGCGCGACTAGAGGCACATGAGATCAACATAC
GCGAAGAGGGTGGAACTTCTGGCAGATCATTTACAGACAACTTTGTATAT
GTGAAGTTCTTACTTCAACAGCTCAAACCCATATCTCGGTGTGCACCTGA
TTCCCCTCTCGTGATGTTGGATACGGGAGCCGGTATAGGCTCCGTTGCAG
CAGCTCTGGTTGATAAACGTGGTGGGGATGGCGCTATCAAAGCGCTCTCT
TACGTTTGGCCGGATGATTACCTTAGATTGCAAACGATCATCTCCGACAG
AGGACTTCCTTCTTTCTTGGCCAACTTCACAGGATCATTACCGTTTCCTT
CTTCGACATTCGATATCGTACACTGTAAATGGTGTTGGCATCACATCGCA
GGTTACGGCACATGGTTGAAGGAGGTTAATCGTCTGTTGATACCAGGAGG
TTTCTTCATTTTTACTTTTGCTCCGGAAGGAACAGAGTTGCTTGAGCATC
CGAGATGGGAAAAAGCATTGGCCCAACAGCCCTTTATATGCAAAAGAGTC
CATAGAATCGTTACTATGTGCCAAAAGCATCGTGCCGTGGCCAAAAAGGA
GAACAATGGGGATCGTTTCCGAAGAGCAGTATACTGCCCCAAGGGCCTTG
AGAAGTCGATGTCGAGATCGAAAAGGAGGCTTCAAGCCAGAATGCTGAAT
GTGGAGAACGAGCTCATGCTGACAGCCAAAGCGATGAAAGAGGAATCAAA
AAATAGCACGGCGAGAGTTTTGAATGTTAACTGTCCAGATGCGGTACTGT
GCAAGAGTTTGGATTCTATTCCCAACGTTAGTGTGCTTCATGTGAATCAA
AAGTCTCAGAACCAAGTTGTGAGAGGCATTCTCAGCCTAGGAGGCCTGGG
AATGTTGCACGAATGGAAGAATAATGTTCCTGTGTATCCACGATCATTTG
ATGTTGTGATCCTTGGCTGCAATCGACGATCAAAGCATTTTCTCGGGCAA
CAACAGTTTTGGTTTGAACTCAATCGAGTGCTCAGACCGGGGGGTTTGGT
AATTCTGATGAGAAGTTTTTGTCGATGGTACTTCAGTATGCCTGTGAAAC
CGCTTGGGTTTCACACGAAGAGGATTACGAACGACTTCTATCTTTCAAGA
AGACTCGAAATGCGAGAATTCACATGA