Gvermi7033.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7033.t1
Unique NameGvermi7033.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length689
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1041787..1043853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708674.1
Preferred nameMCM9
PFAMsMCM,MCM_OB
Max annot lvl2759|Eukaryota
KEGG koko:K10738
Evalue3.81e-183
EggNOG OGsCOG1241@1|root,KOG0477@2759|Eukaryota
EC3.6.4.12
Descriptionnegative regulation of DNA helicase activity
COG categoryL
BRITEko00000,ko01000,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7033Gvermi7033Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1041787..1043853 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7033.t1.stop1Gvermi7033.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1041787..1041789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7033.t1.CDS1Gvermi7033.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1041787..1043853 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7033.t1.exon1Gvermi7033.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1041787..1043853 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7033.t1.start1Gvermi7033.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1043851..1043853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7033.t1Gvermi7033.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1041787..1043853 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7033.t1 ID=Gvermi7033.t1|Name=Gvermi7033.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=689bp
MRRAPPRIRRMDTVSHGEHSVRPDHTKYFEEYIRQECLPRVSEIARAPDD
EAHYGLEVDLMSVGHFAPHVVTATLTDPYGTLPQVQAAIRAVQESVGGSK
KYVHARFCHLPATPDTVKRNVSALRNRDLHKLVSIIGTVTRTGSVMLREE
EREFLCTRCKHSFLVTGDITRSGAFDLPSRCPRPGDKPCYGNNFTAKPEI
APTCQEYQEIKVQEKVQHLDVGFIPRSLIVVLTNDIADTVKPGDDVVITG
VLHRRWNRNFSQGMRADVELMLVACHVASNNDHKSFLHVTEESRQLFAAH
WASRTPKKQLEARNVIIRSICPQIYGMYLLKLIVAMTLTGGVSYTDPSGA
RIRGESHLLIVGDPGTAKSQILRYAAKVSPRSVLTTGIGTSSAGLTVTAV
KEPGTGEWMLDAGALVLADGGICCIDEFDGIKQHDRGAIHEAMEQQTLSV
AKAGLVCTLDTRATVLAAVNPKGGRICTEIGVSEADDGEDDRDKLPITVG
IASPLLSRFDVVLTLLDQRNEDWDRELSSFILNGYNANTIVENEVWSTDR
LRQYFYFIKNNLKPRLSNQCQRILSTYYTLERGSSRRNAARTTVRLLEAL
VRLAQAHARLMFRETATPMDAVFAIAAVEASSATQEIVGGMSALHASFPS
DPKHEFDEYCRYLLNKLGLADEAIDFYYDDAPVDLSVE*
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spliced messenger RNA

>Gvermi7033.t1 ID=Gvermi7033.t1|Name=Gvermi7033.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2067bp|location=Sequence derived from alignment at ScGOVlb_24229:1041787..1043853- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGCGCTCCTCCTCGCATCCGGCGAATGGACACAGTCAGTCATGG
CGAGCACTCAGTCCGGCCAGACCACACCAAGTATTTCGAAGAGTATATCC
GTCAAGAGTGCCTCCCTCGTGTGTCTGAAATCGCGCGCGCTCCAGACGAT
GAAGCCCACTATGGTTTGGAGGTCGATCTCATGTCCGTGGGTCATTTTGC
TCCGCACGTCGTCACCGCTACTCTCACTGACCCTTACGGAACACTACCCC
AGGTGCAAGCCGCAATCCGAGCCGTTCAGGAATCAGTCGGCGGCTCAAAG
AAGTATGTGCATGCAAGATTTTGTCACCTGCCTGCCACCCCGGACACCGT
GAAGAGAAATGTTAGTGCTCTGCGAAACCGTGACCTCCACAAACTTGTCT
CTATCATTGGAACTGTTACAAGAACTGGAAGTGTCATGTTGCGCGAGGAG
GAACGCGAGTTTCTGTGCACCAGATGCAAACACTCCTTCTTGGTCACAGG
CGATATCACACGCAGCGGTGCATTTGACCTTCCCTCGAGATGTCCAAGAC
CGGGTGACAAGCCGTGCTATGGCAACAATTTCACCGCGAAACCAGAAATC
GCACCAACATGCCAGGAATATCAAGAAATCAAGGTGCAAGAAAAGGTTCA
GCATCTCGACGTCGGCTTTATACCTCGCTCTCTCATTGTTGTTCTTACAA
ATGACATTGCCGATACCGTAAAACCGGGCGATGATGTCGTTATTACTGGC
GTGTTGCATCGTCGATGGAACAGGAACTTTTCACAGGGTATGAGAGCCGA
TGTGGAACTCATGCTTGTGGCATGCCATGTGGCTTCCAATAACGATCACA
AGTCATTTCTTCACGTCACAGAGGAATCAAGGCAATTATTTGCGGCGCAT
TGGGCGTCGAGAACCCCGAAAAAGCAGTTGGAGGCTCGAAACGTCATCAT
TAGATCTATTTGTCCCCAAATATATGGTATGTATCTCCTAAAACTGATCG
TTGCCATGACTCTTACCGGTGGCGTTTCGTACACGGATCCATCGGGAGCT
CGCATTCGTGGTGAGTCCCACCTCTTGATCGTTGGAGATCCAGGCACAGC
CAAGTCGCAGATTCTCCGCTACGCTGCCAAGGTTTCCCCGCGATCGGTTC
TTACCACTGGAATAGGAACCTCCTCCGCCGGTCTCACAGTAACAGCCGTA
AAGGAACCTGGGACTGGGGAATGGATGTTAGACGCAGGTGCCTTAGTGCT
TGCTGATGGTGGTATTTGTTGTATTGATGAATTCGATGGTATAAAACAAC
ATGACCGTGGTGCTATTCATGAAGCAATGGAACAGCAAACCCTTTCTGTT
GCAAAAGCGGGTCTTGTTTGTACCTTAGATACTCGAGCTACTGTACTGGC
AGCAGTAAATCCAAAAGGCGGTAGGATATGTACAGAGATTGGAGTTTCCG
AAGCAGACGATGGTGAGGATGATCGGGACAAGCTGCCAATAACTGTTGGA
ATTGCATCGCCGCTGCTGAGTCGGTTTGATGTCGTGTTGACTCTCTTGGA
CCAGAGAAACGAGGACTGGGATAGAGAACTATCGAGCTTCATTCTGAATG
GGTACAACGCTAACACAATAGTGGAGAACGAAGTATGGTCCACAGACAGA
CTTCGTCAATACTTTTATTTTATCAAGAACAACTTGAAACCCCGGCTATC
CAATCAGTGCCAGCGAATTTTGTCTACATATTACACACTGGAAAGGGGAT
CCTCCCGGAGGAACGCTGCCAGAACAACTGTTCGCCTCTTAGAAGCTCTC
GTAAGGCTCGCGCAGGCTCACGCACGTCTTATGTTCAGGGAGACTGCTAC
GCCAATGGATGCAGTATTTGCCATTGCTGCTGTAGAAGCGTCATCCGCCA
CGCAAGAGATAGTAGGCGGCATGAGCGCACTTCACGCCTCGTTTCCTAGC
GATCCAAAACACGAATTTGACGAATATTGTCGGTATCTTTTGAATAAGTT
GGGTCTCGCAGACGAAGCAATAGATTTTTATTACGACGACGCCCCTGTGG
ATCTTTCAGTGGAATAG
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protein sequence of Gvermi7033.t1

>Gvermi7033.t1 ID=Gvermi7033.t1|Name=Gvermi7033.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=689bp
MRRAPPRIRRMDTVSHGEHSVRPDHTKYFEEYIRQECLPRVSEIARAPDD
EAHYGLEVDLMSVGHFAPHVVTATLTDPYGTLPQVQAAIRAVQESVGGSK
KYVHARFCHLPATPDTVKRNVSALRNRDLHKLVSIIGTVTRTGSVMLREE
EREFLCTRCKHSFLVTGDITRSGAFDLPSRCPRPGDKPCYGNNFTAKPEI
APTCQEYQEIKVQEKVQHLDVGFIPRSLIVVLTNDIADTVKPGDDVVITG
VLHRRWNRNFSQGMRADVELMLVACHVASNNDHKSFLHVTEESRQLFAAH
WASRTPKKQLEARNVIIRSICPQIYGMYLLKLIVAMTLTGGVSYTDPSGA
RIRGESHLLIVGDPGTAKSQILRYAAKVSPRSVLTTGIGTSSAGLTVTAV
KEPGTGEWMLDAGALVLADGGICCIDEFDGIKQHDRGAIHEAMEQQTLSV
AKAGLVCTLDTRATVLAAVNPKGGRICTEIGVSEADDGEDDRDKLPITVG
IASPLLSRFDVVLTLLDQRNEDWDRELSSFILNGYNANTIVENEVWSTDR
LRQYFYFIKNNLKPRLSNQCQRILSTYYTLERGSSRRNAARTTVRLLEAL
VRLAQAHARLMFRETATPMDAVFAIAAVEASSATQEIVGGMSALHASFPS
DPKHEFDEYCRYLLNKLGLADEAIDFYYDDAPVDLSVE*
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mRNA from alignment at ScGOVlb_24229:1041787..1043853-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7033.t1 ID=Gvermi7033.t1|Name=Gvermi7033.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2067bp|location=Sequence derived from alignment at ScGOVlb_24229:1041787..1043853- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCGCGCTCCTCCTCGCATCCGGCGAATGGACACAGTCAGTCATGG
CGAGCACTCAGTCCGGCCAGACCACACCAAGTATTTCGAAGAGTATATCC
GTCAAGAGTGCCTCCCTCGTGTGTCTGAAATCGCGCGCGCTCCAGACGAT
GAAGCCCACTATGGTTTGGAGGTCGATCTCATGTCCGTGGGTCATTTTGC
TCCGCACGTCGTCACCGCTACTCTCACTGACCCTTACGGAACACTACCCC
AGGTGCAAGCCGCAATCCGAGCCGTTCAGGAATCAGTCGGCGGCTCAAAG
AAGTATGTGCATGCAAGATTTTGTCACCTGCCTGCCACCCCGGACACCGT
GAAGAGAAATGTTAGTGCTCTGCGAAACCGTGACCTCCACAAACTTGTCT
CTATCATTGGAACTGTTACAAGAACTGGAAGTGTCATGTTGCGCGAGGAG
GAACGCGAGTTTCTGTGCACCAGATGCAAACACTCCTTCTTGGTCACAGG
CGATATCACACGCAGCGGTGCATTTGACCTTCCCTCGAGATGTCCAAGAC
CGGGTGACAAGCCGTGCTATGGCAACAATTTCACCGCGAAACCAGAAATC
GCACCAACATGCCAGGAATATCAAGAAATCAAGGTGCAAGAAAAGGTTCA
GCATCTCGACGTCGGCTTTATACCTCGCTCTCTCATTGTTGTTCTTACAA
ATGACATTGCCGATACCGTAAAACCGGGCGATGATGTCGTTATTACTGGC
GTGTTGCATCGTCGATGGAACAGGAACTTTTCACAGGGTATGAGAGCCGA
TGTGGAACTCATGCTTGTGGCATGCCATGTGGCTTCCAATAACGATCACA
AGTCATTTCTTCACGTCACAGAGGAATCAAGGCAATTATTTGCGGCGCAT
TGGGCGTCGAGAACCCCGAAAAAGCAGTTGGAGGCTCGAAACGTCATCAT
TAGATCTATTTGTCCCCAAATATATGGTATGTATCTCCTAAAACTGATCG
TTGCCATGACTCTTACCGGTGGCGTTTCGTACACGGATCCATCGGGAGCT
CGCATTCGTGGTGAGTCCCACCTCTTGATCGTTGGAGATCCAGGCACAGC
CAAGTCGCAGATTCTCCGCTACGCTGCCAAGGTTTCCCCGCGATCGGTTC
TTACCACTGGAATAGGAACCTCCTCCGCCGGTCTCACAGTAACAGCCGTA
AAGGAACCTGGGACTGGGGAATGGATGTTAGACGCAGGTGCCTTAGTGCT
TGCTGATGGTGGTATTTGTTGTATTGATGAATTCGATGGTATAAAACAAC
ATGACCGTGGTGCTATTCATGAAGCAATGGAACAGCAAACCCTTTCTGTT
GCAAAAGCGGGTCTTGTTTGTACCTTAGATACTCGAGCTACTGTACTGGC
AGCAGTAAATCCAAAAGGCGGTAGGATATGTACAGAGATTGGAGTTTCCG
AAGCAGACGATGGTGAGGATGATCGGGACAAGCTGCCAATAACTGTTGGA
ATTGCATCGCCGCTGCTGAGTCGGTTTGATGTCGTGTTGACTCTCTTGGA
CCAGAGAAACGAGGACTGGGATAGAGAACTATCGAGCTTCATTCTGAATG
GGTACAACGCTAACACAATAGTGGAGAACGAAGTATGGTCCACAGACAGA
CTTCGTCAATACTTTTATTTTATCAAGAACAACTTGAAACCCCGGCTATC
CAATCAGTGCCAGCGAATTTTGTCTACATATTACACACTGGAAAGGGGAT
CCTCCCGGAGGAACGCTGCCAGAACAACTGTTCGCCTCTTAGAAGCTCTC
GTAAGGCTCGCGCAGGCTCACGCACGTCTTATGTTCAGGGAGACTGCTAC
GCCAATGGATGCAGTATTTGCCATTGCTGCTGTAGAAGCGTCATCCGCCA
CGCAAGAGATAGTAGGCGGCATGAGCGCACTTCACGCCTCGTTTCCTAGC
GATCCAAAACACGAATTTGACGAATATTGTCGGTATCTTTTGAATAAGTT
GGGTCTCGCAGACGAAGCAATAGATTTTTATTACGACGACGCCCCTGTGG
ATCTTTCAGTGGAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1041787..1043853-

>Gvermi7033.t1 ID=Gvermi7033.t1|Name=Gvermi7033.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2067bp|location=Sequence derived from alignment at ScGOVlb_24229:1041787..1043853- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCGCGCTCCTCCTCGCATCCGGCGAATGGACACAGTCAGTCATGG
CGAGCACTCAGTCCGGCCAGACCACACCAAGTATTTCGAAGAGTATATCC
GTCAAGAGTGCCTCCCTCGTGTGTCTGAAATCGCGCGCGCTCCAGACGAT
GAAGCCCACTATGGTTTGGAGGTCGATCTCATGTCCGTGGGTCATTTTGC
TCCGCACGTCGTCACCGCTACTCTCACTGACCCTTACGGAACACTACCCC
AGGTGCAAGCCGCAATCCGAGCCGTTCAGGAATCAGTCGGCGGCTCAAAG
AAGTATGTGCATGCAAGATTTTGTCACCTGCCTGCCACCCCGGACACCGT
GAAGAGAAATGTTAGTGCTCTGCGAAACCGTGACCTCCACAAACTTGTCT
CTATCATTGGAACTGTTACAAGAACTGGAAGTGTCATGTTGCGCGAGGAG
GAACGCGAGTTTCTGTGCACCAGATGCAAACACTCCTTCTTGGTCACAGG
CGATATCACACGCAGCGGTGCATTTGACCTTCCCTCGAGATGTCCAAGAC
CGGGTGACAAGCCGTGCTATGGCAACAATTTCACCGCGAAACCAGAAATC
GCACCAACATGCCAGGAATATCAAGAAATCAAGGTGCAAGAAAAGGTTCA
GCATCTCGACGTCGGCTTTATACCTCGCTCTCTCATTGTTGTTCTTACAA
ATGACATTGCCGATACCGTAAAACCGGGCGATGATGTCGTTATTACTGGC
GTGTTGCATCGTCGATGGAACAGGAACTTTTCACAGGGTATGAGAGCCGA
TGTGGAACTCATGCTTGTGGCATGCCATGTGGCTTCCAATAACGATCACA
AGTCATTTCTTCACGTCACAGAGGAATCAAGGCAATTATTTGCGGCGCAT
TGGGCGTCGAGAACCCCGAAAAAGCAGTTGGAGGCTCGAAACGTCATCAT
TAGATCTATTTGTCCCCAAATATATGGTATGTATCTCCTAAAACTGATCG
TTGCCATGACTCTTACCGGTGGCGTTTCGTACACGGATCCATCGGGAGCT
CGCATTCGTGGTGAGTCCCACCTCTTGATCGTTGGAGATCCAGGCACAGC
CAAGTCGCAGATTCTCCGCTACGCTGCCAAGGTTTCCCCGCGATCGGTTC
TTACCACTGGAATAGGAACCTCCTCCGCCGGTCTCACAGTAACAGCCGTA
AAGGAACCTGGGACTGGGGAATGGATGTTAGACGCAGGTGCCTTAGTGCT
TGCTGATGGTGGTATTTGTTGTATTGATGAATTCGATGGTATAAAACAAC
ATGACCGTGGTGCTATTCATGAAGCAATGGAACAGCAAACCCTTTCTGTT
GCAAAAGCGGGTCTTGTTTGTACCTTAGATACTCGAGCTACTGTACTGGC
AGCAGTAAATCCAAAAGGCGGTAGGATATGTACAGAGATTGGAGTTTCCG
AAGCAGACGATGGTGAGGATGATCGGGACAAGCTGCCAATAACTGTTGGA
ATTGCATCGCCGCTGCTGAGTCGGTTTGATGTCGTGTTGACTCTCTTGGA
CCAGAGAAACGAGGACTGGGATAGAGAACTATCGAGCTTCATTCTGAATG
GGTACAACGCTAACACAATAGTGGAGAACGAAGTATGGTCCACAGACAGA
CTTCGTCAATACTTTTATTTTATCAAGAACAACTTGAAACCCCGGCTATC
CAATCAGTGCCAGCGAATTTTGTCTACATATTACACACTGGAAAGGGGAT
CCTCCCGGAGGAACGCTGCCAGAACAACTGTTCGCCTCTTAGAAGCTCTC
GTAAGGCTCGCGCAGGCTCACGCACGTCTTATGTTCAGGGAGACTGCTAC
GCCAATGGATGCAGTATTTGCCATTGCTGCTGTAGAAGCGTCATCCGCCA
CGCAAGAGATAGTAGGCGGCATGAGCGCACTTCACGCCTCGTTTCCTAGC
GATCCAAAACACGAATTTGACGAATATTGTCGGTATCTTTTGAATAAGTT
GGGTCTCGCAGACGAAGCAATAGATTTTTATTACGACGACGCCCCTGTGG
ATCTTTCAGTGGAATAG
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