Gvermi5379.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5379.t1
Unique NameGvermi5379.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length167
Homology
BLAST of Gvermi5379.t1 vs. uniprot
Match: A0A2V3IW95_9FLOR (Endoplasmic reticulum transmembrane protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW95_9FLOR)

HSP 1 Score: 182 bits (462), Expect = 5.770e-56
Identity = 109/169 (64.50%), Postives = 134/169 (79.29%), Query Frame = 0
Query:    1 MASVVWLSVFFLLMIEIVITFILVLPFPRFMRKFIARKIFTYDLGKRVRFVSNFIILGLILAVSDAIQTLRHLEQKEATDTTNSSANDAR--VGY-ITVSFDKQRKFRAERNEVVKVEEEKEDVEQRLKDVNEVASATTSIPNSDISRKEEESTLRKRANVTANTDKND 166
            MA++VW++VFFLLMIE+VIT +LVLP PR +RKFIARKIF YDLG+R+RFVSNFIILGLILAVSDA+QTLRHLEQKE T+ ++S+ NDA    G+ +T+ F   R       EVV VEE+KE VEQRLKDV E+AS TTS+P +DI+ KEE +TLRKR    +N DK+D
Sbjct:    1 MATIVWMAVFFLLMIELVITALLVLPLPRVLRKFIARKIFNYDLGRRIRFVSNFIILGLILAVSDAVQTLRHLEQKEGTEASSSAYNDALYLAGFALTLMFVIARIVEL-MQEVVNVEEQKEVVEQRLKDVGEIASTTTSVPATDITSKEESTTLRKRTPAASNADKHD 168          
BLAST of Gvermi5379.t1 vs. uniprot
Match: A0A1X6PCL7_PORUM (Bap31 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PCL7_PORUM)

HSP 1 Score: 81.6 bits (200), Expect = 3.330e-16
Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 0
Query:    3 SVVWLSVFFLLMIEIVITFILVLPFPRFMRKFIARKIFTYDLGKRVRFVSNFIILGLILAVSDAIQTLRHLEQK------EATDTTNSSANDARVGYITVSFDKQRKFRAERN 109
            SVVW+SVF LL +E++ T +LV+P PR +RK IA  IF ++L +RV+F   F +L  + A+ D +Q L  L +K      E     N    D++  +   S D+QR+FRAERN
Sbjct:    2 SVVWVSVFILLCLELIATAVLVMPLPRLVRKSIASLIFRFELAQRVKFFIRFTVLASLFAIWDCVQELTRLREKYEAGSLEKKTGVNMDGGDSQASFYQASLDRQRRFRAERN 114          
BLAST of Gvermi5379.t1 vs. uniprot
Match: A0A1X6PLH0_PORUM (Endoplasmic reticulum transmembrane protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PLH0_PORUM)

HSP 1 Score: 75.1 bits (183), Expect = 1.140e-13
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 0
Query:    3 SVVWLSVFFLLMIEIVITFILVLPFPRFMRKFIARKIFTYDLGKRVRFVSNFIILGLILAVSDAIQTLRHLEQKEATDTTNSSA-----NDARVGYITVSFDKQRKFRAERN 109
            SVVWL+VF  L +E+V T ILV P P  +R  IAR I+ Y LG ++ F   F  L L+ AV D++Q L+ LE+K A      +      +     +   SFD+QRKFRAERN
Sbjct:    2 SVVWLAVFAALCVELVFTAILVAPLPIVIRNGIARFIYRYKLGDKLSFFLRFATLALMFAVWDSVQDLQRLEKKYAASDAKENGPVDPVSGGNTSFQQTSFDRQRKFRAERN 113          
BLAST of Gvermi5379.t1 vs. uniprot
Match: A0A7S1YKC2_9STRA (Endoplasmic reticulum transmembrane protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YKC2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.840e-11
Identity = 42/111 (37.84%), Postives = 68/111 (61.26%), Query Frame = 0
Query:    1 MASVVWLSVFFLLMIEIVITFILVLPFPRFMRKFIARKIFTYDLGKRVRFVSNFIILGLILAVSDAIQTLRHLEQKEATDTTNSSANDA--RVGYITVSFDKQRKFRAERN 109
            M S++W  VF  L+IE++IT ILV+P PR +R FIAR++   +LG R+ +VS +I + L++A+ D I+T + LEQ+       S       R   +    DK+R ++++RN
Sbjct:   37 MKSLIWTGVFVFLVIELIITIILVIPVPRKIRNFIARRVNKLNLGHRISYVSFYIAIALVIALVDTIRTAQMLEQRAMNHAAPSDMVQVNMRDEMMWTEHDKKRIYKSQRN 147          
BLAST of Gvermi5379.t1 vs. uniprot
Match: A0A7S1D075_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D075_CYCTE)

HSP 1 Score: 56.2 bits (134), Expect = 2.500e-7
Identity = 32/80 (40.00%), Postives = 54/80 (67.50%), Query Frame = 0
Query:    1 MASVVWLSVFFLLMIEIVITFILVLPFPRFMRKFIARKIFTYDLGKRVRFVSNFIILGLILAVSDAIQTLRHLEQKEATD 80
            M++++W SV+ LLM E+ +T +LV+P  R  R +IARKI  + LG R+     FI++GL+LA+ ++I +L ++E +   D
Sbjct:   23 MSTLIWSSVWLLLMAELAVTTVLVIPVGRKTRNYIARKIKRFHLGDRIGKHGYFILVGLLLALMESIHSLHNIETRMLHD 102          
BLAST of Gvermi5379.t1 vs. uniprot
Match: A0A7S2ZW46_9RHOD (Endoplasmic reticulum transmembrane protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZW46_9RHOD)

HSP 1 Score: 54.7 bits (130), Expect = 5.000e-6
Identity = 36/109 (33.03%), Postives = 66/109 (60.55%), Query Frame = 0
Query:    1 MASVVWLSVFFLLMIEIVITFILVLPFPRFMRKFIARKIFTYDLGKRVRFVSNFIILGLILAVSDAIQTLRHLEQKEATDTTNSSANDARVGYITVSFDKQRKFRAERN 109
            MASV+W+SVF LL +E+V+    +LP P  + + I++ +    +   + F+  F+++GL + V D+IQ+++ L+++ +    N   +      +++S  KQR FRAERN
Sbjct:    1 MASVIWMSVFCLLCVEVVLCLFSMLPLPHTVWRSISKVLRMSAVESSLTFIVRFLVVGLAIGVFDSIQSIQGLQEQISVTDPNDLYSA-----MSLSSRKQRIFRAERN 104          
The following BLAST results are available for this feature:
BLAST of Gvermi5379.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IW95_9FLOR5.770e-5664.50Endoplasmic reticulum transmembrane protein n=1 Ta... [more]
A0A1X6PCL7_PORUM3.330e-1641.59Bap31 domain-containing protein n=1 Tax=Porphyra u... [more]
A0A1X6PLH0_PORUM1.140e-1343.75Endoplasmic reticulum transmembrane protein n=1 Ta... [more]
A0A7S1YKC2_9STRA3.840e-1137.84Endoplasmic reticulum transmembrane protein n=1 Ta... [more]
A0A7S1D075_CYCTE2.500e-740.00Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S2ZW46_9RHOD5.000e-633.03Endoplasmic reticulum transmembrane protein n=4 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 104..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..166
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..47
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..67
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 68..166
NoneNo IPR availableTMHMMTMhelixcoord: 48..70
NoneNo IPR availableTMHMMTMhelixcoord: 5..27
IPR040463BAP29/BAP31, transmembrane domainPFAMPF05529Bap31coord: 3..109
e-value: 4.2E-14
score: 52.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:1488289..1489109 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5379.t1Gvermi5379.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 1488289..1489109 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5379.t1 ID=Gvermi5379.t1|Name=Gvermi5379.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=167bp
MASVVWLSVFFLLMIEIVITFILVLPFPRFMRKFIARKIFTYDLGKRVRF
VSNFIILGLILAVSDAIQTLRHLEQKEATDTTNSSANDARVGYITVSFDK
QRKFRAERNEVVKVEEEKEDVEQRLKDVNEVASATTSIPNSDISRKEEES
TLRKRANVTANTDKND*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040463BAP29/BAP31_N