Gvermi5138.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5138.t1
Unique NameGvermi5138.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length772
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:363390..365705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5138Gvermi5138Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 363390..365705 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5138.t1.stop1Gvermi5138.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 363390..363392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5138.t1.CDS1Gvermi5138.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 363390..365705 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5138.t1.exon1Gvermi5138.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 363390..365705 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5138.t1.start1Gvermi5138.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 365703..365705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5138.t1Gvermi5138.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 363390..365705 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5138.t1 ID=Gvermi5138.t1|Name=Gvermi5138.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=772bp
MSSASPVAAPPRQPPDPAAPDACDGPPSFAPSIPQHLPDHQPTVRYVRGV
VADARHTLRTAADRAAFLAAVLGDGSLAQLALDDAPLLLQLQTRAAVVVR
EVAARVAAAAAAHHLDVDALVAVLAVLAVEWPLLLDVMEREAVTTLVLDV
LNRSSSRPSLVARCLTALRAFTVTDPMRRRVMFDGTVPLTLQLMQRHAHS
PRVQERAIALMANISFGCAHRKRVITRQGAIKAILHAMNTFPTDHNIQLR
SALAIRNLTHQTQVNQYIAGNEGAVEAIASAMLRFRGNTVNPELRFQCIM
ALESLCHEHQRNRQRLIDVDAAPLSFPNTLCTSSSAELLKRCDDDQHEIV
DEHGDVVVEEEQPLVSDVTPHFSLGAALCPGKVVSNLVASPSVSSCGYSD
RAPTSPVSNRDQSPEKLKMQLEHAEQPSINKPSIIRAIIHAMRRDPDDAL
LLETSLTVLTLIALHNVQVQHRIGQFGGIQVAVAAIKRHPKHAAVATKSC
ALIRCLCLQEANRRLVTSGLPVLISALNEHRNVPDVVREVAAALSNAVFE
SEKNSAWVVNKGGIKAIILAMNDCGAKDVMVLDAGICAMRNFVDSSYSGA
LSAVNDGAVQAAVNALDRTKSASTKGECIVQEQAVLFLVDVASLAPQSKK
YMRDADASDWIENALAKLSAERYAELHSVADSLLTELSEQAEDVYEKTRN
AGSSQRTSAKPTGRSPRGLFGGFLLPRRAATSADTRKVFGGRSMPLGSGR
NDVPRKGKRLSTRFRFGTALS*
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spliced messenger RNA

>Gvermi5138.t1 ID=Gvermi5138.t1|Name=Gvermi5138.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2316bp|location=Sequence derived from alignment at ScGOVlb_24228:363390..365705- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCGCGTCGCCCGTCGCCGCGCCGCCGCGCCAACCCCCCGACCC
CGCCGCCCCCGACGCGTGCGACGGGCCGCCGTCCTTCGCCCCCTCCATCC
CCCAACACCTGCCCGACCACCAACCCACCGTGCGCTACGTGCGCGGCGTC
GTCGCCGACGCCCGCCACACCCTGCGCACCGCCGCCGACAGGGCCGCCTT
CCTCGCCGCCGTCCTGGGCGATGGCTCCCTCGCACAGCTCGCGCTCGACG
ACGCCCCGTTGCTGCTGCAGCTGCAGACGCGCGCCGCCGTCGTCGTGCGC
GAGGTCGCCGCCCGCGTCGCCGCCGCCGCCGCCGCCCACCACCTCGACGT
CGACGCCCTCGTCGCCGTGCTGGCCGTGCTGGCCGTCGAGTGGCCGTTGC
TGCTCGACGTCATGGAGAGGGAGGCCGTCACCACCCTCGTCCTCGACGTC
CTCAATCGCTCCTCCTCGCGCCCCTCCCTCGTTGCCCGCTGCCTCACCGC
GCTGCGCGCCTTCACCGTCACCGACCCCATGCGCCGCCGCGTCATGTTTG
ACGGCACGGTTCCGCTCACGCTGCAGCTCATGCAGCGCCATGCGCACAGC
CCGCGCGTTCAGGAGCGAGCCATCGCCCTCATGGCAAACATCTCCTTCGG
CTGCGCCCACAGGAAGCGCGTCATCACCAGGCAGGGCGCCATTAAGGCCA
TCCTGCACGCCATGAACACCTTTCCCACCGACCACAACATTCAGTTGCGA
TCCGCGCTCGCCATCCGAAACCTCACCCATCAGACGCAGGTCAACCAGTA
CATTGCGGGCAACGAAGGCGCCGTGGAGGCCATTGCCTCCGCCATGCTTC
GTTTCCGCGGAAACACAGTCAACCCCGAGCTCAGGTTCCAGTGCATAATG
GCCTTGGAGAGCCTGTGTCACGAGCATCAGCGAAACCGCCAGCGACTCAT
CGACGTGGATGCCGCCCCTCTGTCGTTTCCAAACACCCTTTGCACATCTT
CGAGTGCCGAGCTGTTGAAGCGCTGCGACGACGACCAGCATGAAATTGTG
GATGAGCACGGCGATGTTGTCGTTGAGGAAGAGCAGCCGCTCGTGTCGGA
CGTCACCCCGCATTTCAGTCTGGGCGCTGCCTTGTGTCCGGGTAAGGTCG
TTTCAAACCTTGTGGCGTCGCCCTCCGTTTCAAGCTGCGGCTATTCGGAC
CGCGCCCCCACGTCGCCCGTGTCCAACAGGGATCAGTCGCCGGAAAAGCT
CAAAATGCAGCTGGAGCACGCCGAACAGCCTTCCATCAACAAGCCGTCCA
TCATTCGAGCCATCATTCACGCCATGAGAAGAGATCCCGACGACGCGTTG
CTTTTGGAGACGTCGCTCACGGTTCTCACTCTGATTGCGCTGCACAACGT
GCAGGTGCAGCACAGAATTGGCCAGTTCGGCGGCATACAGGTCGCCGTGG
CCGCCATCAAACGACACCCCAAGCACGCGGCTGTTGCGACAAAGTCTTGC
GCGCTCATTCGCTGCCTGTGTCTGCAGGAAGCAAACCGGAGGCTGGTCAC
GTCGGGGCTGCCCGTGCTCATCTCTGCGCTGAACGAGCACCGGAACGTGC
CAGATGTGGTGCGCGAAGTTGCGGCAGCGCTCAGTAACGCCGTTTTTGAA
AGCGAGAAGAACAGTGCTTGGGTTGTCAACAAGGGCGGTATCAAGGCCAT
CATCCTCGCCATGAATGATTGTGGCGCAAAGGATGTGATGGTTCTGGATG
CTGGAATATGTGCCATGCGCAATTTTGTGGACTCCAGTTACAGCGGGGCG
TTGTCGGCTGTGAACGACGGCGCTGTGCAAGCTGCGGTGAATGCGCTGGA
CAGGACCAAAAGTGCTTCTACAAAAGGCGAATGCATTGTGCAGGAGCAAG
CGGTGCTGTTTTTGGTCGATGTGGCGTCACTGGCACCTCAATCCAAGAAA
TACATGCGTGATGCAGATGCTTCCGATTGGATTGAAAACGCGCTAGCAAA
GCTTTCGGCTGAAAGGTACGCCGAGTTGCACTCGGTGGCAGATTCTTTAC
TGACAGAGCTCTCTGAGCAAGCTGAAGACGTGTATGAGAAGACGCGCAAT
GCTGGTTCTAGCCAACGAACGAGTGCTAAACCTACGGGAAGATCGCCACG
GGGCTTATTTGGCGGCTTTCTTTTGCCGAGACGAGCTGCGACATCAGCAG
ATACGCGGAAGGTGTTTGGGGGGCGGAGCATGCCGCTGGGAAGCGGAAGA
AATGACGTTCCGCGGAAGGGCAAGCGCCTGTCAACGAGGTTCCGCTTCGG
AACTGCTCTCTCTTGA
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protein sequence of Gvermi5138.t1

>Gvermi5138.t1 ID=Gvermi5138.t1|Name=Gvermi5138.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=772bp
MSSASPVAAPPRQPPDPAAPDACDGPPSFAPSIPQHLPDHQPTVRYVRGV
VADARHTLRTAADRAAFLAAVLGDGSLAQLALDDAPLLLQLQTRAAVVVR
EVAARVAAAAAAHHLDVDALVAVLAVLAVEWPLLLDVMEREAVTTLVLDV
LNRSSSRPSLVARCLTALRAFTVTDPMRRRVMFDGTVPLTLQLMQRHAHS
PRVQERAIALMANISFGCAHRKRVITRQGAIKAILHAMNTFPTDHNIQLR
SALAIRNLTHQTQVNQYIAGNEGAVEAIASAMLRFRGNTVNPELRFQCIM
ALESLCHEHQRNRQRLIDVDAAPLSFPNTLCTSSSAELLKRCDDDQHEIV
DEHGDVVVEEEQPLVSDVTPHFSLGAALCPGKVVSNLVASPSVSSCGYSD
RAPTSPVSNRDQSPEKLKMQLEHAEQPSINKPSIIRAIIHAMRRDPDDAL
LLETSLTVLTLIALHNVQVQHRIGQFGGIQVAVAAIKRHPKHAAVATKSC
ALIRCLCLQEANRRLVTSGLPVLISALNEHRNVPDVVREVAAALSNAVFE
SEKNSAWVVNKGGIKAIILAMNDCGAKDVMVLDAGICAMRNFVDSSYSGA
LSAVNDGAVQAAVNALDRTKSASTKGECIVQEQAVLFLVDVASLAPQSKK
YMRDADASDWIENALAKLSAERYAELHSVADSLLTELSEQAEDVYEKTRN
AGSSQRTSAKPTGRSPRGLFGGFLLPRRAATSADTRKVFGGRSMPLGSGR
NDVPRKGKRLSTRFRFGTALS*
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mRNA from alignment at ScGOVlb_24228:363390..365705-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5138.t1 ID=Gvermi5138.t1|Name=Gvermi5138.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2316bp|location=Sequence derived from alignment at ScGOVlb_24228:363390..365705- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTCCGCGTCGCCCGTCGCCGCGCCGCCGCGCCAACCCCCCGACCC
CGCCGCCCCCGACGCGTGCGACGGGCCGCCGTCCTTCGCCCCCTCCATCC
CCCAACACCTGCCCGACCACCAACCCACCGTGCGCTACGTGCGCGGCGTC
GTCGCCGACGCCCGCCACACCCTGCGCACCGCCGCCGACAGGGCCGCCTT
CCTCGCCGCCGTCCTGGGCGATGGCTCCCTCGCACAGCTCGCGCTCGACG
ACGCCCCGTTGCTGCTGCAGCTGCAGACGCGCGCCGCCGTCGTCGTGCGC
GAGGTCGCCGCCCGCGTCGCCGCCGCCGCCGCCGCCCACCACCTCGACGT
CGACGCCCTCGTCGCCGTGCTGGCCGTGCTGGCCGTCGAGTGGCCGTTGC
TGCTCGACGTCATGGAGAGGGAGGCCGTCACCACCCTCGTCCTCGACGTC
CTCAATCGCTCCTCCTCGCGCCCCTCCCTCGTTGCCCGCTGCCTCACCGC
GCTGCGCGCCTTCACCGTCACCGACCCCATGCGCCGCCGCGTCATGTTTG
ACGGCACGGTTCCGCTCACGCTGCAGCTCATGCAGCGCCATGCGCACAGC
CCGCGCGTTCAGGAGCGAGCCATCGCCCTCATGGCAAACATCTCCTTCGG
CTGCGCCCACAGGAAGCGCGTCATCACCAGGCAGGGCGCCATTAAGGCCA
TCCTGCACGCCATGAACACCTTTCCCACCGACCACAACATTCAGTTGCGA
TCCGCGCTCGCCATCCGAAACCTCACCCATCAGACGCAGGTCAACCAGTA
CATTGCGGGCAACGAAGGCGCCGTGGAGGCCATTGCCTCCGCCATGCTTC
GTTTCCGCGGAAACACAGTCAACCCCGAGCTCAGGTTCCAGTGCATAATG
GCCTTGGAGAGCCTGTGTCACGAGCATCAGCGAAACCGCCAGCGACTCAT
CGACGTGGATGCCGCCCCTCTGTCGTTTCCAAACACCCTTTGCACATCTT
CGAGTGCCGAGCTGTTGAAGCGCTGCGACGACGACCAGCATGAAATTGTG
GATGAGCACGGCGATGTTGTCGTTGAGGAAGAGCAGCCGCTCGTGTCGGA
CGTCACCCCGCATTTCAGTCTGGGCGCTGCCTTGTGTCCGGGTAAGGTCG
TTTCAAACCTTGTGGCGTCGCCCTCCGTTTCAAGCTGCGGCTATTCGGAC
CGCGCCCCCACGTCGCCCGTGTCCAACAGGGATCAGTCGCCGGAAAAGCT
CAAAATGCAGCTGGAGCACGCCGAACAGCCTTCCATCAACAAGCCGTCCA
TCATTCGAGCCATCATTCACGCCATGAGAAGAGATCCCGACGACGCGTTG
CTTTTGGAGACGTCGCTCACGGTTCTCACTCTGATTGCGCTGCACAACGT
GCAGGTGCAGCACAGAATTGGCCAGTTCGGCGGCATACAGGTCGCCGTGG
CCGCCATCAAACGACACCCCAAGCACGCGGCTGTTGCGACAAAGTCTTGC
GCGCTCATTCGCTGCCTGTGTCTGCAGGAAGCAAACCGGAGGCTGGTCAC
GTCGGGGCTGCCCGTGCTCATCTCTGCGCTGAACGAGCACCGGAACGTGC
CAGATGTGGTGCGCGAAGTTGCGGCAGCGCTCAGTAACGCCGTTTTTGAA
AGCGAGAAGAACAGTGCTTGGGTTGTCAACAAGGGCGGTATCAAGGCCAT
CATCCTCGCCATGAATGATTGTGGCGCAAAGGATGTGATGGTTCTGGATG
CTGGAATATGTGCCATGCGCAATTTTGTGGACTCCAGTTACAGCGGGGCG
TTGTCGGCTGTGAACGACGGCGCTGTGCAAGCTGCGGTGAATGCGCTGGA
CAGGACCAAAAGTGCTTCTACAAAAGGCGAATGCATTGTGCAGGAGCAAG
CGGTGCTGTTTTTGGTCGATGTGGCGTCACTGGCACCTCAATCCAAGAAA
TACATGCGTGATGCAGATGCTTCCGATTGGATTGAAAACGCGCTAGCAAA
GCTTTCGGCTGAAAGGTACGCCGAGTTGCACTCGGTGGCAGATTCTTTAC
TGACAGAGCTCTCTGAGCAAGCTGAAGACGTGTATGAGAAGACGCGCAAT
GCTGGTTCTAGCCAACGAACGAGTGCTAAACCTACGGGAAGATCGCCACG
GGGCTTATTTGGCGGCTTTCTTTTGCCGAGACGAGCTGCGACATCAGCAG
ATACGCGGAAGGTGTTTGGGGGGCGGAGCATGCCGCTGGGAAGCGGAAGA
AATGACGTTCCGCGGAAGGGCAAGCGCCTGTCAACGAGGTTCCGCTTCGG
AACTGCTCTCTCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24228:363390..365705-

>Gvermi5138.t1 ID=Gvermi5138.t1|Name=Gvermi5138.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2316bp|location=Sequence derived from alignment at ScGOVlb_24228:363390..365705- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTCCGCGTCGCCCGTCGCCGCGCCGCCGCGCCAACCCCCCGACCC
CGCCGCCCCCGACGCGTGCGACGGGCCGCCGTCCTTCGCCCCCTCCATCC
CCCAACACCTGCCCGACCACCAACCCACCGTGCGCTACGTGCGCGGCGTC
GTCGCCGACGCCCGCCACACCCTGCGCACCGCCGCCGACAGGGCCGCCTT
CCTCGCCGCCGTCCTGGGCGATGGCTCCCTCGCACAGCTCGCGCTCGACG
ACGCCCCGTTGCTGCTGCAGCTGCAGACGCGCGCCGCCGTCGTCGTGCGC
GAGGTCGCCGCCCGCGTCGCCGCCGCCGCCGCCGCCCACCACCTCGACGT
CGACGCCCTCGTCGCCGTGCTGGCCGTGCTGGCCGTCGAGTGGCCGTTGC
TGCTCGACGTCATGGAGAGGGAGGCCGTCACCACCCTCGTCCTCGACGTC
CTCAATCGCTCCTCCTCGCGCCCCTCCCTCGTTGCCCGCTGCCTCACCGC
GCTGCGCGCCTTCACCGTCACCGACCCCATGCGCCGCCGCGTCATGTTTG
ACGGCACGGTTCCGCTCACGCTGCAGCTCATGCAGCGCCATGCGCACAGC
CCGCGCGTTCAGGAGCGAGCCATCGCCCTCATGGCAAACATCTCCTTCGG
CTGCGCCCACAGGAAGCGCGTCATCACCAGGCAGGGCGCCATTAAGGCCA
TCCTGCACGCCATGAACACCTTTCCCACCGACCACAACATTCAGTTGCGA
TCCGCGCTCGCCATCCGAAACCTCACCCATCAGACGCAGGTCAACCAGTA
CATTGCGGGCAACGAAGGCGCCGTGGAGGCCATTGCCTCCGCCATGCTTC
GTTTCCGCGGAAACACAGTCAACCCCGAGCTCAGGTTCCAGTGCATAATG
GCCTTGGAGAGCCTGTGTCACGAGCATCAGCGAAACCGCCAGCGACTCAT
CGACGTGGATGCCGCCCCTCTGTCGTTTCCAAACACCCTTTGCACATCTT
CGAGTGCCGAGCTGTTGAAGCGCTGCGACGACGACCAGCATGAAATTGTG
GATGAGCACGGCGATGTTGTCGTTGAGGAAGAGCAGCCGCTCGTGTCGGA
CGTCACCCCGCATTTCAGTCTGGGCGCTGCCTTGTGTCCGGGTAAGGTCG
TTTCAAACCTTGTGGCGTCGCCCTCCGTTTCAAGCTGCGGCTATTCGGAC
CGCGCCCCCACGTCGCCCGTGTCCAACAGGGATCAGTCGCCGGAAAAGCT
CAAAATGCAGCTGGAGCACGCCGAACAGCCTTCCATCAACAAGCCGTCCA
TCATTCGAGCCATCATTCACGCCATGAGAAGAGATCCCGACGACGCGTTG
CTTTTGGAGACGTCGCTCACGGTTCTCACTCTGATTGCGCTGCACAACGT
GCAGGTGCAGCACAGAATTGGCCAGTTCGGCGGCATACAGGTCGCCGTGG
CCGCCATCAAACGACACCCCAAGCACGCGGCTGTTGCGACAAAGTCTTGC
GCGCTCATTCGCTGCCTGTGTCTGCAGGAAGCAAACCGGAGGCTGGTCAC
GTCGGGGCTGCCCGTGCTCATCTCTGCGCTGAACGAGCACCGGAACGTGC
CAGATGTGGTGCGCGAAGTTGCGGCAGCGCTCAGTAACGCCGTTTTTGAA
AGCGAGAAGAACAGTGCTTGGGTTGTCAACAAGGGCGGTATCAAGGCCAT
CATCCTCGCCATGAATGATTGTGGCGCAAAGGATGTGATGGTTCTGGATG
CTGGAATATGTGCCATGCGCAATTTTGTGGACTCCAGTTACAGCGGGGCG
TTGTCGGCTGTGAACGACGGCGCTGTGCAAGCTGCGGTGAATGCGCTGGA
CAGGACCAAAAGTGCTTCTACAAAAGGCGAATGCATTGTGCAGGAGCAAG
CGGTGCTGTTTTTGGTCGATGTGGCGTCACTGGCACCTCAATCCAAGAAA
TACATGCGTGATGCAGATGCTTCCGATTGGATTGAAAACGCGCTAGCAAA
GCTTTCGGCTGAAAGGTACGCCGAGTTGCACTCGGTGGCAGATTCTTTAC
TGACAGAGCTCTCTGAGCAAGCTGAAGACGTGTATGAGAAGACGCGCAAT
GCTGGTTCTAGCCAACGAACGAGTGCTAAACCTACGGGAAGATCGCCACG
GGGCTTATTTGGCGGCTTTCTTTTGCCGAGACGAGCTGCGACATCAGCAG
ATACGCGGAAGGTGTTTGGGGGGCGGAGCATGCCGCTGGGAAGCGGAAGA
AATGACGTTCCGCGGAAGGGCAAGCGCCTGTCAACGAGGTTCCGCTTCGG
AACTGCTCTCTCTTGA
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