Gvermi7079.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7079.t1
Unique NameGvermi7079.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length466
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1525655..1527052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_5989
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue2.67e-15
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7079Gvermi7079Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1525655..1527052 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7079.t1.start1Gvermi7079.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1525655..1525657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7079.t1.CDS1Gvermi7079.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1525655..1527052 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7079.t1.exon1Gvermi7079.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1525655..1527052 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7079.t1.stop1Gvermi7079.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1527050..1527052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7079.t1Gvermi7079.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1525655..1527052 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7079.t1 ID=Gvermi7079.t1|Name=Gvermi7079.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=466bp
MHSYFAFVVHPQSGDVLTDDSYGLPSVVHGDITSDLHTLCSTVQNLIHNT
YRLILLRAECQVRECPTDQHRNPLFSMYLNQLLIFGIVSGDSNPVPRGFQ
WIPREKSSLIVTKPTDSPVAQFLQQYKKSGLLVNLDRLHPYSRPGWFEEV
ASWIRITAFRHNYCVNDIQQVSKTGYASVLRATCASDSSLYFKHVGPTVF
FDEIRTLLRLSEHMPDNFEKPIAVDTGRKWMLLRDQGSPFPVSAYSVKTN
RHLFQRALRKWATIQKQSIALTGKLIDSGVVRMDSENMQIAMHQLVSDSE
WCSLLASEIANAGNAAALNCVRANKLLIHETKRLWDKASSYNIPMALVHG
EMAPGNVVVNQKDEISFINFGSTCVSFPLRDAVSFAFACDANEDDLNFYF
EMWAEYETVERMKELFQVLNSLMQLDMARALYRQFLMAEQSNRMSSLSNL
RTYIRFLLKWLKTCL*
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spliced messenger RNA

>Gvermi7079.t1 ID=Gvermi7079.t1|Name=Gvermi7079.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at ScGOVlb_24229:1525655..1527052+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTCATATTTCGCGTTCGTCGTTCACCCTCAAAGTGGTGACGTTCT
CACCGACGACAGCTATGGCCTACCCTCCGTAGTTCATGGCGATATCACCT
CCGATCTGCATACGCTCTGCTCAACTGTGCAAAACCTTATCCACAATACC
TACCGCTTGATTCTTTTGCGAGCAGAGTGCCAAGTCCGAGAATGCCCCAC
TGACCAACACCGAAACCCTCTATTCTCCATGTATCTGAATCAACTACTGA
TATTCGGCATTGTATCAGGTGATTCGAATCCGGTCCCGAGAGGATTCCAG
TGGATTCCCCGCGAGAAATCGTCCCTTATAGTCACCAAGCCAACAGATTC
ACCTGTCGCCCAGTTCCTCCAGCAATACAAGAAATCGGGGCTGCTGGTCA
ACTTGGACCGCCTCCACCCTTACTCCCGCCCCGGATGGTTTGAAGAAGTC
GCGTCTTGGATCAGAATCACAGCGTTTCGGCATAATTACTGCGTCAACGA
TATCCAACAAGTCTCCAAAACAGGGTACGCCAGCGTTTTGCGCGCCACGT
GCGCAAGCGACTCTTCGCTTTATTTCAAACATGTCGGACCCACTGTTTTC
TTTGACGAGATTCGAACGCTGTTGCGTTTGTCCGAACACATGCCCGACAA
CTTCGAAAAGCCAATAGCAGTGGACACTGGCCGAAAATGGATGCTACTAC
GGGATCAAGGCTCGCCTTTTCCGGTGAGCGCATACTCTGTGAAGACGAAT
CGTCACCTCTTCCAAAGAGCGCTGCGAAAATGGGCGACGATTCAGAAGCA
GTCGATTGCCTTGACCGGCAAGCTTATTGATTCTGGCGTGGTTCGCATGG
ATTCGGAAAACATGCAGATTGCGATGCACCAGTTGGTGTCCGATTCTGAG
TGGTGCTCCTTGCTGGCTAGCGAAATTGCCAACGCGGGAAACGCCGCGGC
ATTGAACTGCGTCCGGGCTAACAAACTGCTCATCCACGAGACTAAAAGAT
TATGGGATAAAGCTTCGAGTTACAACATACCAATGGCGCTTGTTCATGGA
GAAATGGCTCCGGGAAATGTTGTGGTCAACCAGAAGGACGAGATCAGCTT
CATCAATTTTGGCTCCACATGCGTTTCTTTTCCGCTGAGAGATGCAGTGT
CGTTTGCGTTTGCTTGCGATGCGAACGAAGATGACCTCAATTTCTACTTT
GAAATGTGGGCGGAGTATGAAACAGTTGAAAGAATGAAGGAGCTGTTCCA
AGTGTTGAACAGCTTGATGCAGTTGGATATGGCACGTGCACTTTACAGAC
AGTTTCTGATGGCTGAACAGAGCAACCGAATGTCAAGCCTTTCGAACCTA
CGTACTTATATCCGCTTCCTGCTGAAATGGTTGAAAACATGTCTTTGA
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protein sequence of Gvermi7079.t1

>Gvermi7079.t1 ID=Gvermi7079.t1|Name=Gvermi7079.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=466bp
MHSYFAFVVHPQSGDVLTDDSYGLPSVVHGDITSDLHTLCSTVQNLIHNT
YRLILLRAECQVRECPTDQHRNPLFSMYLNQLLIFGIVSGDSNPVPRGFQ
WIPREKSSLIVTKPTDSPVAQFLQQYKKSGLLVNLDRLHPYSRPGWFEEV
ASWIRITAFRHNYCVNDIQQVSKTGYASVLRATCASDSSLYFKHVGPTVF
FDEIRTLLRLSEHMPDNFEKPIAVDTGRKWMLLRDQGSPFPVSAYSVKTN
RHLFQRALRKWATIQKQSIALTGKLIDSGVVRMDSENMQIAMHQLVSDSE
WCSLLASEIANAGNAAALNCVRANKLLIHETKRLWDKASSYNIPMALVHG
EMAPGNVVVNQKDEISFINFGSTCVSFPLRDAVSFAFACDANEDDLNFYF
EMWAEYETVERMKELFQVLNSLMQLDMARALYRQFLMAEQSNRMSSLSNL
RTYIRFLLKWLKTCL*
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mRNA from alignment at ScGOVlb_24229:1525655..1527052+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7079.t1 ID=Gvermi7079.t1|Name=Gvermi7079.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at ScGOVlb_24229:1525655..1527052+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACTCATATTTCGCGTTCGTCGTTCACCCTCAAAGTGGTGACGTTCT
CACCGACGACAGCTATGGCCTACCCTCCGTAGTTCATGGCGATATCACCT
CCGATCTGCATACGCTCTGCTCAACTGTGCAAAACCTTATCCACAATACC
TACCGCTTGATTCTTTTGCGAGCAGAGTGCCAAGTCCGAGAATGCCCCAC
TGACCAACACCGAAACCCTCTATTCTCCATGTATCTGAATCAACTACTGA
TATTCGGCATTGTATCAGGTGATTCGAATCCGGTCCCGAGAGGATTCCAG
TGGATTCCCCGCGAGAAATCGTCCCTTATAGTCACCAAGCCAACAGATTC
ACCTGTCGCCCAGTTCCTCCAGCAATACAAGAAATCGGGGCTGCTGGTCA
ACTTGGACCGCCTCCACCCTTACTCCCGCCCCGGATGGTTTGAAGAAGTC
GCGTCTTGGATCAGAATCACAGCGTTTCGGCATAATTACTGCGTCAACGA
TATCCAACAAGTCTCCAAAACAGGGTACGCCAGCGTTTTGCGCGCCACGT
GCGCAAGCGACTCTTCGCTTTATTTCAAACATGTCGGACCCACTGTTTTC
TTTGACGAGATTCGAACGCTGTTGCGTTTGTCCGAACACATGCCCGACAA
CTTCGAAAAGCCAATAGCAGTGGACACTGGCCGAAAATGGATGCTACTAC
GGGATCAAGGCTCGCCTTTTCCGGTGAGCGCATACTCTGTGAAGACGAAT
CGTCACCTCTTCCAAAGAGCGCTGCGAAAATGGGCGACGATTCAGAAGCA
GTCGATTGCCTTGACCGGCAAGCTTATTGATTCTGGCGTGGTTCGCATGG
ATTCGGAAAACATGCAGATTGCGATGCACCAGTTGGTGTCCGATTCTGAG
TGGTGCTCCTTGCTGGCTAGCGAAATTGCCAACGCGGGAAACGCCGCGGC
ATTGAACTGCGTCCGGGCTAACAAACTGCTCATCCACGAGACTAAAAGAT
TATGGGATAAAGCTTCGAGTTACAACATACCAATGGCGCTTGTTCATGGA
GAAATGGCTCCGGGAAATGTTGTGGTCAACCAGAAGGACGAGATCAGCTT
CATCAATTTTGGCTCCACATGCGTTTCTTTTCCGCTGAGAGATGCAGTGT
CGTTTGCGTTTGCTTGCGATGCGAACGAAGATGACCTCAATTTCTACTTT
GAAATGTGGGCGGAGTATGAAACAGTTGAAAGAATGAAGGAGCTGTTCCA
AGTGTTGAACAGCTTGATGCAGTTGGATATGGCACGTGCACTTTACAGAC
AGTTTCTGATGGCTGAACAGAGCAACCGAATGTCAAGCCTTTCGAACCTA
CGTACTTATATCCGCTTCCTGCTGAAATGGTTGAAAACATGTCTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1525655..1527052+

>Gvermi7079.t1 ID=Gvermi7079.t1|Name=Gvermi7079.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1398bp|location=Sequence derived from alignment at ScGOVlb_24229:1525655..1527052+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACTCATATTTCGCGTTCGTCGTTCACCCTCAAAGTGGTGACGTTCT
CACCGACGACAGCTATGGCCTACCCTCCGTAGTTCATGGCGATATCACCT
CCGATCTGCATACGCTCTGCTCAACTGTGCAAAACCTTATCCACAATACC
TACCGCTTGATTCTTTTGCGAGCAGAGTGCCAAGTCCGAGAATGCCCCAC
TGACCAACACCGAAACCCTCTATTCTCCATGTATCTGAATCAACTACTGA
TATTCGGCATTGTATCAGGTGATTCGAATCCGGTCCCGAGAGGATTCCAG
TGGATTCCCCGCGAGAAATCGTCCCTTATAGTCACCAAGCCAACAGATTC
ACCTGTCGCCCAGTTCCTCCAGCAATACAAGAAATCGGGGCTGCTGGTCA
ACTTGGACCGCCTCCACCCTTACTCCCGCCCCGGATGGTTTGAAGAAGTC
GCGTCTTGGATCAGAATCACAGCGTTTCGGCATAATTACTGCGTCAACGA
TATCCAACAAGTCTCCAAAACAGGGTACGCCAGCGTTTTGCGCGCCACGT
GCGCAAGCGACTCTTCGCTTTATTTCAAACATGTCGGACCCACTGTTTTC
TTTGACGAGATTCGAACGCTGTTGCGTTTGTCCGAACACATGCCCGACAA
CTTCGAAAAGCCAATAGCAGTGGACACTGGCCGAAAATGGATGCTACTAC
GGGATCAAGGCTCGCCTTTTCCGGTGAGCGCATACTCTGTGAAGACGAAT
CGTCACCTCTTCCAAAGAGCGCTGCGAAAATGGGCGACGATTCAGAAGCA
GTCGATTGCCTTGACCGGCAAGCTTATTGATTCTGGCGTGGTTCGCATGG
ATTCGGAAAACATGCAGATTGCGATGCACCAGTTGGTGTCCGATTCTGAG
TGGTGCTCCTTGCTGGCTAGCGAAATTGCCAACGCGGGAAACGCCGCGGC
ATTGAACTGCGTCCGGGCTAACAAACTGCTCATCCACGAGACTAAAAGAT
TATGGGATAAAGCTTCGAGTTACAACATACCAATGGCGCTTGTTCATGGA
GAAATGGCTCCGGGAAATGTTGTGGTCAACCAGAAGGACGAGATCAGCTT
CATCAATTTTGGCTCCACATGCGTTTCTTTTCCGCTGAGAGATGCAGTGT
CGTTTGCGTTTGCTTGCGATGCGAACGAAGATGACCTCAATTTCTACTTT
GAAATGTGGGCGGAGTATGAAACAGTTGAAAGAATGAAGGAGCTGTTCCA
AGTGTTGAACAGCTTGATGCAGTTGGATATGGCACGTGCACTTTACAGAC
AGTTTCTGATGGCTGAACAGAGCAACCGAATGTCAAGCCTTTCGAACCTA
CGTACTTATATCCGCTTCCTGCTGAAATGGTTGAAAACATGTCTTTGA
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