Gvermi7934.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7934.t1
Unique Name	Gvermi7934.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	502

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:174757..176262 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708279.1
Preferred name	CAT1
PFAMs	Catalase,Catalase-rel
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00034,RC00767,RC02141,RC02755
KEGG ko	ko:K03781
KEGG Reaction	R00009,R00602,R02670
KEGG Pathway	ko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014
KEGG Module	M00532
GOs	GO:0000302,GO:0001101,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004096,GO:0004601,GO:0005488,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005773,GO:0005777,GO:0005829,GO:0005840,GO:0005886,GO:0005911,GO:0006950,GO:0006979,GO:0006995,GO:0007154,GO:0007275,GO:0007623,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009266,GO:0009267,GO:0009314,GO:0009409,GO:0009410,GO:0009416,GO:0009506,GO:0009507,GO:0009514,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009628,GO:0009631,GO:0009636,GO:0009648,GO:0009719,GO:0009725,GO:0009733,GO:0009737,GO:0009791,GO:0009845,GO:0009941,GO:0009970,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010319,GO:0016020,GO:0016036,GO:0016043,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019725,GO:0020037,GO:0022607,GO:0022626,GO:0030054,GO:0030312,GO:0031667,GO:0031668,GO:0031669,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0033993,GO:0042221,GO:0042493,GO:0042542,GO:0042579,GO:0042592,GO:0042594,GO:0042737,GO:0042743,GO:0042744,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043562,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045454,GO:0046677,GO:0046686,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0048046,GO:0048511,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0050897,GO:0051186,GO:0051187,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051290,GO:0051291,GO:0051716,GO:0055044,GO:0055114,GO:0065003,GO:0065007,GO:0065008,GO:0070887,GO:0071496,GO:0071840,GO:0071944,GO:0072593,GO:0090351,GO:0097159,GO:0097237,GO:0097305,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1990748,GO:1990904
Evalue	3.07e-214
EggNOG OGs	COG0753@1\|root,KOG0047@2759\|Eukaryota
EC	1.11.1.6
Description	catalase activity
COG category	P
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7934	Gvermi7934	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 174757..176262 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7934.t1.start1	Gvermi7934.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 174757..174759 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7934.t1.CDS1	Gvermi7934.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 174757..176262 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7934.t1.exon1	Gvermi7934.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 174757..176262 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7934.t1.stop1	Gvermi7934.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 176260..176262 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7934.t1	Gvermi7934.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 174757..176262 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:174757..176262+
coding sequence from alignment at ScGOVlb_24226:174757..176262+

mRNA sequence

>Gvermi7934.t1 ID=Gvermi7934.t1|Name=Gvermi7934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=502bp
LVIIVYEMNPSKTVPSDAYDSVHVTTNSGAPVDDSLNSLTVGERGPVLLS
DFHLVEKLANFDREVIPERRVHARGVAAKGVFVCTRDITKFTKADPFTHV
GKRTPVAVRFSTVVHSRGSPETLRDPRGFATKFYTSQGNWDLVGNLEPVF
FIRDAMQFPEMVHAFKPSPKTEKQEWHRMLDFLSFHPECMHMMTWLLDDV
GIPKNYTTMRGSGVHTFVFINKEGRETYVKFHWVSEQGEHNLLDDEAKQV
GGEDFSHATNHLIETIESGRFPAWQLKIQLMDPATELNHSWGDPLDPTKT
WPEKDFPMIAVGRMILNENMDNHFLESESIAFSPGNVIPGITFSQDKLLQ
GRIFSYADTQRYRLGANYLQIPINAPRCPFMNRQFDGAGATMLRKNDVNY
FPSTRSRANTVGEEQVPNVKGKLSGIPTRRSLSKQNNFGQAGERWRSFDE
ARRQRLVVRAAEALNAPKVSKKLKNIWIGYWTQCDQELGSRIGSLVKMSS
M*

spliced messenger RNA

>Gvermi7934.t1 ID=Gvermi7934.t1|Name=Gvermi7934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1506bp|location=Sequence derived from alignment at ScGOVlb_24226:174757..176262+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGTTATCATTGTTTATGAGATGAATCCAAGCAAAACAGTACCCTCTGA
TGCTTACGACTCCGTGCATGTCACAACGAACAGCGGCGCGCCAGTTGACG
ATTCTCTCAATTCGCTCACTGTGGGAGAGCGTGGGCCCGTTCTCTTGTCT
GATTTCCATCTTGTGGAGAAGCTTGCGAACTTTGATCGCGAGGTAATTCC
CGAGCGGCGCGTTCATGCCCGCGGCGTGGCTGCGAAGGGCGTGTTTGTGT
GTACGCGCGACATCACCAAATTCACAAAGGCAGATCCGTTCACTCATGTT
GGAAAGCGCACCCCTGTGGCAGTCCGTTTCTCCACGGTTGTCCATTCACG
CGGTTCACCAGAAACGCTGCGTGACCCGCGTGGATTTGCGACAAAGTTTT
ACACGAGCCAGGGAAACTGGGACCTGGTTGGTAACCTAGAAccagtgttt
ttcatccgcgatgcgatgcagtttcctgaaatggtgcatgccttcaaacc
CAGCCCGAAAACGGAGAAACAAGAATGGCACCGAATGCTTGACTTCCTTT
CTTTTCACCCAGAGTGCATGCATATGATGACATGGTTGCTGGACGATGTT
GGTATTCCCAAAAATTATACTACGATGAGAGGTTCAGGCGTTCACACGTT
TGTGTTTATCAATAAGGAGGGCCGGGAAACATACGTGAAGTTCCATTGGG
TCAGTGAGCAGGGGGAGCACAATCTGCTGGACGATGAGGCGAAACAAGTC
GGTGGCGAGGACTTCAGTCATGCTACGAACCACTTGATAGAAACTATAGA
GTCTGGGCGTTTCCCGGCTTGGCAGCTCAAGATTCAGTTGATGGATCCCG
CGACAGAATTGAATCATTCGTGGGGCGATCCCCTTGATCCAACTAAAACA
TGGCCCGAAAAAGACTTTCCCATGATTGCGGTTGGTCGTATGATTCTGAA
TGAGAACATGGACAACCATTTCCTGGAAAGCGAGAGCATTGCATTTTCCC
CAGGGAATGTCATTCCTGGGATCACATTCAGTCAGGACAAGCTGCTGCAG
GGCAGGATATTTAGCTACGCAGATACGCAGCGCTATCGACTTGGTGCCAA
CTACTTGCAGATCCCGATAAATGCACCGCGATGTCCTTTCATGAATAGGC
AGTTTGACGGTGCGGGCGCGACCATGCTCAGAAAGAATGACGTGAACTAC
TTCCCTAGCACGAGAAGCAGAGCGAATACAGTGGGAGAGGAGCAGGTTCC
TAACGTAAAAGGGAAGCTCAGTGGCATCCCAACGAGGAGATCTTTGTCTA
AGCAGAACAACTTTGGCCAGGCTGGGGAGCGCTGGCGAAGCTTCGATGAA
GCAAGGCGTCAGAGACTAGTTGTAAGGGCAGCAGAGGCTCTCAATGCCCC
GAAGGTTTCGAAGAAGTTGAAGAATATCTGGATAGGGTACTGGACGCAAT
GTGATCAGGAGCTTGGCTCTCGAATCGGCTCACTCGTGAAAATGAGCAGT
ATGTGA

protein sequence of Gvermi7934.t1

>Gvermi7934.t1 ID=Gvermi7934.t1|Name=Gvermi7934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=502bp
LVIIVYEMNPSKTVPSDAYDSVHVTTNSGAPVDDSLNSLTVGERGPVLLS
DFHLVEKLANFDREVIPERRVHARGVAAKGVFVCTRDITKFTKADPFTHV
GKRTPVAVRFSTVVHSRGSPETLRDPRGFATKFYTSQGNWDLVGNLEPVF
FIRDAMQFPEMVHAFKPSPKTEKQEWHRMLDFLSFHPECMHMMTWLLDDV
GIPKNYTTMRGSGVHTFVFINKEGRETYVKFHWVSEQGEHNLLDDEAKQV
GGEDFSHATNHLIETIESGRFPAWQLKIQLMDPATELNHSWGDPLDPTKT
WPEKDFPMIAVGRMILNENMDNHFLESESIAFSPGNVIPGITFSQDKLLQ
GRIFSYADTQRYRLGANYLQIPINAPRCPFMNRQFDGAGATMLRKNDVNY
FPSTRSRANTVGEEQVPNVKGKLSGIPTRRSLSKQNNFGQAGERWRSFDE
ARRQRLVVRAAEALNAPKVSKKLKNIWIGYWTQCDQELGSRIGSLVKMSS
M*

mRNA from alignment at ScGOVlb_24226:174757..176262+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7934.t1 ID=Gvermi7934.t1|Name=Gvermi7934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1506bp|location=Sequence derived from alignment at ScGOVlb_24226:174757..176262+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGTTATCATTGTTTATGAGATGAATCCAAGCAAAACAGTACCCTCTGA
TGCTTACGACTCCGTGCATGTCACAACGAACAGCGGCGCGCCAGTTGACG
ATTCTCTCAATTCGCTCACTGTGGGAGAGCGTGGGCCCGTTCTCTTGTCT
GATTTCCATCTTGTGGAGAAGCTTGCGAACTTTGATCGCGAGGTAATTCC
CGAGCGGCGCGTTCATGCCCGCGGCGTGGCTGCGAAGGGCGTGTTTGTGT
GTACGCGCGACATCACCAAATTCACAAAGGCAGATCCGTTCACTCATGTT
GGAAAGCGCACCCCTGTGGCAGTCCGTTTCTCCACGGTTGTCCATTCACG
CGGTTCACCAGAAACGCTGCGTGACCCGCGTGGATTTGCGACAAAGTTTT
ACACGAGCCAGGGAAACTGGGACCTGGTTGGTAACCTAGAAccagtgttt
ttcatccgcgatgcgatgcagtttcctgaaatggtgcatgccttcaaacc
CAGCCCGAAAACGGAGAAACAAGAATGGCACCGAATGCTTGACTTCCTTT
CTTTTCACCCAGAGTGCATGCATATGATGACATGGTTGCTGGACGATGTT
GGTATTCCCAAAAATTATACTACGATGAGAGGTTCAGGCGTTCACACGTT
TGTGTTTATCAATAAGGAGGGCCGGGAAACATACGTGAAGTTCCATTGGG
TCAGTGAGCAGGGGGAGCACAATCTGCTGGACGATGAGGCGAAACAAGTC
GGTGGCGAGGACTTCAGTCATGCTACGAACCACTTGATAGAAACTATAGA
GTCTGGGCGTTTCCCGGCTTGGCAGCTCAAGATTCAGTTGATGGATCCCG
CGACAGAATTGAATCATTCGTGGGGCGATCCCCTTGATCCAACTAAAACA
TGGCCCGAAAAAGACTTTCCCATGATTGCGGTTGGTCGTATGATTCTGAA
TGAGAACATGGACAACCATTTCCTGGAAAGCGAGAGCATTGCATTTTCCC
CAGGGAATGTCATTCCTGGGATCACATTCAGTCAGGACAAGCTGCTGCAG
GGCAGGATATTTAGCTACGCAGATACGCAGCGCTATCGACTTGGTGCCAA
CTACTTGCAGATCCCGATAAATGCACCGCGATGTCCTTTCATGAATAGGC
AGTTTGACGGTGCGGGCGCGACCATGCTCAGAAAGAATGACGTGAACTAC
TTCCCTAGCACGAGAAGCAGAGCGAATACAGTGGGAGAGGAGCAGGTTCC
TAACGTAAAAGGGAAGCTCAGTGGCATCCCAACGAGGAGATCTTTGTCTA
AGCAGAACAACTTTGGCCAGGCTGGGGAGCGCTGGCGAAGCTTCGATGAA
GCAAGGCGTCAGAGACTAGTTGTAAGGGCAGCAGAGGCTCTCAATGCCCC
GAAGGTTTCGAAGAAGTTGAAGAATATCTGGATAGGGTACTGGACGCAAT
GTGATCAGGAGCTTGGCTCTCGAATCGGCTCACTCGTGAAAATGAGCAGT
ATGTGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:174757..176262+

>Gvermi7934.t1 ID=Gvermi7934.t1|Name=Gvermi7934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1506bp|location=Sequence derived from alignment at ScGOVlb_24226:174757..176262+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGTTATCATTGTTTATGAGATGAATCCAAGCAAAACAGTACCCTCTGA
TGCTTACGACTCCGTGCATGTCACAACGAACAGCGGCGCGCCAGTTGACG
ATTCTCTCAATTCGCTCACTGTGGGAGAGCGTGGGCCCGTTCTCTTGTCT
GATTTCCATCTTGTGGAGAAGCTTGCGAACTTTGATCGCGAGGTAATTCC
CGAGCGGCGCGTTCATGCCCGCGGCGTGGCTGCGAAGGGCGTGTTTGTGT
GTACGCGCGACATCACCAAATTCACAAAGGCAGATCCGTTCACTCATGTT
GGAAAGCGCACCCCTGTGGCAGTCCGTTTCTCCACGGTTGTCCATTCACG
CGGTTCACCAGAAACGCTGCGTGACCCGCGTGGATTTGCGACAAAGTTTT
ACACGAGCCAGGGAAACTGGGACCTGGTTGGTAACCTAGAAccagtgttt
ttcatccgcgatgcgatgcagtttcctgaaatggtgcatgccttcaaacc
CAGCCCGAAAACGGAGAAACAAGAATGGCACCGAATGCTTGACTTCCTTT
CTTTTCACCCAGAGTGCATGCATATGATGACATGGTTGCTGGACGATGTT
GGTATTCCCAAAAATTATACTACGATGAGAGGTTCAGGCGTTCACACGTT
TGTGTTTATCAATAAGGAGGGCCGGGAAACATACGTGAAGTTCCATTGGG
TCAGTGAGCAGGGGGAGCACAATCTGCTGGACGATGAGGCGAAACAAGTC
GGTGGCGAGGACTTCAGTCATGCTACGAACCACTTGATAGAAACTATAGA
GTCTGGGCGTTTCCCGGCTTGGCAGCTCAAGATTCAGTTGATGGATCCCG
CGACAGAATTGAATCATTCGTGGGGCGATCCCCTTGATCCAACTAAAACA
TGGCCCGAAAAAGACTTTCCCATGATTGCGGTTGGTCGTATGATTCTGAA
TGAGAACATGGACAACCATTTCCTGGAAAGCGAGAGCATTGCATTTTCCC
CAGGGAATGTCATTCCTGGGATCACATTCAGTCAGGACAAGCTGCTGCAG
GGCAGGATATTTAGCTACGCAGATACGCAGCGCTATCGACTTGGTGCCAA
CTACTTGCAGATCCCGATAAATGCACCGCGATGTCCTTTCATGAATAGGC
AGTTTGACGGTGCGGGCGCGACCATGCTCAGAAAGAATGACGTGAACTAC
TTCCCTAGCACGAGAAGCAGAGCGAATACAGTGGGAGAGGAGCAGGTTCC
TAACGTAAAAGGGAAGCTCAGTGGCATCCCAACGAGGAGATCTTTGTCTA
AGCAGAACAACTTTGGCCAGGCTGGGGAGCGCTGGCGAAGCTTCGATGAA
GCAAGGCGTCAGAGACTAGTTGTAAGGGCAGCAGAGGCTCTCAATGCCCC
GAAGGTTTCGAAGAAGTTGAAGAATATCTGGATAGGGTACTGGACGCAAT
GTGATCAGGAGCTTGGCTCTCGAATCGGCTCACTCGTGAAAATGAGCAGT
ATGTGA