Gvermi5300.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5300.t1
Unique NameGvermi5300.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length139
Homology
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BLAST of Gvermi5300.t1 vs. uniprot
Match: A0A2V3J7K8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7K8_9FLOR)

HSP 1 Score: 161 bits (407), Expect = 1.870e-48
Identity = 82/140 (58.57%), Postives = 108/140 (77.14%), Query Frame = 0 
Query:    1 MLAKFQKQESNVNQPEGESKLEKILPNELPLPTLSTLTGVNEPQSNSSSVEGNGVEN--EIDLSKISTMGVGLSQKDESTILGFLQGVVEEFKLVEWPSPSRVIRLTAVIVVTIVAAVVTLYFVDGFFYRVSHAVFEGRI 138
            M+AKFQ+Q +N  QP+GES+LE I+P ELPLPTL+TLTGV + Q+ +   E N V+   EIDLS+IS MG GLS  +E +++ FLQ   +E K +EWPS  RV+RLTA+I+VT++ AV+ LYFVDGFFYRVSH +FEG+I
Sbjct:    1 MMAKFQQQNTNTEQPDGESQLEDIVPKELPLPTLTTLTGVQQRQTKTPEDETNQVDTTEEIDLSQISAMGPGLSTAEEQSLIRFLQSAFDELKQIEWPSAGRVVRLTAIIIVTVIIAVIALYFVDGFFYRVSHILFEGKI 140
The following BLAST results are available for this feature:
BLAST of Gvermi5300.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J7K8_9FLOR1.870e-4858.57Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001901Protein translocase complex, SecE/Sec61-gamma subunitPFAMPF00584SecEcoord: 81..129
e-value: 1.5E-8
score: 34.4
IPR038379SecE superfamilyGENE3D1.20.5.1030Preprotein translocase secy subunitcoord: 77..132
e-value: 1.0E-8
score: 36.8
IPR005807SecE subunit of protein translocation complex, bacterial-likeTIGRFAMTIGR00964TIGR00964coord: 80..134
e-value: 1.2E-8
score: 32.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 101..122
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..100
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 123..138
NoneNo IPR availableTMHMMTMhelixcoord: 100..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:1136713..1137129 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5300.t1Gvermi5300.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 1136713..1137129 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5300.t1 ID=Gvermi5300.t1|Name=Gvermi5300.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=139bp
MLAKFQKQESNVNQPEGESKLEKILPNELPLPTLSTLTGVNEPQSNSSSV
EGNGVENEIDLSKISTMGVGLSQKDESTILGFLQGVVEEFKLVEWPSPSR
VIRLTAVIVVTIVAAVVTLYFVDGFFYRVSHAVFEGRI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001901Translocase_SecE/Sec61-g
IPR038379SecE_sf
IPR005807SecE_bac